Silkworm Genome Informatics Database

Gene

KWMTBOMO07462

Annotation

PREDICTED:_RNA-binding_protein_42-like_[Bombyx_mori]

Location

Bomo_Chr12(-):13834935-13837731 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.42

CDS

ATGCAAGATGAGATGTCCAGGTTTGAAGCTGAGATATCAGGAGGCACTGGACGTGCAGTGATCGGATCTGGCACATGGGATGCCGTGCAAGCCCGTCTAGAACGGGTGGCTCCAATGCAGGCCCCACCAGAACCCAGTCCTTCGATTATGGCACCATACGAGCCTACACTTGTGTACCCTGCAGTACCTCCACCACCACCACCACCATCCTTACTGGTGCCAGCCCAAGTGCAAAGACTTCGAAGTTCAACCGCAGCTATGGATGGGTTTGGTAGTCCAATACCGTTCCTTCGGCCTGGACTACCAGGCCCACAATTAATTCCTCCACCTCCACCCAAACCTCAACCTGTGGTTCTGTCTGCTGCTCCTAAACTTTACAAGCAACCAAAAGAGGATGATGACAAAAAGGAGAAGTCTGCAAGTCGAAAACGGAATGTGACATATGTGTGA

Protein

MQDEMSRFEAEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPSIMAPYEPTLVYPAVPPPPPPPSLLVPAQVQRLRSSTAAMDGFGSPIPFLRPGLPGPQLIPPPPPKPQPVVLSAAPKLYKQPKEDDDKKEKSASRKRNVTYV

Uniprot

A0A3S2NJL1 A0A2A4JFP3 A0A194PVM9 A0A2H1VRR4 A0A0N0PCD1 A0A212FF51 + More
S4NHK1

Pubmed

26354079 22118469 23622113

EMBL

RSAL01000020 RVE52623.1 NWSH01001749 PCG70250.1 KQ459592 KPI96819.1 + More
ODYU01004038 SOQ43510.1 KQ460636 KPJ13389.1 AGBW02008864 OWR52337.1 GAIX01014339 JAA78221.1

Proteomes

UP000283053 UP000218220 UP000053268 UP000053240 UP000007151

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR034215   RBM42_RRM
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12383 RRM_RBM42

ProteinModelPortal

A0A3S2NJL1 A0A2A4JFP3 A0A194PVM9 A0A2H1VRR4 A0A0N0PCD1 A0A212FF51 + More
S4NHK1

KEGG

105841972 no KO assigned | (RefSeq) RNA-binding protein 42-like

GO

GO:0003723

Length:

149

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00243

Exp number, first 60 AAs:

0.00188

Total prob of N-in:

0.22430

outside

1 - 149

Pi

31.554209

Theta

28.579337

Tajima's D

0.691045

CLR

1.098463

CSRT

0.578321083945803

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics