SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07468
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 2.526
 

Sequence

CDS
ATGGTACGTAACCGGAAAGTAGTGTTTGGTCTATTGAATGCAGGCTCTTTGTCTACAAATCGGGACGAATTTCTTTTGGCCATGGCTCGCCATTCTGTTGACGTTATGGCTATAAACGAGACTTGGCTTAGGTTTGGGGAGGAGGGCCGTGCACCTTGTGTGCCAGGCTACAGGCTCAAGCATATTCCTCGACCAGTTAGTATAAGGGGTGGTCGTGGTGGCGGGGTGGCCTTTTATCTCAGAGCTGATATAAGTGCTCGAGTGTGTAAGCACCCCGGACATTTGGATGTTGAACAGTTGTGGATAACAGTGAATTTTTGCGGGAAAAAGCTATTAATAGGCACTGCATATCGCCCCCCTTGGTCTGATCTGGAAAATTTCCTAGAGGGATTGACCGAAAGTATTGGTGCTATGGCTCCTTATGACAATATAGTGCTTCTCGGAGATTTTAATGTAAACCTATTGGACTGTAATTGTTCTAGAACAAAAAAAATAAATGAATTTCTAAGCCACTTCAGTCTCTCGCAAATAGTAAGGACTGCAACACACTTTATGAGTGGTAGTAGTACTTTGTTGGATGTTATTTGTACTGACGTTGGCGTTAATGATGTCGGGGTTGATTATATTCCCGAGCTTGGCCACCATGCTTTTGTCACATGTGAGACTTTGATCCGAAAGGAAAGACCAATGTCTAGAATGATAACTTCCCGTCAATTTAAAAATATCTTAGAGGAGTTCTTTACTCAGGATCTAAATATAATACCCTGGTCGAACATCACCCTCCTGGATGACGTTGACACGATGGTTTACACCTTTTCTATGTTTATTCTGTACCTGTACGATCTCCATGCTCCGCTCAAAACCCTGAAATTCAAAACACGTTCCACTCCTTGGATTACTGATAATGTCCGATTATTGTTTAAATTGCGAGATGCTGCACGCTATAGATCACATGTAACTCAGGTTCATAGTCATAAGCAGTATTATTTAGACCTTAAGAAGCAGGCAGCTAGCGTCTTAGCATCGGAAAAAAAGACCTACTACAACAATTATATTAATAGCAACTTCGGAAACCCTAAAAAGTTATGGAAAAATCTGAAATCTGATGTGATTCCGTCACATCAGGAGAAAGCATTGCCTGAACACCTTAATGACGCTAATGCTATCAATGAAGCTTTTCTGGATGTACCCGGGGTCTGTAGTTCTGACGTTTCAGGATACTCATTCTTTGAGTATTCTAACACATCTCCAAAGTTTACGCTTAAAACTGTCAACCAGGATACGGTTCTTAAGATTATTAACAGCATTAAATCCAACGCTCAAGGCACTGACGGGATAAGCGGTGAGATGATAACGCTCTCACTGCCTTCAACATTGGAGGCGATTACTAGCATTATCAATAAGTCCATTGATACAAATACATTTCCTGCTCAGTGGCGATGTTCTGTGGTTAGCCCTATTCCGAAAGTCACGCACCCTCAAGCTTTTAAAGATCTTAGGCCTATTAGTGTGTTGCCTTTTCTGTCCAAGATCTTGGAGAAGGTAGTTTACTCACAGGTAGCGGCATATATCGAATCAAATAACATTCTTCCAGAGTTTCAATCGGGTTTCAGAAAAAGCCGAGGAACGGCCGCTGCTCTTACTGACATTGTGGGTAATATTCTTGAGGCTCGGGACAGGAGCCAGGGTACGATACTGACGCTGCTGGATTTCTCACGGGCTTTTGATACAATTAACACTGCCTTACTCTTAGCAAAATTAACTCACTACGGGTTCTCTGATAATGCTGTGGAATGGTTTAGCAGTTATATGTCGAGTAGAACGCAATTTGTACAAATACGGAAAGAAGATGGAACTAAACTAACCTCTACTTCTAAGCCGATTACTAGAGGCGTTCCCCAAGGTTCTGTCCTGGGACCATTGTTGTTTATTTTGTACAGTGCAGATATCATTCAGTGTTTCAAGAATTGTAAATATCATGTTTATGCTGACGATGTACAATTATACCATTCTTTTGATGTTGGAGATACCCCTTCTGCTGTCAGTTTTATCAATGAGGATCTGCAGAGGATTGTCTTTTGGTCTGAACAGAATTCCTTAGTACTGAACCCCTCTAAGTCTAAATACATGATACTAGGCAGTAAATCTCAGATAGCAAAGATTTTATCACTCGATCCTAAGACTGAAGATTCTGTACTCGTTTAG
Protein
MVRNRKVVFGLLNAGSLSTNRDEFLLAMARHSVDVMAINETWLRFGEEGRAPCVPGYRLKHIPRPVSIRGGRGGGVAFYLRADISARVCKHPGHLDVEQLWITVNFCGKKLLIGTAYRPPWSDLENFLEGLTESIGAMAPYDNIVLLGDFNVNLLDCNCSRTKKINEFLSHFSLSQIVRTATHFMSGSSTLLDVICTDVGVNDVGVDYIPELGHHAFVTCETLIRKERPMSRMITSRQFKNILEEFFTQDLNIIPWSNITLLDDVDTMVYTFSMFILYLYDLHAPLKTLKFKTRSTPWITDNVRLLFKLRDAARYRSHVTQVHSHKQYYLDLKKQAASVLASEKKTYYNNYINSNFGNPKKLWKNLKSDVIPSHQEKALPEHLNDANAINEAFLDVPGVCSSDVSGYSFFEYSNTSPKFTLKTVNQDTVLKIINSIKSNAQGTDGISGEMITLSLPSTLEAITSIINKSIDTNTFPAQWRCSVVSPIPKVTHPQAFKDLRPISVLPFLSKILEKVVYSQVAAYIESNNILPEFQSGFRKSRGTAAALTDIVGNILEARDRSQGTILTLLDFSRAFDTINTALLLAKLTHYGFSDNAVEWFSSYMSSRTQFVQIRKEDGTKLTSTSKPITRGVPQGSVLGPLLFILYSADIIQCFKNCKYHVYADDVQLYHSFDVGDTPSAVSFINEDLQRIVFWSEQNSLVLNPSKSKYMILGSKSQIAKILSLDPKTEDSVLV

Summary

EMBL
NWSH01006271    PCG63543.1    KZ150070    PZC74075.1    NWSH01000998    PCG73165.1    + More
NWSH01000010    PCG80923.1    NWSH01001817    PCG70032.1    GEZM01051381    GEZM01051380    JAV74995.1    GEZM01041318    GEZM01041317    JAV80524.1    DNUT01000507    HBI41157.1    GEZM01045590    GEZM01045589    JAV77734.1    DMQF01000352    HAO15199.1    DMQF01000361    HAO15230.1    GEBQ01006447    JAT33530.1    GEZM01074146    JAV64657.1    GEBQ01020572    JAT19405.1    GEZM01007604    JAV95063.1    LBMM01010997    KMQ87090.1    LSMT01000554    PFX16333.1    GEZM01074147    JAV64656.1    DMQF01000030    HAO14052.1    GEZM01061184    JAV70703.1    DNUT01000056    HBI39512.1    GEZM01061183    JAV70704.1    GEZM01000581    JAV98361.1    GEZM01008907    JAV94684.1    LBMM01014048    KMQ85356.1    LSMT01000121    PFX26660.1    GANO01004066    JAB55805.1    NWSH01000817    PCG74070.1    DNUT01000451    HBI40968.1    GANO01004094    JAB55777.1    GEZM01061182    JAV70705.1    DMQF01000003    HAO13943.1    GEZM01061185    JAV70702.1    DMQF01000478    HAO15711.1    DNUT01000374    HBI40695.1    DNUT01000170    HBI39961.1    GBHO01012041    GBHO01012038    JAG31563.1    JAG31566.1    LSMT01001965    PFX11729.1    GANO01004275    JAB55596.1    GDRN01075630    GDRN01075629    JAI63022.1    GAMC01021037    GAMC01021036    JAB85519.1    DNUT01000297    HBI40414.1    LSMT01000021    PFX32582.1    GFDF01007660    JAV06424.1    GEHC01000940    JAV46705.1    DMQF01000157    HAO14486.1    GEHC01000909    JAV46736.1    GEHC01000896    JAV46749.1    GANO01001936    JAB57935.1    GAMC01021038    GAMC01021033    GAMC01021031    JAB85522.1    GANO01004238    JAB55633.1    GANO01004338    JAB55533.1    HAEI01014175    SBS16644.1    GANO01003893    JAB55978.1    HAEG01006811    SBR77686.1    RJVU01061422    ROJ36303.1    GANO01004070    JAB55801.1    LBMM01017805    KMQ83966.1    AAGJ04020328    GANO01004361    JAB55510.1    KQ041881    KKF21356.1    LSMT01001143    PFX12889.1    GEHC01000892    JAV46753.1    HAEC01001258    SBQ69335.1    RSAL01001570    RVE40758.1    LSMT01000067    PFX29357.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF18701   DUF5641
PF05380   Peptidase_A17
PF00665   rve
PF17917   RT_RNaseH
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR011011   Znf_FYVE_PHD       
IPR021109   Peptidase_aspartic_dom_sf       
IPR040676   DUF5641       
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57903   SSF57903       
SSF53098   SSF53098       
SSF50630   SSF50630       
Gene 3D
PDB
6AR3     E-value=1.33468e-05,     Score=119

Ontologies

Topology

Length:
734
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.323290000000001
Exp number, first 60 AAs:
0.0352700000000001
Total prob of N-in:
0.00734
outside
1  -  734
 
 

Population Genetic Test Statistics

Pi
19.354841
Theta
19.864501
Tajima's D
-0.413914
CLR
12.111719
CSRT
0.268136593170341
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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