Gene

KWMTBOMO07492

Annotation

ionotropic_receptor_60a1b_[Heliconius_melpomene_rosina]

Location

Bomo_Chr12(-):14332865-14334722      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.014

CDS

ATGCTTAATGACGTATTGACCGACGCTAATAAGGACAACGATGTTGTGAATTGCACTGGATTTATTTTAAACAATTATTTCAGTGATAAAAAGACTATTACATTGATATCAATGGATTTTGACGGGGGAATACCGAAATTGATCAATTCGTTTGGTAAATTCAATGTTATTAATAGAAACGTAACCAAAAAGACAATGTTGCTAAACGATATGTATCTGATAACAGTCAGAACCGAAAAGGTATTCGTTGAACAATTCGAAAACCTAACTAAAGACGCAACGTGGAATCCAAAATTAAAATTTTTAATTGTATTCAAAGAATTAAAACAAGAAAACGTTAAAGATGTTTTCGATATCCTACTAAAACATCACGTTTTGAATGTAGTAATCGCGAACGGAACTAACGACCCAAATATTTTGTCGTACAATCCTTACGAAAATTACGCTTGCGGGAAGTACTATACCGGTATCATTAATTACGGAAAATGTATAAACACATCCACTGAACTGTATCCGAATAAACTGGTCACAGGTTTGAGAGGTTGCGTATTCAATGTATCTGTACCTCACTGGCCTCCTTATACTGTGGATCCGGGGAAGATATCAAAACCATCAATACCAATTGGAATCGAACAATACACTATTAATGTGTTAGCAGAAATCGAGAAGTTCAAAGTTAATTACCAGTATAACTATGATGCGGATGTATTTTCAACTGTTGACGAGGACATGAAAGCCACAGGCCCTATGGATATGCTGCAGAGAAACTTAACGGATTTGATGATAGGCGGTATGCTTCTCGTTCCGCTCCGAGCCGCTGCGTTCTCTTACATCTACACACATGTAGATTATATAGACGAGATCAGTGTCGTCATCCAAAAAGCGTCATTGAAGCCCGTTTGGTCTTTCTACTACCGCGAATTCGACTTCAGGGTCTGGGCATTATTGATCGTAGTCTTCATACTGTTCACTGTGATTGTAGCATATTTACTGCGGGAGCAAGACAAAACGTACATTCTGTTGAAGTTGTTGGATTACTTCTTCCTCCACGGCTACAAGCTACGTTTCAGATTGAGTGTTAGATGCATCTTCATATTCTGGATATGGTTCACGTATTTGGTGAATAGTTTTTATCAAACGAGCATGATGAGTTTCACGACGAAACCTAGTCTGGAAACGCAGATCGCCGACATGGAGACGCTGGTGGAGCGAGGAATCGAGCCGTGCATAAGCCGTGCCATCATCAACTTTTTACCAGAAAACGAAATTAAATACAATGAGAAAATACAAAGCTGCAAAACTATTTTGGGAAGCATAATGACAGTAAGCAAATCCAAATATCTATACACTATCGTCATGAATACAATTTATATGTATAATAAAAATAAATTCGTTGATGAATTCGGCGATCCTAACGTTTATAGCTTCAGCAAGCCAGTAGCGAAGGTTATCTACGGTATATTTACGTACAAAGGATTTCCCTTGCACTATAGATTCCATCGGCTAGCTCTCCGCATCAGGGAAGCGGGACTGATCTGGTATCACCGAGACTATCAGAACTACATCAACGGCCTGGTACATCGCCACCGTCAAAAGTATTTCGTTTCGCGTTTTGCGATTCCGTGGTATGTCTTTACAATTGGAACTTTCCTAGCTTTGGTCGCTTTTGTGTTTGAACTTAATGAAAAGAGTAGAGAAATAAATTGA

Protein

MLNDVLTDANKDNDVVNCTGFILNNYFSDKKTITLISMDFDGGIPKLINSFGKFNVINRNVTKKTMLLNDMYLITVRTEKVFVEQFENLTKDATWNPKLKFLIVFKELKQENVKDVFDILLKHHVLNVVIANGTNDPNILSYNPYENYACGKYYTGIINYGKCINTSTELYPNKLVTGLRGCVFNVSVPHWPPYTVDPGKISKPSIPIGIEQYTINVLAEIEKFKVNYQYNYDADVFSTVDEDMKATGPMDMLQRNLTDLMIGGMLLVPLRAAAFSYIYTHVDYIDEISVVIQKASLKPVWSFYYREFDFRVWALLIVVFILFTVIVAYLLREQDKTYILLKLLDYFFLHGYKLRFRLSVRCIFIFWIWFTYLVNSFYQTSMMSFTTKPSLETQIADMETLVERGIEPCISRAIINFLPENEIKYNEKIQSCKTILGSIMTVSKSKYLYTIVMNTIYMYNKNKFVDEFGDPNVYSFSKPVAKVIYGIFTYKGFPLHYRFHRLALRIREAGLIWYHRDYQNYINGLVHRHRQKYFVSRFAIPWYVFTIGTFLALVAFVFELNEKSREIN

Uniprot

A0A2H1VMG9   A0A2H1VMI1   A0A141W3N3   A0A2H1VMJ6   A0A141W3L5   A0A141W3N6   + More
A0A141W3M1   A0A140G9F9   A0A141W3M6   A0A2H1VMJ2   A0A141W3L3   A0A141W3L0   A0A2H1VMH4   A0A141W3N0   A0A2A4JWI1   A0A141W3M8   A0A141W3K8   A0A141W3L7   A0A2H1VNK3   A0A2H1VMK5   A0A141W3M5   A0A141W3M3   A0A141W3N4   A0A140G9F8   A0A141W3L4   A0A141W3M0   A0A141W3L1   A0A0N1IE11   A0A141W3N1   A0A2A4IW05   A0A212FKD7   A0A2A4IVU0   A0A194PTV1   A0A0N1I968   A0A194Q099   A0A0L7LIL9   A0A141W3Q4   A0A0N1IEJ6   A0A141W3R2   A0A141W3Q6   A0A141W3Q5   A0A141W3R0   A0A194QRC0   A0A141W3N7   A0A141W3Q1   A0A140G9G1   A0A141W3R4   A0A141W3P8   A0A141W3R3   A0A141W3P5   A0A140G9G0   A0A141W3Q7   A0A141W3Q2   A0A140G9G4   A0A141W3P3   A0A141W3N9   A0A141W3N8   A0A141W3P6   A0A141W3Q0   A0A141W3P7   A0A141W3R1   A0A140G9G3   A0A141W3P9   A0A141W3P1   A0A141W3Q8   A0A141W3P4   A0A2H1WDJ2   A0A141W3Q3   A0A140G9G2   A0A141W3P2   A0A141W3P0   A0A141W3Q9   A0A1Y1K0Z3   D7EIG1   A0A2J7PQN8   A0A2J7Q1E9   A0A139W8Y9   A0A2P8Y3B4   A0A2J7PYQ4   A0A2P8XUX9   A0A182MRQ9   A0A2J7QIM5   A0A067RRD1   A0A067QYK3   A0A1J1HH52   A0A2P8XE02   A0A345BF31   A0A139WCW6   A0A2P8XW60   A0A1V1WCA0   A0A2P8ZGR2   A0A2P8ZGR1   A0A223HD95   A0A223HCY7   A0A139WDK7  

Pubmed

27004525    26354079    22118469    26227816    28004739    18362917    + More
19820115    29403074    24845553    29727827    28150741   

EMBL

ODYU01003362    SOQ42029.1    SOQ42031.1    KU757007    AMM70740.1    SOQ42027.1    + More
KU756989    AMM70722.1    KU757010    AMM70743.1    KU756995    AMM70728.1    KU702611    AMM70638.1    KU757000    AMM70733.1    SOQ42028.1    KU756987    AMM70720.1    KU756984    AMM70717.1    SOQ42030.1    KU757004    AMM70737.1    NWSH01000544    PCG75752.1    KU757002    AMM70735.1    KU756982    AMM70715.1    KU756991    AMM70724.1    SOQ42032.1    SOQ42026.1    KU756999    AMM70732.1    KU756997    AMM70730.1    KU757008    AMM70741.1    KU702610    AMM70637.1    KU756988    AMM70721.1    KU756994    AMM70727.1    KU756985    AMM70718.1    KQ460636    KPJ13368.1    KU757005    AMM70738.1    NWSH01006695    PCG63303.1    AGBW02008066    OWR54201.1    PCG63302.1    KQ459592    KPI96841.1    KPJ13366.1    KPI96840.1    JTDY01000968    KOB75250.1    KU757028    AMM70761.1    KQ458479    KPJ05884.1    KU757036    AMM70769.1    KU757030    AMM70763.1    KU757029    AMM70762.1    KU757034    AMM70767.1    KQ461175    KPJ07889.1    KU757011    AMM70744.1    KU757025    AMM70758.1    KU702613    AMM70640.1    KU757038    AMM70771.1    KU757022    AMM70755.1    KU757037    AMM70770.1    KU757019    AMM70752.1    KU702612    AMM70639.1    KU757031    AMM70764.1    KU757026    AMM70759.1    KU702616    AMM70643.1    KU757017    AMM70750.1    KU757013    AMM70746.1    KU757012    AMM70745.1    KU757020    AMM70753.1    KU757024    AMM70757.1    KU757021    AMM70754.1    KU757035    AMM70768.1    KU702615    AMM70642.1    KU757023    AMM70756.1    KU757015    AMM70748.1    KU757032    AMM70765.1    KU757018    AMM70751.1    ODYU01007906    SOQ51097.1    KU757027    AMM70760.1    KU702614    AMM70641.1    KU757016    AMM70749.1    KU757014    AMM70747.1    KU757033    AMM70766.1    GEZM01097657    JAV54161.1    DS497678    EFA11918.1    NEVH01022635    PNF18650.1    NEVH01019415    PNF22398.1    KQ972879    KXZ75746.1    PYGN01000978    PSN38746.1    PSN38753.1    NEVH01020342    PNF21456.1    PYGN01001306    PSN35821.1    AXCM01002874    NEVH01013586    PNF28426.1    KK852511    KDR22314.1    KK852871    KDR14577.1    CVRI01000004    CRK87351.1    PYGN01002584    PSN30225.1    MG820684    AXF48855.1    KQ971363    KYB25671.1    PYGN01001256    PSN36245.1    GENK01000122    JAV45791.1    PYGN01000062    PSN55694.1    PSN55692.1    KY283701    AST36360.1    KY283571    AST36231.1    KQ971357    KYB26016.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000053268    UP000037510    UP000007266    + More
UP000235965    UP000245037    UP000075883    UP000027135    UP000183832   

Pfam

PF00060   Lig_chan        + More
PF10613   Lig_chan-Glu_bd

Interpro

IPR001320   Iontro_rcpt        + More
IPR019594   Glu/Gly-bd       

ProteinModelPortal

A0A2H1VMG9   A0A2H1VMI1   A0A141W3N3   A0A2H1VMJ6   A0A141W3L5   A0A141W3N6   + More
A0A141W3M1   A0A140G9F9   A0A141W3M6   A0A2H1VMJ2   A0A141W3L3   A0A141W3L0   A0A2H1VMH4   A0A141W3N0   A0A2A4JWI1   A0A141W3M8   A0A141W3K8   A0A141W3L7   A0A2H1VNK3   A0A2H1VMK5   A0A141W3M5   A0A141W3M3   A0A141W3N4   A0A140G9F8   A0A141W3L4   A0A141W3M0   A0A141W3L1   A0A0N1IE11   A0A141W3N1   A0A2A4IW05   A0A212FKD7   A0A2A4IVU0   A0A194PTV1   A0A0N1I968   A0A194Q099   A0A0L7LIL9   A0A141W3Q4   A0A0N1IEJ6   A0A141W3R2   A0A141W3Q6   A0A141W3Q5   A0A141W3R0   A0A194QRC0   A0A141W3N7   A0A141W3Q1   A0A140G9G1   A0A141W3R4   A0A141W3P8   A0A141W3R3   A0A141W3P5   A0A140G9G0   A0A141W3Q7   A0A141W3Q2   A0A140G9G4   A0A141W3P3   A0A141W3N9   A0A141W3N8   A0A141W3P6   A0A141W3Q0   A0A141W3P7   A0A141W3R1   A0A140G9G3   A0A141W3P9   A0A141W3P1   A0A141W3Q8   A0A141W3P4   A0A2H1WDJ2   A0A141W3Q3   A0A140G9G2   A0A141W3P2   A0A141W3P0   A0A141W3Q9   A0A1Y1K0Z3   D7EIG1   A0A2J7PQN8   A0A2J7Q1E9   A0A139W8Y9   A0A2P8Y3B4   A0A2J7PYQ4   A0A2P8XUX9   A0A182MRQ9   A0A2J7QIM5   A0A067RRD1   A0A067QYK3   A0A1J1HH52   A0A2P8XE02   A0A345BF31   A0A139WCW6   A0A2P8XW60   A0A1V1WCA0   A0A2P8ZGR2   A0A2P8ZGR1   A0A223HD95   A0A223HCY7   A0A139WDK7  

KEGG

NA   

GO

GO:0016021   GO:0004970   GO:0050804   GO:0035249   GO:0005886   GO:0045211   GO:1904315   GO:0008066  

Length:

568

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

92.8062000000001

Exp number, first 60 AAs:

0.27152

Total prob of N-in:

0.44792

outside

1  -  256

TMhelix

257  -  279

inside

280  -  311

TMhelix

312  -  331

outside

332  -  355

TMhelix

356  -  378

inside

379  -  537

TMhelix

538  -  560

outside

561  -  568

 

 

Pi

20.97788

Theta

15.078513

Tajima's D

1.169647

CLR

0.552666

CSRT

0.72026398680066

Interpretation

Uncertain