Gene

KWMTBOMO07495

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr12(+):14588239-14590263      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.358

CDS

ATGCTTTTACCGTTTAATCTGGTTCATCTCTGCACCCCCTTCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCAGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MLLPFNLVHLCTPFEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGQALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   J9LF86   X1XFE3   J9LFC9   X1X928   + More
J9L876   J9KPF1   A0A2S2RAN7   J9KCZ4   X1WNI2   X1WSV5   A0A087T1W0   J9KLQ2   A0A2S2Q823   X1XGU0   X1WZH0   A0A087U2S8   X1WN18   A0A2S2NJB5   U4UTK6   V5GNF3   J9LR29   J9KVX5   A0A1Y1KUU7   J9LC21   X1WWQ0   A0A2J7QEZ4   A0A194Q1H8   A0A2J7Q5G9   A0A0N0PA09   X1WQK3   X1WLB2   A0A0A9Z4E6   A0A0N1PFV1   A0A0A9YN51   J9KKL3   X1WMU5   V5I850   A0A2J7PMP9   A0A087TV70   J9JS95   A0A2S2PR14   A0A2J7RS77   A0A2J7RIW7   A0A2J7RB54   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A2L2YNL2   X1WVA7   A0A2J7Q059   A0A2J7PMP6   A0A1Y1NA23   A0A0A9YJ00   A0A2J7QUJ9   A0A2J7QFL0   X1WWC4   A0A2J7Q0Q6   A0A2J7RPU2   Q9XXW0   A0A0A9YU04   A0A2J7RRU8   A0A224XF24   A0A2J7Q1Y9   A0A2J7Q6J2   A0A2J7R2E1   A0A2J7R6U1   X1WXU3   X1X0N4   A0A2J7RKP3   V5GNJ2   Q9BPQ0   A0A087TRT5   A0A2J7PU96   A0A2J7QY69   A0A2J7PBY3   Q8T456   A0A2J7QR37   A0A2J7PDS9   A0A139WA11   P21328   A0A2P8Y5U7   J9KPF0   A0A2J7QQP1   A0A2J7PF43   O96544   X1X5E5   A0A2S2PX53   A0A2S2QTZ8   A0A2H8TV33   A0A2A4K8E7   J9JKP0   X1X2B8  

EC Number

2.7.7.49

Pubmed

23537049    28004739    26354079    25401762    26561354    10333566    + More
18362917    19820115    2463954    3040362    1714378    29403074    10380107   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02017815    ABLF02029291    + More
ABLF02023911    ABLF02066620    ABLF02033522    ABLF02041767    GGMS01017914    MBY87117.1    ABLF02008463    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02016494    ABLF02066976    KK113014    KFM59099.1    ABLF02030319    ABLF02030320    GGMS01004685    MBY73888.1    ABLF02055645    ABLF02034467    KK117880    KFM71667.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01004661    MBY17280.1    KB632361    ERL93526.1    GALX01005359    JAB63107.1    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02010251    ABLF02035981    GEZM01074951    JAV64378.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02021994    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    KQ459580    KPI99178.1    NEVH01017559    PNF23833.1    KQ459259    KPJ02068.1    ABLF02041766    ABLF02042518    ABLF02057746    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    KQ459265    KPJ02064.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02014862    ABLF02014866    ABLF02061908    GALX01005300    JAB63166.1    NEVH01023961    PNF17613.1    KK116883    KFM69009.1    ABLF02028535    ABLF02028545    GGMR01019198    MBY31817.1    NEVH01000280    PNF43672.1    NEVH01003017    PNF40781.1    NEVH01005938    PNF38077.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    IAAA01035747    LAA09607.1    ABLF02034494    NEVH01020071    PNF21969.1    NEVH01023962    PNF17612.1    GEZM01008457    JAV94772.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01010546    PNF32261.1    NEVH01014858    PNF27387.1    ABLF02003961    ABLF02059872    NEVH01019964    PNF22161.1    NEVH01001355    PNF42855.1    AB018558    BAA76304.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01000598    PNF43535.1    GFTR01008038    JAW08388.1    NEVH01019376    PNF22596.1    NEVH01017470    PNF24199.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    ABLF02008933    ABLF02060395    NEVH01002716    PNF41415.1    GALX01005299    JAB63167.1    AB055391    BAB21761.1    KK116445    KFM67824.1    NEVH01021205    PNF19912.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    AY089343    AAL90081.2    NEVH01011985    PNF31054.1    NEVH01026154    PNF14491.1    KQ971729    KYB24751.1    M22874    M38643    PYGN01000895    PSN39611.1    ABLF02038199    ABLF02038200    ABLF02038201    ABLF02038202    ABLF02038205    NEVH01012084    PNF30905.1    NEVH01026085    PNF14941.1    AF081101    AAC72919.1    ABLF02037507    ABLF02041173    ABLF02054117    GGMS01000737    MBY69940.1    GGMS01012005    MBY81208.1    GFXV01005866    MBW17671.1    NWSH01000032    PCG80497.1    ABLF02027009    ABLF02027012    ABLF02041765   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000030742    UP000235965    + More
UP000053268    UP000007266    UP000245037   

PRIDE

Q9XXW0    Q9BPQ0    Q8T456    P21328   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF13843   DDE_Tnp_1_7
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
IPR029526   PGBD       
IPR041373   RT_RNaseH       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   J9LF86   X1XFE3   J9LFC9   X1X928   + More
J9L876   J9KPF1   A0A2S2RAN7   J9KCZ4   X1WNI2   X1WSV5   A0A087T1W0   J9KLQ2   A0A2S2Q823   X1XGU0   X1WZH0   A0A087U2S8   X1WN18   A0A2S2NJB5   U4UTK6   V5GNF3   J9LR29   J9KVX5   A0A1Y1KUU7   J9LC21   X1WWQ0   A0A2J7QEZ4   A0A194Q1H8   A0A2J7Q5G9   A0A0N0PA09   X1WQK3   X1WLB2   A0A0A9Z4E6   A0A0N1PFV1   A0A0A9YN51   J9KKL3   X1WMU5   V5I850   A0A2J7PMP9   A0A087TV70   J9JS95   A0A2S2PR14   A0A2J7RS77   A0A2J7RIW7   A0A2J7RB54   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A2L2YNL2   X1WVA7   A0A2J7Q059   A0A2J7PMP6   A0A1Y1NA23   A0A0A9YJ00   A0A2J7QUJ9   A0A2J7QFL0   X1WWC4   A0A2J7Q0Q6   A0A2J7RPU2   Q9XXW0   A0A0A9YU04   A0A2J7RRU8   A0A224XF24   A0A2J7Q1Y9   A0A2J7Q6J2   A0A2J7R2E1   A0A2J7R6U1   X1WXU3   X1X0N4   A0A2J7RKP3   V5GNJ2   Q9BPQ0   A0A087TRT5   A0A2J7PU96   A0A2J7QY69   A0A2J7PBY3   Q8T456   A0A2J7QR37   A0A2J7PDS9   A0A139WA11   P21328   A0A2P8Y5U7   J9KPF0   A0A2J7QQP1   A0A2J7PF43   O96544   X1X5E5   A0A2S2PX53   A0A2S2QTZ8   A0A2H8TV33   A0A2A4K8E7   J9JKP0   X1X2B8  

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

339

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03761

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.00135

outside

1  -  339

 

 

Pi

24.485976

Theta

30.064287

Tajima's D

-0.534516

CLR

1.387097

CSRT

0.23698815059247

Interpretation

Uncertain