Gene

KWMTBOMO07467

Pre Gene Modal

BGIBMGA009030

Annotation

PREDICTED:_uncharacterized_protein_LOC105842396_[Bombyx_mori]

Location

Bomo_Chr12(+):13860552-13861852      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.507 Mitochondrial   Reliability : 1.95

CDS

ATGGCAAAGTGTGGAGCATGTGGAAAATTCTTGTCAACCGCGGACTGTGCGCGTTGTAGTAAATGCAGTGACATCTTCCATAAAGGATGCGTGTCAATCCCATCTACGGGCGCTGCGCCTCGGGGCTGGATCTGCCCTAGTTGCTCAGCGAAAGTACCCCGTGGGGATAATACGGCAACTCCTGTACGAGGGTTGACAGCTGTCGGGGTGCATCACACTTCGAGCGAGGGAGATGTTGATGCAGATACGATGAATCGGTCGCTGGAGTCTCGTGTCGACCTTGGTTTAGAAATCCGATCTTTTAAGGATGAGCTGGTGGGCCTAAGAACTGACTTGAGAGAGTGCCGAAATGATATCGCTGAGTTTAAGGAGCTCCTCAAGTCTTGTCATGGACGCATCGACGCGGTGGAAGCCCGAGTGCTTGGTCTTGAGGCTCGTCTAGCAGAGATCGTCTCAACAGCAGCAGGTTCTGACTTGGATTCCACGGTGGCTGAACTTCGCATTCAGCTGCGTGAACGCGATCAGGACTTGCTCAGGAATGATATTGACATCATTGGTTTGCCGGAAGTTCGTGAAGAAAGCACTTGTCATTTAGTCCAGGTTGTGGCGGTAAAACTGGGAGTGAAACTTGACATGCGCGACATAGTTCACGCGGAGCGGATTGGTGCAGTAAGACGCAATTTCATTGAGGGCAACGACAATCGTCCTCGTATACTATCAGTACGACTGGCCCGTCGCTCGGTTCGCGATGCACTATTGAAGGGAGCCCGCGTGCGCCGTAACCTCTCCACTACTGATTTAGATGTACCTGGCCCCGTCCGTACTGTATATTTAAATGAACGTTTGTCCGCATATAACCGCAAGCTGTTTGGTACTACCCGTCAAAAGGGAAAGGATAAAGGTTGGAAGTATGTCTGGACCAAGGACGGACGAATTTATATTCGTCGTGGTGATGGTACTCCTGCGCTCAGAATCAGAGTTCAGGCCGACGTGGAGAAGCATTTTGGCCCGGATACAGTTTGA

Protein

MAKCGACGKFLSTADCARCSKCSDIFHKGCVSIPSTGAAPRGWICPSCSAKVPRGDNTATPVRGLTAVGVHHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDAVEARVLGLEARLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLRNDIDIIGLPEVREESTCHLVQVVAVKLGVKLDMRDIVHAERIGAVRRNFIEGNDNRPRILSVRLARRSVRDALLKGARVRRNLSTTDLDVPGPVRTVYLNERLSAYNRKLFGTTRQKGKDKGWKYVWTKDGRIYIRRGDGTPALRIRVQADVEKHFGPDTV

Uniprot

H9JHN2   A0A2H1WVR8   A0A2A4KAI6   A0A0N0PFG8   A0A194QNP5   A0A0L7LCM2   + More
A0A2H1WQP2   A0A2A4JDI4   A0A2A4JD92   A0A0L7LUR8   A0A0L7K2I9   A0A2W1C270   A0A2A4ITG1   A0A2W1BEV5   A0A2H1VU39   A0A0L7KL91   A0A0L7LMB4   A0A2H1WRH7   A0A2H1WIH0   A0A2A4JGT4   A0A0L7L864   A0A2A4K4X7   A0A2A4J0K9   A0A0L7KNH2   A0A2A4IZ17   A0A2A4J6Z0   A0A0L7LLF8   A0A0L7L3H2   A0A0L7L9T9   A0A2A4J6A9   A0A0L7K2S8   A0A0L7KW99   A0A0L7L532   A0A0L7KT58   A0A2A4J8T1   A0A0L7K2H2   A0A0L7LT54   A0A0L7LKW3   A0A0L7KSF2   A0A2W1BHR3   A0A0L7LLW9   A0A0L7KR27   A0A0L7L2Q0   A0A1E1WCX2   A0A0L7LR99   A0A1E1W4P9   A0A0L7LV21   A0A0L7KSE4   A0A0L7LJG0   A0A0L7KJT4   A0A0L7KMA8   A0A1E1W8N6   A0A1E1WU45   T1HCI2   T1HBQ9   T1HA40   A0A2H1WBH0   T1HAF0   A0A0L7L421   A0A2A4IU35   A0A2A4JQ98   A0A3S2NNK6   A0A3S2TB59   T1HBR1   A0A2H1W956   H9JC60   A0A0L7K2E3   A0A3S2NHU2   A0A194RCQ2   A0A194QEB0   A0A0L7LF48   A0A0L7KQ92   A0A0L7K4K4   A0A0L7KMZ2   A0A2W1BYU6   A0A2A4IXU4   A0A0L7KXQ5   A0A0K8ST40   A0A0L7KMA6   A0A0A9YA31   A0A2A4JBL7  

Pubmed

19121390    26354079    26227816    28756777    25401762   

EMBL

BABH01012931    BABH01012932    ODYU01011375    SOQ57082.1    NWSH01000010    PCG80924.1    + More
LADJ01030744    KPJ21224.1    KQ461191    KPJ07137.1    JTDY01001653    KOB73242.1    ODYU01010286    SOQ55282.1    NWSH01001817    PCG70031.1    NWSH01001982    PCG69514.1    JTDY01000042    KOB79218.1    JTDY01017010    KOB51869.1    KZ149908    PZC78213.1    NWSH01008646    PCG62462.1    KZ150150    PZC72841.1    ODYU01004417    SOQ44266.1    JTDY01009085    KOB64118.1    JTDY01000562    KOB76673.1    ODYU01010507    SOQ55661.1    ODYU01008890    SOQ52873.1    NWSH01001505    PCG71029.1    JTDY01002313    KOB71687.1    NWSH01000125    PCG79301.1    NWSH01003975    PCG65605.1    JTDY01007941    KOB64843.1    NWSH01005158    PCG64392.1    NWSH01002711    PCG67639.1    JTDY01000739    KOB76046.1    JTDY01003157    KOB70048.1    JTDY01002139    KOB72021.1    NWSH01002730    PCG67615.1    JTDY01014864    KOB51988.1    JTDY01005149    KOB67319.1    JTDY01002895    KOB70525.1    JTDY01006205    KOB66199.1    NWSH01002492    PCG68176.1    JTDY01017442    KOB51849.1    JTDY01000181    KOB78416.1    JTDY01000729    KOB76082.1    JTDY01006445    KOB66006.1    KZ150197    PZC72320.1    JTDY01000624    KOB76430.1    JTDY01007036    KOB65506.1    JTDY01003432    KOB69564.1    GDQN01006224    JAT84830.1    JTDY01000273    KOB77970.1    GDQN01009099    JAT81955.1    JTDY01000032    KOB79297.1    JTDY01006255    KOB66167.1    JTDY01000945    KOB75331.1    JTDY01009571    KOB63316.1    JTDY01009015    KOB64201.1    GDQN01007706    JAT83348.1    GDQN01000556    JAT90498.1    ACPB03011237    ACPB03014935    ACPB03024613    ACPB03027065    ODYU01007238    SOQ49844.1    ACPB03021827    KOB70049.1    NWSH01007563    PCG62908.1    NWSH01000826    PCG73989.1    RSAL01000024    RVE52218.1    RSAL01001410    RVE40802.1    ACPB03014947    ODYU01007128    SOQ49629.1    BABH01014938    JTDY01015045    KOB51976.1    RSAL01000033    RVE51438.1    KQ460397    KPJ15249.1    KQ459054    KPJ03878.1    JTDY01001455    KOB73826.1    JTDY01007401    KOB65231.1    JTDY01010989    KOB57787.1    JTDY01008292    KOB64643.1    KZ149914    PZC78000.1    NWSH01005418    PCG64228.1    JTDY01004632    KOB67925.1    GBRD01009465    JAG56359.1    JTDY01009133    KOB64064.1    GBHO01013672    JAG29932.1    NWSH01002191    PCG68944.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000015103    UP000283053    + More
UP000053268   

PRIDE

H9JHN2    H9JC60   

Pfam

PF03258   Baculo_FP        + More
PF00628   PHD
PF00076   RRM_1

Interpro

IPR019787   Znf_PHD-finger        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR004941   Baculo_FP       
IPR004244   Transposase_22       
IPR001841   Znf_RING       
IPR002219   PE/DAG-bd       
IPR027267   AH/BAR_dom_sf       
IPR036427   Bromodomain-like_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR034209   PUF60_RRM1       
IPR018527   Rubredoxin_Fe_BS       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF57903   SSF57903        + More
SSF103657   SSF103657       
SSF56219   SSF56219       
SSF54928   SSF54928       
SSF57667   SSF57667       

Gene 3D

3.30.40.10     1.20.920.10     3.30.70.330     3.60.10.10    

CDD

cd12370  RRM1_PUF60

ProteinModelPortal

H9JHN2   A0A2H1WVR8   A0A2A4KAI6   A0A0N0PFG8   A0A194QNP5   A0A0L7LCM2   + More
A0A2H1WQP2   A0A2A4JDI4   A0A2A4JD92   A0A0L7LUR8   A0A0L7K2I9   A0A2W1C270   A0A2A4ITG1   A0A2W1BEV5   A0A2H1VU39   A0A0L7KL91   A0A0L7LMB4   A0A2H1WRH7   A0A2H1WIH0   A0A2A4JGT4   A0A0L7L864   A0A2A4K4X7   A0A2A4J0K9   A0A0L7KNH2   A0A2A4IZ17   A0A2A4J6Z0   A0A0L7LLF8   A0A0L7L3H2   A0A0L7L9T9   A0A2A4J6A9   A0A0L7K2S8   A0A0L7KW99   A0A0L7L532   A0A0L7KT58   A0A2A4J8T1   A0A0L7K2H2   A0A0L7LT54   A0A0L7LKW3   A0A0L7KSF2   A0A2W1BHR3   A0A0L7LLW9   A0A0L7KR27   A0A0L7L2Q0   A0A1E1WCX2   A0A0L7LR99   A0A1E1W4P9   A0A0L7LV21   A0A0L7KSE4   A0A0L7LJG0   A0A0L7KJT4   A0A0L7KMA8   A0A1E1W8N6   A0A1E1WU45   T1HCI2   T1HBQ9   T1HA40   A0A2H1WBH0   T1HAF0   A0A0L7L421   A0A2A4IU35   A0A2A4JQ98   A0A3S2NNK6   A0A3S2TB59   T1HBR1   A0A2H1W956   H9JC60   A0A0L7K2E3   A0A3S2NHU2   A0A194RCQ2   A0A194QEB0   A0A0L7LF48   A0A0L7KQ92   A0A0L7K4K4   A0A0L7KMZ2   A0A2W1BYU6   A0A2A4IXU4   A0A0L7KXQ5   A0A0K8ST40   A0A0L7KMA6   A0A0A9YA31   A0A2A4JBL7  

PDB

5VAB     E-value=0.018982,     Score=88

KEGG

105842396    no KO assigned | (RefSeq) uncharacterized LOC105842396

GO

GO:0046872   GO:0035556   GO:0003723   GO:0008168   GO:0005515   GO:0008270   GO:0004842   GO:0005680   GO:0006520   GO:0006508   GO:0008237   GO:0016020   GO:0003707   GO:0051537  

PANTHER

PTHR11505  

Length:

340

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00059

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.02340

outside

1  -  340

 

 

Pi

20.494647

Theta

27.102303

Tajima's D

-0.749918

CLR

0.013739

CSRT

0.187840607969602

Interpretation

Uncertain