Silkworm Genome Informatics Database

Gene

KWMTBOMO07471

Pre Gene Modal

BGIBMGA005210

Annotation

PREDICTED:_la-related_protein_7_[Amyelois_transitella]

Location

Bomo_Chr12(-):13881595-13887891 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.713

CDS

ATGCACAAACCGTGCCAGAGCCAAAAAATAAAGAAGAAGAAGTTCGTTTTGTTTTGCATTTTTGTTTTAAGTAGGTCAACAATTATGTCAGAATCTGAAAATCTTGAGAACGCTGATCAAAATCCCAAACATGAAAACAGTGCAAGAAAGAGGGTTAGGCACCGAAAAAAACTAATTTACGAGAAAATACTCAAGCAGATGGAGTTTTACTTTAGCGACGCAAACTTAACTAAAGATAGGTACTTAGGTGAATTAGTTAAAAACGATCCCTATGTCGCTCTGGAGGTTTTTCTGAAATTTAATAAAATCAGATCAATGACACAGGATATAGTGGATATAGCTAAAGCTATGAAACATTCCACTATGCTCGAATTATCTGAAGATAAACTTAAGGTTAAGAGGAAAACATCAGTTATTTCATATGATGCGGATGCTAGGACAGTGTATGTTGAGTCTATTCCTGTGACTGCCAGCAGAGACTGGCTAGAACGAGTGTTCTCCGACTTTGGCACTGTGGTGTACATCTCATTACCTAAATTTAAGAACACACAGAAGATTAAGGGATATGGTTTCATAGAGTTTAACACAACAGAGGAAGCTCAAAAATGCATTAATACTTTCACCAAAATGGGTTGTAAGCTCCCAACATATATGCCGCCAGAAGACCTGTCTTCCATTAAAATGTTTTCGGTAGAAGAGAGCCCAGAAAACTCAACAGATATTAAAGAAGGAAAAGATGAAGATCCCCCAAAAAAGAAGAAAAAGAAGGAGAAAAAACCACCAAAAGGTCTGGACACGAAGACTAATGAACTTGATAGTGATAAAAGAGTTGATACACCAACTGAGACCAAAACATTTACAGACACTGAGTCAAGAGATGAGGCAACCAGCCAAGATGAGTCTAAGAACTGTGAGGAGACGACAAGGAAGAAAAAATTTAAAAAACGCACCACTAAGGAAAAGAAAGGAAAGAACGGCTTAGAGAAAAATGAAGCTCCCAAAGGCGCCCTTTGGGGATTGCAGGTTCTCGCCAAAAAAGAGTGGAAGTCTCTAAGGAATAAGTACTTAAATTTACAACGAAAATATATGAAAGAATTGAAAAATGAGCTACAAAATAAGAAACACTATATGAGAATACCACCTCCAGCTTCTCCAACTGGAGAAGTGAATGCATCTACCGATACCAATGTAAATGAAAATTTAGTAATGCCAGAAAAAATCCCTGGAGTTTTTGTTAAAGAGAAGCTACTAGAACCATGTATCGACGTAAGATTAACTAAAAGGACGATACGAACCAACGTGCACGTGTTACACGTAGACGTGAAGGAGAGTCAGTCAGAAGTCGTCATTAGATTCGATTCCCCTAAAGCTGCTGATGAGTACTGCGCGAACTCTCACAAGCGGGCCCGCGTGCTGTCGGGCGCGGAGGAGCAGGCGCAGTGGGGCGCGGCGCGCGCGGCCCGGCGCCGGCCCCGCGGCCGCACGCGGCTACTCGCGCGCCGCACGCACGCGCTGCTCGCGCCCGCCTCGCCGCAACCCACCAACACGCATCTAAGGTTCGACGAGGAATAA

Protein

MHKPCQSQKIKKKKFVLFCIFVLSRSTIMSESENLENADQNPKHENSARKRVRHRKKLIYEKILKQMEFYFSDANLTKDRYLGELVKNDPYVALEVFLKFNKIRSMTQDIVDIAKAMKHSTMLELSEDKLKVKRKTSVISYDADARTVYVESIPVTASRDWLERVFSDFGTVVYISLPKFKNTQKIKGYGFIEFNTTEEAQKCINTFTKMGCKLPTYMPPEDLSSIKMFSVEESPENSTDIKEGKDEDPPKKKKKKEKKPPKGLDTKTNELDSDKRVDTPTETKTFTDTESRDEATSQDESKNCEETTRKKKFKKRTTKEKKGKNGLEKNEAPKGALWGLQVLAKKEWKSLRNKYLNLQRKYMKELKNELQNKKHYMRIPPPASPTGEVNASTDTNVNENLVMPEKIPGVFVKEKLLEPCIDVRLTKRTIRTNVHVLHVDVKESQSEVVIRFDSPKAADEYCANSHKRARVLSGAEEQAQWGAARAARRRPRGRTRLLARRTHALLAPASPQPTNTHLRFDEE

Uniprot

H9J6R8 A0A2A4JFQ4 A0A2H1VCF0 S4PLV7 A0A212FFA7 A0A0N1IFW3 + More
A0A194PUZ7 A0A1I8MSB8 U5ETU4 E9GNC3

Pubmed

19121390 23622113 22118469 26354079 25315136 21292972 + More

EMBL

BABH01038142 NWSH01001749 PCG70253.1 ODYU01001545 SOQ37914.1 GAIX01003835 + More
JAA88725.1 AGBW02008840 OWR52416.1 KQ460636 KPJ13394.1 KQ459592 KPI96813.1 GANO01002624 JAB57247.1 GL732554 EFX79006.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000095301 + More
UP000000305

PRIDE

H9J6R8

Pfam

PF00076   RRM_1        + More
PF05383   La
PF08777   RRM_3

Interpro

IPR036390   WH_DNA-bd_sf        + More
IPR035979   RBD_domain_sf
IPR036388   WH-like_DNA-bd_sf
IPR002344   Lupus_La
IPR006630   La_HTH
IPR034887   LARP7_RRM1
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034910   LARP7_RRM2
IPR014886   La_RRM

SUPFAM

SSF54928 SSF54928 + More
SSF46785 SSF46785

Gene 3D

1.10.10.10 3.30.70.330

CDD

cd12290 RRM1_LARP7
cd12542 RRM2_LARP7

ProteinModelPortal

H9J6R8 A0A2A4JFQ4 A0A2H1VCF0 S4PLV7 A0A212FFA7 A0A0N1IFW3 + More
A0A194PUZ7 A0A1I8MSB8 U5ETU4 E9GNC3

PDB

4WKR E-value=2.84527e-26, Score=296

KEGG

101740326 K15191 La-related protein 7 | (RefSeq) la-related protein 7

GO

GO:0006396 GO:0005634 GO:1990904 GO:0003723 GO:0000166 GO:0003676 GO:0030529 GO:0008237 GO:0016020 GO:0003707 GO:0051537

Length:

523

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11074

Exp number, first 60 AAs:

0.10987

Total prob of N-in:

0.01156

outside

1 - 523

Pi

17.965596

Theta

17.296695

Tajima's D

-0.720165

CLR

0.641473

CSRT

0.194140292985351

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics