Gene

KWMTBOMO07490

Pre Gene Modal

BGIBMGA003203

Annotation

blastopia_polyprotein_[Lasius_niger]

Location

Bomo_Chr12(-):14301734-14305822      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.486

CDS

ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGAAGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGTATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGAAGAAAGAACCTATTTACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGCCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGGCTACGGCTAGCAGCGCGAGAACGGAGCAGCAACCGAAACACACGTATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTGACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATGAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTAATATCAAGTGAACAATTTAAAACAAACATTGAAATCGACGGCTACACGTATCGTGATATAATATTTTATGTGATTCCTAGAGACAGTATACCTATTAAAGTGATATTGGGACATGAATTTTTAAGAAATGTTATTACAGTTATGAAAGATGGTTTGGTATGGATGAAACCAAATGATTGGTTGTTTAAGGTAAATTGTTTTCCATGTTCTATTGACATTGTAGGTCATGTTATGAATGAAAATGTGAGGAATGAAGTGACTAGGTTAGTAGATGAATATCGGCCATGTCAAACTAAAGAGGCTCCCATTGAGTTGAAAATCACACTTAAAGACGACATCCCAGTGGCTCAACGACCACGACGCATCTCACCAAAAGAACAGGATGAGGTAGATAAACAGGTTAAGGAGTGGCTGGAACAAGGAGTTATTCGGGTAAGCTTTTCTGAATATACTAGCCCAATTGTTCTTGTCAGAAAGAAAAACGGAAACATAAGAATATGTGTTGATTATAGATTAATTAATAGGAAAATGCTCAAGGATGAATACCCGCTACCCATTATCGATGAACTTATTGACAGACTGGCACCTGCGAGAATATTTAGTGCACTTGATCTTAAAAATGGATTTTTTCATTTAAGGGTCAGCAAGGATTCTATTAAGTATACATCTTTTGTAACAATGAACGGCCAATATGAATTTTTAAAGGCACCCTTTGGTTTATCAATTTGTCCCAAAGTTTTTACAAGATTTATTTCAATAATATTTAGAGACTTGATAACGAGGGGTATTGTCATAGTATTTATCGATGATTTGTTGATACCGGCTATAAATGAAGCTCAAGCTGTTGCACGATTGCGAGAAGTATTACAATTGGCTATGGAGTACGGATTACAAATAAACTGGAAGAAATCTCAATTATTAGTAAGAAAAGTGGAATATTTAGGACATGTTATTGAAGGTGGAACAGTTATGCCATCATCGGGAAAGACAGATGCTGTCATTAAATTTCCTGAGCCGAGAAATGAGAAGCAACTACAAAGTTTCTTAGGACTTTGTTCCTATTTTAGAAAATACATACAAAATTATGCAGTGATAGCACGACCTCTTACTGATATGTTAAGAAAGGATAAGAAGTTTGAATTTAACAATGAACATAGATTAGTTTTCAATATGCTTAAGGAAAAGTTGACCAGTAAACCTGTATTGAAAATTTATGAACCAAAAGCAGAAACAGAACTTCATACAGATGCCTCAAGTATAGCATATGCGGCTATATTATTACAGAAAGATGACAACAGTGAACTACATCCAGTACATTATATGAGCAAGCGAACAACTGACGATGAGAGTAAATATACAAGTTATGAGCTAGAAGCTTTGGCTATAATAGAAGGTATAAAGAAGTTTAGACATTATTTATACGGAAAGCATTTTAAGATAGTTACAGACTGCAAAGCTTTTCAAATGACACTGAATAAAAAAGATCTAGCAATGAGTACAAGAGTGGCACGATGGATATTGTTCTTACAAGATTATGATTTCACTATTGAACATCGTGAAGGTTCGAAGATGAAACACACAGATGCTCTAAGCCGAAACCCATATGTAGCTCTTATATTTTCAGACCTACATAGTGATTTAAGACGTGCGCAAGAGAGTGACAACGGATTAAATGCAATTATGAATATTCTGAGAGATGGTAAACTATATAATGACTTTTATTTGCAAGGAGGATTACTCTGCAAGGGACCACAACATTGTTTGGTTGTACCACAGAAGATGGAAATTGAAATTATTAAGAGGGCGCATGATAATGGTCATTTTTCAAAGAAGAAAACAATGGAATTGATTAATAAGGATTATTACATACCAAAATTAGAGAAAAAGATTGAGGATTATATTGCTACATGCATACCTTGTCTGTTAGCATCCCGTAAAGAAGGTAAACGAGAAGGATTTTTGAATCCCATAGAAAAGGGTGACACACCATTACATACACTTCACCTGGACCACATTGGACCACTTACGGAGACACGTAAGCAATATAATTACATATTGACTATTGTTGACGCATTCACCAAGTTTGTATGGTTGTTCCCTACAAAGAGTACATCTACCCAAGAAGTGTTAAATAAGCTGGAAATACATCAACAAGTATTTGGTAATCCTATAAGAATTATTTCAGATAGAGGGACTGCATTTACGAGTAACGATTTTGCACAGTACTGTAAAGAGGAAGAAATAGAGCATGTAAAAATAACAACAGGGGTTCCCAGAGGAAACGGTCAGGTTGAAAGGGTTCATAGAACAATAATTTCAGTACTGACAAAACTTTCAGTTGAGAAACCTACATTGTGGTATAAGTTGGTAAGCCGAGTTCAAAGAGCACTCAACAGTACTTACCACAGGAGTATAAATAGTACCCCATTTCAATTACTCTTTGGAATAAAAATGAAGAGGAAAGAAGATATTCAATTACTGGACCTTTTGATGGAAGAAGAAAGACACAATTTCATTGACAGTAGAGAAGAACTTAGGAAGGAAGCGAAGAAACAAATATTTAAAGTACAAGAAGAAAATAGAAGAAATTACAACAAGAAAATGAAAGAATGTACTATATACAAGGAAGGCGACTTAGTAGCTGTGAAAAGGACTCAGTTTGGTACAGGAATGAAACTGAAACCAAAGTTTTTGGGACCATATCGAATAGTAAAGGTCAAAAGAAAGAATAGATACAATGTTGAGAAGGCTGACGCACAAGTTGAAGGCCCTAACAAGACTACTACATCTGCTGATTTTATGAAAAAGTGGCCTGATTACTTAAGTGACTGA

Protein

MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRKFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMKKEPIYGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSATASSARTEQQPKHTYIATTQEGANTIFENQSDEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYEQIGSPTCFKNVNTVLTGLGSSKVISSEQFKTNIEIDGYTYRDIIFYVIPRDSIPIKVILGHEFLRNVITVMKDGLVWMKPNDWLFKVNCFPCSIDIVGHVMNENVRNEVTRLVDEYRPCQTKEAPIELKITLKDDIPVAQRPRRISPKEQDEVDKQVKEWLEQGVIRVSFSEYTSPIVLVRKKNGNIRICVDYRLINRKMLKDEYPLPIIDELIDRLAPARIFSALDLKNGFFHLRVSKDSIKYTSFVTMNGQYEFLKAPFGLSICPKVFTRFISIIFRDLITRGIVIVFIDDLLIPAINEAQAVARLREVLQLAMEYGLQINWKKSQLLVRKVEYLGHVIEGGTVMPSSGKTDAVIKFPEPRNEKQLQSFLGLCSYFRKYIQNYAVIARPLTDMLRKDKKFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDDESKYTSYELEALAIIEGIKKFRHYLYGKHFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRDGKLYNDFYLQGGLLCKGPQHCLVVPQKMEIEIIKRAHDNGHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLASRKEGKREGFLNPIEKGDTPLHTLHLDHIGPLTETRKQYNYILTIVDAFTKFVWLFPTKSTSTQEVLNKLEIHQQVFGNPIRIISDRGTAFTSNDFAQYCKEEEIEHVKITTGVPRGNGQVERVHRTIISVLTKLSVEKPTLWYKLVSRVQRALNSTYHRSINSTPFQLLFGIKMKRKEDIQLLDLLMEEERHNFIDSREELRKEAKKQIFKVQEENRRNYNKKMKECTIYKEGDLVAVKRTQFGTGMKLKPKFLGPYRIVKVKRKNRYNVEKADAQVEGPNKTTTSADFMKKWPDYLSD

Uniprot

A0A023EZG2   A0A023EYH9   A0A0J7K9X8   A0A023EY26   A0A023EYF0   A0A023F013   + More
J9JQ65   A0A0J7KLK4   A0A0J7NF11   W8B0V9   A0A0A1XB16   A0A0A1XFE9   A0A0J7K890   A0A1W7R6L8   A0A2M4AEU2   W8APB2   J9JZ77   A0A034VKV9   A0A034VLR3   W8C8Q1   X1X261   A0A2M4CKM2   A0A034VAM6   Q961S4   Q24262   A0A224XHR1   X1WPP0   X1X5H2   A0A2S2P032   A0A2S2NKJ2   A0A2S2NFQ4   A0A2H8TRV6   J9JJ45   J9LBS9   X1XU14   A0A1W7R6H1   A0A2S2PFS2   X1XU22   A0A1Y1MFA9   A0A2S2PGQ9   A0A1W7R6G2   A0A0J7KEC9   A0A1W7R6G1   A0A0C9RXL6   X1XD76   A0A2S2QVZ0   T1PMR9   A0A0J7KJ08   A0A034WRX5   A0A034VPR8   J9KLX4   X1XU38   A0A034W795   A0A0A9Z954   B7S8P8  

Pubmed

25474469    24495485    25830018    25348373    8055714    28004739    + More
25401762   

EMBL

GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    LBMM01010976    KMQ87102.1    + More
GBBI01004477    JAC14235.1    GBBI01004549    JAC14163.1    GBBI01004613    JAC14099.1    ABLF02005846    LBMM01005919    KMQ91096.1    KMQ91095.1    GAMC01015907    JAB90648.1    GBXI01005773    JAD08519.1    GBXI01004632    JAD09660.1    LBMM01011782    KMQ86633.1    GEHC01000930    JAV46715.1    GGFK01005990    MBW39311.1    GAMC01020207    JAB86348.1    ABLF02014660    ABLF02042774    GAKP01016235    JAC42717.1    GAKP01016237    JAC42715.1    GAMC01007326    JAB99229.1    ABLF02005127    ABLF02005129    ABLF02007401    GGFL01001689    MBW65867.1    GAKP01019383    JAC39569.1    AY050234    AAK84933.1    Z27119    CAA81643.1    GFTR01008753    JAW07673.1    ABLF02033943    ABLF02042737    ABLF02004401    ABLF02013544    ABLF02013550    GGMR01009949    MBY22568.1    GGMR01005091    MBY17710.1    GGMR01003388    MBY16007.1    GFXV01005120    MBW16925.1    ABLF02008401    ABLF02008404    ABLF02041876    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GEHC01000876    JAV46769.1    GGMR01015682    MBY28301.1    ABLF02017401    GEZM01033083    JAV84424.1    GGMR01016004    MBY28623.1    GEHC01000888    JAV46757.1    LBMM01008871    KMQ88569.1    GEHC01000891    JAV46754.1    GBYB01013920    JAG83687.1    ABLF02022032    GGMS01012726    MBY81929.1    KA649989    AFP64618.1    LBMM01006880    KMQ90234.1    GAKP01001563    JAC57389.1    GAKP01014483    JAC44469.1    ABLF02017561    ABLF02041657    ABLF02042885    ABLF02024793    GAKP01008942    JAC50010.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    EF710649    ACE75273.1   

Proteomes

UP000036403    UP000007819   

PRIDE

Q961S4    Q24262   

Pfam

PF00665   rve        + More
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF00078   RVT_1
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF09668   Asp_protease
PF03732   Retrotrans_gag
PF12384   Peptidase_A2B
PF13873   Myb_DNA-bind_5
PF16064   DUF4806

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR041577   RT_RNaseH_2       
IPR003034   SAP_dom       
IPR018061   Retropepsins       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR005162   Retrotrans_gag_dom       
IPR024650   Peptidase_A2B       
IPR034145   RP_RTVL-H-like       
IPR028002   Myb_DNA-bind_5       
IPR032071   DUF4806       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd06095  RP_RTVL_H_like

ProteinModelPortal

A0A023EZG2   A0A023EYH9   A0A0J7K9X8   A0A023EY26   A0A023EYF0   A0A023F013   + More
J9JQ65   A0A0J7KLK4   A0A0J7NF11   W8B0V9   A0A0A1XB16   A0A0A1XFE9   A0A0J7K890   A0A1W7R6L8   A0A2M4AEU2   W8APB2   J9JZ77   A0A034VKV9   A0A034VLR3   W8C8Q1   X1X261   A0A2M4CKM2   A0A034VAM6   Q961S4   Q24262   A0A224XHR1   X1WPP0   X1X5H2   A0A2S2P032   A0A2S2NKJ2   A0A2S2NFQ4   A0A2H8TRV6   J9JJ45   J9LBS9   X1XU14   A0A1W7R6H1   A0A2S2PFS2   X1XU22   A0A1Y1MFA9   A0A2S2PGQ9   A0A1W7R6G2   A0A0J7KEC9   A0A1W7R6G1   A0A0C9RXL6   X1XD76   A0A2S2QVZ0   T1PMR9   A0A0J7KJ08   A0A034WRX5   A0A034VPR8   J9KLX4   X1XU38   A0A034W795   A0A0A9Z954   B7S8P8  

PDB

4OL8     E-value=3.93369e-65,     Score=635

KEGG

105842320    no KO assigned | (RefSeq) uncharacterized LOC105842320

GO

GO:0003676   GO:0004190   GO:0008270   GO:0015074   GO:0003964   GO:0005216   GO:0006811   GO:0005509   GO:0016042   GO:0016020   GO:0003707   GO:0051537  

Length:

1327

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0139

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00038

outside

1  -  1327

 

 

Pi

3.020135

Theta

5.315368

Tajima's D

-1.395941

CLR

215.82728

CSRT

0.0671966401679916

Interpretation

Uncertain