Silkworm Genome Informatics Database

Gene

KWMTBOMO07461

Pre Gene Modal

BGIBMGA005213

Annotation

PREDICTED:_RNA-binding_protein_42-like_[Bombyx_mori]

Location

Bomo_Chr12(-):13831299-13833981 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.006 Nuclear Reliability : 1.551

CDS

ATGTTTGCATTAAACACTCATTTTCAGAAAAGAGATAGGTCGAGTGAGCCGCCAACGCCTGCTCCTGCGCCCCCAGCCCCCCTCGTCCCGCCCCCCGCACCTGTCATCACTGTTGATGTTACTGTTAAACCCAAGAAGGAGAAGAAAAACAGGAAGGTTGTGAGGACTGCAGGTGGTCAAGTGTGGGAGGATGTGACATTGCTAGATTGGCCTGATGATGATTTCAGAATGTTCTGTGGGGACCTCGGAAATGACGTTACCGATGAATTGCTTATCAGAACATTCAGCAAATACAGTTCATTCCAAAGGGCCAAAGTGATAAGAGACAAGCGAACAAATAAAAGCAAAGGGTTCGGTTTTGTTAGTTTCAAAGATCCGGGAGACTTCATTAAAGCCATGAAGGAAATGGATGGTCGGTACGTCGGCAGTCGTCCCATAAAACTACGCAAGAGCACCTGGAAGAATCGAGCCTTGGACATTGTGAGGAAAAAGGAGAAAGAGAAGGCCGCGTTACTTTCTTTACTGATGACTGGAAATAAAGGCTGA

Protein

MFALNTHFQKRDRSSEPPTPAPAPPAPLVPPPAPVITVDVTVKPKKEKKNRKVVRTAGGQVWEDVTLLDWPDDDFRMFCGDLGNDVTDELLIRTFSKYSSFQRAKVIRDKRTNKSKGFGFVSFKDPGDFIKAMKEMDGRYVGSRPIKLRKSTWKNRALDIVRKKEKEKAALLSLLMTGNKG

Uniprot

A0A0N0PCD1 A0A194PVM9 A0A212FF51 T1HCG1

Pubmed

26354079 22118469

EMBL

KQ460636 KPJ13389.1 KQ459592 KPI96819.1 AGBW02008864 OWR52337.1 + More
ACPB03009804 ACPB03009805

Proteomes

UP000053240 UP000053268 UP000007151 UP000015103

Pfam

PF00076 RRM_1

Interpro

IPR000504   RRM_dom        + More
IPR035979   RBD_domain_sf
IPR034215   RBM42_RRM
IPR012677   Nucleotide-bd_a/b_plait_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12383 RRM_RBM42

ProteinModelPortal

A0A0N0PCD1 A0A194PVM9 A0A212FF51 T1HCG1

PDB

6QX9 E-value=6.61744e-45, Score=451

KEGG

105841972 no KO assigned | (RefSeq) RNA-binding protein 42-like

GO

GO:0003723 GO:0003676 GO:0000166 GO:0004842 GO:0005680 GO:0006520 GO:0006508 GO:0008237 GO:0016020 GO:0003707 GO:0051537

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00916999999999999

Exp number, first 60 AAs:

0.00908999999999999

Total prob of N-in:

0.09685

outside

1 - 181

Pi

34.43171

Theta

32.005157

Tajima's D

0.239224

CLR

0.037319

CSRT

0.43802809859507

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics