SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07469
Pre Gene Modal
BGIBMGA005211
Annotation
PREDICTED:_uncharacterized_protein_LOC106132814_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.731
 

Sequence

CDS
ATGCAACTGCCCGAAACACCGCCACCGCCTTTGGCGCCTCTTTGGGACCGCGTTTTGCGAGCTAGAGCGCTGCCTCCGGATTTGGACGTCGAGCTCCTGTATATCGCCATAAGGGATAGACTCACCCACCCAGAATGGGAAGTCCGATTGCACGCACTGAGGGTGCTTGCCGATCTACTGCCGCTGTCCGGGAATGCTCTGGCGTTTCCCTTCGATCAAGTGGTCGACAATTTGGGCCATAGTTCGCCGAACGTTCGGAAAGCCGCGCTCGACGCTTTGAAAGTGTTCTGCACTCATTGTGAAGATCCGGAATGTGCTGCCCAGGCTATAATGGACAAATGCTCGCACCAGAACATCAGGCCACATTCGGCAAACATTGAAATGAAGTTAAATGTCGTGACCGGATTAATATTATCGATACCTTCCTTGATAGGAATATTAAAACGAAGAAATCATGCATTAGATATATTTCCCATTTTTCAAACTTTAGGCGAAAAATTATTTGATCCTGTACACGCTGATGTGGCTCAACGATCCTTGATCAAATTGAGAAGAGTCTGCGGGCAACGGGATTACATGATGTGCTTGTCAAAATTAGACCGTAGAGTACATGAGAAATTTCGCATACTCTGCGAAACTTACGATGAAGATTCGTTGGATGTGTACTACGCGCCAAGGAAAAACATTTTCAGGGATAACAATAACCAGCAGTCGTTTAAGTTAAATCACGTATCTAACAAAACTGTACCTACTCCTTTGAGGATATCTGCAGAGTCCTCTTCGGATGACTCTTTTGCGAGAATGTCTTTCTACAATAACAACTTCGCTAAAGTTATTATCGAGACTGAAATAAAATTCGACTCCGATACTGCGATCACGATGACGGTCCTCGAAGAAAACGAGACTGAGTCGGAACTGAATACAGTGAGTGAGGAGGATTACGACAGCTCCGACATGAATATGCTAAGGTACAGCGACGGAGATTCCGAAGACACCGACGTGGTAGTGAAAAGGGTACGGTTTGGTGGTGAAGTAGTGAAAATTAGAACTCCCGACAGTGAAAATACGACCACCGATGACGACCACAAAAATAATCGAGCCATCACAGAAACTGATAATGTTGAAGTAATTTCAACTAGGACCATTGATACCAAGACGAACGATAACCGTGAATCATTGGAAAATTCACAAAAAAAACAAACAAAAAGAAGTGGCATTCCACTGCCTGTGATTCAGAACACAAATACCAATAAAAACTCATCTAATTACAACAAGTCGAAGTTAAAATCGAAGTCTTTGAGCGAGTTGTACGATTATTTTAAAACGAAGAACGATGTTGACGGAAAAACCAAAGAAAATTCTGGGTTTGCTTTAACACTCTCAGAGATACATTCTCCGGAAAAAGTGCCCAGTCCTGTGGGAACACATAGGGAAGTCGAGGTGCTCCATAATTTACAACGGAGTCCCGTGGTGTCTCCGAGGCGACAACAGACACAAGTTTTTCTGGAACAGAACGGATTCATCCTAAATCTGTTATCGTCTTCTCATGCTGATGAAGATCTGTTTTCTCCGAAACCTTTAACGCCACTTCAGCCACATTACGACTGGGAGGATTTGAATATTTTACCTCAATATGTTTCCGATCAACTACACAATACGGCAAACTGGATAGCAGCAGTGAAAGCGGCGGATCAACTCCACAGCGCTCTGCTAGACCCGGAGAATGTAAGACGAGTTGAGCCTGCCGCGAAATCGCTGGTGCAACACATGTGGGCTCTTAGTGACGCGGTGTCAGCTGCTAAAGCTCCCGCAGAAGGTGCGGTGTGTGCTTTAGTTCGGGCAGCCAGTAACGACTGCGCGCGACACCTGCTGCCCGTCCTCGTCGCCAGGATGGCCAGGGAGCCGCTGCCGTCTGCTCTTCCACATGCCATGCTCCAGCGACTAGCCTTGCATCACTTAGTCGACCTTATATTTGATCCGTCCATGATTGGCGTAAGTGAGAGCATCATTAAAACTCTGATATAA
Protein
MQLPETPPPPLAPLWDRVLRARALPPDLDVELLYIAIRDRLTHPEWEVRLHALRVLADLLPLSGNALAFPFDQVVDNLGHSSPNVRKAALDALKVFCTHCEDPECAAQAIMDKCSHQNIRPHSANIEMKLNVVTGLILSIPSLIGILKRRNHALDIFPIFQTLGEKLFDPVHADVAQRSLIKLRRVCGQRDYMMCLSKLDRRVHEKFRILCETYDEDSLDVYYAPRKNIFRDNNNQQSFKLNHVSNKTVPTPLRISAESSSDDSFARMSFYNNNFAKVIIETEIKFDSDTAITMTVLEENETESELNTVSEEDYDSSDMNMLRYSDGDSEDTDVVVKRVRFGGEVVKIRTPDSENTTTDDDHKNNRAITETDNVEVISTRTIDTKTNDNRESLENSQKKQTKRSGIPLPVIQNTNTNKNSSNYNKSKLKSKSLSELYDYFKTKNDVDGKTKENSGFALTLSEIHSPEKVPSPVGTHREVEVLHNLQRSPVVSPRRQQTQVFLEQNGFILNLLSSSHADEDLFSPKPLTPLQPHYDWEDLNILPQYVSDQLHNTANWIAAVKAADQLHSALLDPENVRRVEPAAKSLVQHMWALSDAVSAAKAPAEGAVCALVRAASNDCARHLLPVLVARMAREPLPSALPHAMLQRLALHHLVDLIFDPSMIGVSESIIKTLI

Summary

Pfam
PF12348   CLASP_N        + More
PF02985   HEAT
Interpro
IPR011989   ARM-like        + More
IPR024395   CLASP_N_dom       
IPR016024   ARM-type_fold       
IPR034085   TOG       
IPR000357   HEAT       
SUPFAM
SSF48371   SSF48371       
Gene 3D

Ontologies

Topology

Length:
674
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.20486
Exp number, first 60 AAs:
0.00109
Total prob of N-in:
0.00939
outside
1  -  674
 
 

Population Genetic Test Statistics

Pi
25.178971
Theta
21.688621
Tajima's D
0.449466
CLR
1.533567
CSRT
0.502924853757312
Interpretation
Uncertain
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