SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07453
Pre Gene Modal
BGIBMGA005183
Annotation
PREDICTED:_von_Willebrand_factor_A_domain-containing_protein_DDB_G0286969-like_isoform_X1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.916
 

Sequence

CDS
ATGCTCATGGTCCAGACAAACGCTCAGCCGATGAAGAACAACAAACTGAAAGGCCCACCTCCTGTGCCTCCGCGACCAAATCAAAGTGTTGTGGCGGAGGCGCTGGCGAAAACGAGGAAGGCCGTTGCGGAATCGAAGGCCAACTTTACCAAGTCTCGTAGTTATTCTAAACAAGAGCACTCGAATAGCGGTGCGCGTTCTAAAACTTTGGAAAGAGCTAACACAGTGCAGCCGACAGTCTCGCCCAAACAAAATGGTTTGGCCCGTGTTAAGTCATTTATTAGAGACGTTATCAGCGACCGTAGTTCTTCGTCTGATGAGCGTAAATCCAGTGGTCAGAACTCGAGAAGAAGTTCGAGTGACAGTAGTTCAACACCTGCGGCTATCACAGTGAGAAAATCGAATGAATCACTCAACTCTAAAGCAGTTAAAACCTGTCGACAGATATTAGTGAGATCACTGTCGACGTCAAACAAATTAGATCAGCAAGATGCAAAATGCAAGGTTACAAAGTCATCTAGTTTTGCAGAAAAATCTTTGCCATTGCGTAAAGCTCCTCCACCGCCTCTCTCACCTAAACCTAAGTTAAAACCAATGAAACCATTACCGGTACAAAAACGTCCAAAGGTAAATACGCCAACGAAAGAATCACCTGAGATTAGTCTTTACGCTTCGCCAATAGACGCGAAACCACCTCGTAGTCCCCTGTCTGAGGCGCCTTATGCTTCAGTCGAGGAAGTTCAAGAATTCGATGACCGGCTTCGCAACAGTCCGTCGAGACAAATCGACAATATCGCGGATCACAAAGACCTCAGGATTGTTAATAACGAAACAGAAAATAAAAATAATAATTCGTTAGAAAGAAAAACATCTCAAGTAACAGAAATGTTAATCTCGGAAATATTAGCGAGCAGAAACAACAACAAAGACGAAGCTAATACGGTTATAGATAAAGGGAAAGATTCTGAGAATATCACCAAAGAGAACGAGTCACATCAGATGCAATTGATGAAGGACATGAACAATCACGAGATGTTGATTTATGAACTACAAACGATGCGGTCACAGTCTGACGTACCACAAAGTTTTGAAACGAAGGACATAGAAAGAAATGGACATTGCGATTCTGAAGATTCTGAACAAAACTACGCGATGTCCTCTGTGAACAGTGAAAATGTGGATGATGATTATGAACACGCTTACGCTTATATTGTTGATGATGATTTAAAATCTAGGTTACGTAAACAGTTCCGGGCGATCAGCACAATGTCGTTGCAAGGCCTGCCCCCTCTACCGAAGAGTCTCAGTGGCTTCGCGGAAGACGATCCGGATACTCCGGACCCTCCAGACACATCTAACGAAAAACCACCCACCGATCTTGATTCACAGCTCGTTTATCTCAAGAAAGAAATGGCCAGCCTGCGTCAGTTGGATCTGTCGCTGTTGTCCGAATTGTGGAGTCTGAGCGAGGCCATGGCGTCGTGGAGGAGACAGCTGGAACGGGCGCCGCGACTCAGACCAGCACCACCACCGCCCCCACCCATACACTACCTCAGGACATAG
Protein
MLMVQTNAQPMKNNKLKGPPPVPPRPNQSVVAEALAKTRKAVAESKANFTKSRSYSKQEHSNSGARSKTLERANTVQPTVSPKQNGLARVKSFIRDVISDRSSSSDERKSSGQNSRRSSSDSSSTPAAITVRKSNESLNSKAVKTCRQILVRSLSTSNKLDQQDAKCKVTKSSSFAEKSLPLRKAPPPPLSPKPKLKPMKPLPVQKRPKVNTPTKESPEISLYASPIDAKPPRSPLSEAPYASVEEVQEFDDRLRNSPSRQIDNIADHKDLRIVNNETENKNNNSLERKTSQVTEMLISEILASRNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERNGHCDSEDSEQNYAMSSVNSENVDDDYEHAYAYIVDDDLKSRLRKQFRAISTMSLQGLPPLPKSLSGFAEDDPDTPDPPDTSNEKPPTDLDSQLVYLKKEMASLRQLDLSLLSELWSLSEAMASWRRQLERAPRLRPAPPPPPPIHYLRT

Summary

Pfam
PF12861   zf-ANAPC11
Interpro
IPR001841   Znf_RING        + More
IPR024991   Apc11       
IPR013083   Znf_RING/FYVE/PHD       
Gene 3D

Ontologies

Topology

Length:
520
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00039
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00215
outside
1  -  520
 
 

Population Genetic Test Statistics

Pi
28.827367
Theta
25.969221
Tajima's D
0.271467
CLR
0.631678
CSRT
0.446277686115694
Interpretation
Uncertain
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