SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07490
Pre Gene Modal
BGIBMGA003203
Annotation
blastopia_polyprotein_[Lasius_niger]
Location in the cell
Nuclear   Reliability : 3.486
 

Sequence

CDS
ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGAAGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGTATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGAAGAAAGAACCTATTTACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGCCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGGCTACGGCTAGCAGCGCGAGAACGGAGCAGCAACCGAAACACACGTATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTGACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATGAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTAATATCAAGTGAACAATTTAAAACAAACATTGAAATCGACGGCTACACGTATCGTGATATAATATTTTATGTGATTCCTAGAGACAGTATACCTATTAAAGTGATATTGGGACATGAATTTTTAAGAAATGTTATTACAGTTATGAAAGATGGTTTGGTATGGATGAAACCAAATGATTGGTTGTTTAAGGTAAATTGTTTTCCATGTTCTATTGACATTGTAGGTCATGTTATGAATGAAAATGTGAGGAATGAAGTGACTAGGTTAGTAGATGAATATCGGCCATGTCAAACTAAAGAGGCTCCCATTGAGTTGAAAATCACACTTAAAGACGACATCCCAGTGGCTCAACGACCACGACGCATCTCACCAAAAGAACAGGATGAGGTAGATAAACAGGTTAAGGAGTGGCTGGAACAAGGAGTTATTCGGGTAAGCTTTTCTGAATATACTAGCCCAATTGTTCTTGTCAGAAAGAAAAACGGAAACATAAGAATATGTGTTGATTATAGATTAATTAATAGGAAAATGCTCAAGGATGAATACCCGCTACCCATTATCGATGAACTTATTGACAGACTGGCACCTGCGAGAATATTTAGTGCACTTGATCTTAAAAATGGATTTTTTCATTTAAGGGTCAGCAAGGATTCTATTAAGTATACATCTTTTGTAACAATGAACGGCCAATATGAATTTTTAAAGGCACCCTTTGGTTTATCAATTTGTCCCAAAGTTTTTACAAGATTTATTTCAATAATATTTAGAGACTTGATAACGAGGGGTATTGTCATAGTATTTATCGATGATTTGTTGATACCGGCTATAAATGAAGCTCAAGCTGTTGCACGATTGCGAGAAGTATTACAATTGGCTATGGAGTACGGATTACAAATAAACTGGAAGAAATCTCAATTATTAGTAAGAAAAGTGGAATATTTAGGACATGTTATTGAAGGTGGAACAGTTATGCCATCATCGGGAAAGACAGATGCTGTCATTAAATTTCCTGAGCCGAGAAATGAGAAGCAACTACAAAGTTTCTTAGGACTTTGTTCCTATTTTAGAAAATACATACAAAATTATGCAGTGATAGCACGACCTCTTACTGATATGTTAAGAAAGGATAAGAAGTTTGAATTTAACAATGAACATAGATTAGTTTTCAATATGCTTAAGGAAAAGTTGACCAGTAAACCTGTATTGAAAATTTATGAACCAAAAGCAGAAACAGAACTTCATACAGATGCCTCAAGTATAGCATATGCGGCTATATTATTACAGAAAGATGACAACAGTGAACTACATCCAGTACATTATATGAGCAAGCGAACAACTGACGATGAGAGTAAATATACAAGTTATGAGCTAGAAGCTTTGGCTATAATAGAAGGTATAAAGAAGTTTAGACATTATTTATACGGAAAGCATTTTAAGATAGTTACAGACTGCAAAGCTTTTCAAATGACACTGAATAAAAAAGATCTAGCAATGAGTACAAGAGTGGCACGATGGATATTGTTCTTACAAGATTATGATTTCACTATTGAACATCGTGAAGGTTCGAAGATGAAACACACAGATGCTCTAAGCCGAAACCCATATGTAGCTCTTATATTTTCAGACCTACATAGTGATTTAAGACGTGCGCAAGAGAGTGACAACGGATTAAATGCAATTATGAATATTCTGAGAGATGGTAAACTATATAATGACTTTTATTTGCAAGGAGGATTACTCTGCAAGGGACCACAACATTGTTTGGTTGTACCACAGAAGATGGAAATTGAAATTATTAAGAGGGCGCATGATAATGGTCATTTTTCAAAGAAGAAAACAATGGAATTGATTAATAAGGATTATTACATACCAAAATTAGAGAAAAAGATTGAGGATTATATTGCTACATGCATACCTTGTCTGTTAGCATCCCGTAAAGAAGGTAAACGAGAAGGATTTTTGAATCCCATAGAAAAGGGTGACACACCATTACATACACTTCACCTGGACCACATTGGACCACTTACGGAGACACGTAAGCAATATAATTACATATTGACTATTGTTGACGCATTCACCAAGTTTGTATGGTTGTTCCCTACAAAGAGTACATCTACCCAAGAAGTGTTAAATAAGCTGGAAATACATCAACAAGTATTTGGTAATCCTATAAGAATTATTTCAGATAGAGGGACTGCATTTACGAGTAACGATTTTGCACAGTACTGTAAAGAGGAAGAAATAGAGCATGTAAAAATAACAACAGGGGTTCCCAGAGGAAACGGTCAGGTTGAAAGGGTTCATAGAACAATAATTTCAGTACTGACAAAACTTTCAGTTGAGAAACCTACATTGTGGTATAAGTTGGTAAGCCGAGTTCAAAGAGCACTCAACAGTACTTACCACAGGAGTATAAATAGTACCCCATTTCAATTACTCTTTGGAATAAAAATGAAGAGGAAAGAAGATATTCAATTACTGGACCTTTTGATGGAAGAAGAAAGACACAATTTCATTGACAGTAGAGAAGAACTTAGGAAGGAAGCGAAGAAACAAATATTTAAAGTACAAGAAGAAAATAGAAGAAATTACAACAAGAAAATGAAAGAATGTACTATATACAAGGAAGGCGACTTAGTAGCTGTGAAAAGGACTCAGTTTGGTACAGGAATGAAACTGAAACCAAAGTTTTTGGGACCATATCGAATAGTAAAGGTCAAAAGAAAGAATAGATACAATGTTGAGAAGGCTGACGCACAAGTTGAAGGCCCTAACAAGACTACTACATCTGCTGATTTTATGAAAAAGTGGCCTGATTACTTAAGTGACTGA
Protein
MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRKFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMKKEPIYGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSATASSARTEQQPKHTYIATTQEGANTIFENQSDEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYEQIGSPTCFKNVNTVLTGLGSSKVISSEQFKTNIEIDGYTYRDIIFYVIPRDSIPIKVILGHEFLRNVITVMKDGLVWMKPNDWLFKVNCFPCSIDIVGHVMNENVRNEVTRLVDEYRPCQTKEAPIELKITLKDDIPVAQRPRRISPKEQDEVDKQVKEWLEQGVIRVSFSEYTSPIVLVRKKNGNIRICVDYRLINRKMLKDEYPLPIIDELIDRLAPARIFSALDLKNGFFHLRVSKDSIKYTSFVTMNGQYEFLKAPFGLSICPKVFTRFISIIFRDLITRGIVIVFIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTVMPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDDESKYTSYELEALAIIEGIKKFRHYLYGKHFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRDGKLYNDFYLQGGLLCKGPQHCLVVPQKMEIEIIKRAHDNGHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLASRKEGKREGFLNPIEKGDTPLHTLHLDHIGPLTETRKQYNYILTIVDAFTKFVWLFPTKSTSTQEVLNKLEIHQQVFGNPIRIISDRGTAFTSNDFAQYCKEEEIEHVKITTGVPRGNGQVERVHRTIISVLTKLSVEKPTLWYKLVSRVQRALNSTYHRSINSTPFQLLFGIKMKRKEDIQLLDLLMEEERHNFIDSREELRKEAKKQIFKVQEENRRNYNKKMKECTIYKEGDLVAVKRTQFGTGMKLKPKFLGPYRIVKVKRKNRYNVEKADAQVEGPNKTTTSADFMKKWPDYLSD

Summary

EMBL
GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    LBMM01010976    KMQ87102.1    + More
GBBI01004477    JAC14235.1    GBBI01004549    JAC14163.1    GBBI01004613    JAC14099.1    ABLF02005846    LBMM01005919    KMQ91096.1    KMQ91095.1    GAMC01015907    JAB90648.1    GBXI01005773    JAD08519.1    GBXI01004632    JAD09660.1    LBMM01011782    KMQ86633.1    GEHC01000930    JAV46715.1    GGFK01005990    MBW39311.1    GAMC01020207    JAB86348.1    ABLF02014660    ABLF02042774    GAKP01016235    JAC42717.1    GAKP01016237    JAC42715.1    GAMC01007326    JAB99229.1    ABLF02005127    ABLF02005129    ABLF02007401    GGFL01001689    MBW65867.1    GAKP01019383    JAC39569.1    AY050234    AAK84933.1    Z27119    CAA81643.1    GFTR01008753    JAW07673.1    ABLF02033943    ABLF02042737    ABLF02004401    ABLF02013544    ABLF02013550    GGMR01009949    MBY22568.1    GGMR01005091    MBY17710.1    GGMR01003388    MBY16007.1    GFXV01005120    MBW16925.1    ABLF02008401    ABLF02008404    ABLF02041876    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GEHC01000876    JAV46769.1    GGMR01015682    MBY28301.1    ABLF02017401    GEZM01033083    JAV84424.1    GGMR01016004    MBY28623.1    GEHC01000888    JAV46757.1    LBMM01008871    KMQ88569.1    GEHC01000891    JAV46754.1    GBYB01013920    JAG83687.1    ABLF02022032    GGMS01012726    MBY81929.1    KA649989    AFP64618.1    LBMM01006880    KMQ90234.1    GAKP01001563    JAC57389.1    GAKP01014483    JAC44469.1    ABLF02017561    ABLF02041657    ABLF02042885    ABLF02024793    GAKP01008942    JAC50010.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    EF710649    ACE75273.1   
Pfam
PF00665   rve        + More
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF00078   RVT_1
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF09668   Asp_protease
PF03732   Retrotrans_gag
PF12384   Peptidase_A2B
PF13873   Myb_DNA-bind_5
PF16064   DUF4806
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR041577   RT_RNaseH_2       
IPR003034   SAP_dom       
IPR018061   Retropepsins       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR005162   Retrotrans_gag_dom       
IPR024650   Peptidase_A2B       
IPR034145   RP_RTVL-H-like       
IPR028002   Myb_DNA-bind_5       
IPR032071   DUF4806       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       
Gene 3D
PDB
4OL8     E-value=3.93369e-65,     Score=635

Ontologies

Topology

Length:
1327
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0139
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00038
outside
1  -  1327
 
 

Population Genetic Test Statistics

Pi
3.020135
Theta
5.315368
Tajima's D
-1.395941
CLR
215.82728
CSRT
0.0671966401679916
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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