Gene

KWMTBOMO07449

Pre Gene Modal

BGIBMGA005217

Annotation

PREDICTED:_protein_D7-like_[Amyelois_transitella]

Location

Bomo_Chr12(-):13678781-13679522      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.302 Nuclear   Reliability : 1.637

CDS

ATGGATGATCCCTTCGTGTCATGCCCTTACAATCCAATTCACCGCGTACCAAGATCACGGCTGCAGCGCCATATTGTCAAATGTGAATGGATAAACCCAACAATGATTGCGTGCCCTTACAACGCAACACACAGGTATACCCAGGAAGACATGAAGTTTCACGTATTGAACTGCCCTTCTAAGACCTCTATATTTCCGATAGAGAAGCCTCCAAAAACAGTAGCCTCGATCACCACTCCCAAGATAATATTGCAGAAAGAATATTTACCAGAAACTGACCCAAACCATGAAATTTGGGATGACTGA

Protein

MDDPFVSCPYNPIHRVPRSRLQRHIVKCEWINPTMIACPYNATHRYTQEDMKFHVLNCPSKTSIFPIEKPPKTVASITTPKIILQKEYLPETDPNHEIWDD

Subunit

Heterodimer of an alpha and a beta subunit.

Similarity

Belongs to the integrin alpha chain family.

Uniprot

H9J6S5   A0A3S2M0N2   A0A0N1PI99   A0A212FLB7   A0A194Q108   A0A2A4JAK0   + More
A0A2H1VM90   K7J0Z9   A0A232F7R4   E2AX74   A0A195ESB0   A0A158NVW5   A0A151HYE8   A0A2P8XJ68   A0A182KB59   T1IXU3   A0A034WMN7   A0A2M4BXE6   A0A2M4BWG4   A0A2M4BWA6   A0A0T6B3K0   A0A1B0F9M1   A0A2M4CNL8   A0A023FP69   A0A2P8XM15   A0A226MRE7   A0A218U6Y7   W5J5D7   A0A1Y1MAZ4   Q5TXZ7   E2BA42   A0A1A9ZIK5   A0A091CTM5   A0A3B0JIZ5   A0A1Y1M8P8   A0A340Y675   A0A182N333   A0A2M4AQY5   B4KZ06   A0A1A9UL09   A0A1S3GGJ7   A0A023G1T0   A0A0A1XHV8   A0A336LTP1   A0A0K8TQS3   A0A2C9LKV6   Q16XK2   A0A0K8V5L7  

Pubmed

19121390    26354079    22118469    20075255    28648823    20798317    + More
21347285    29403074    25348373    24621616    20920257    23761445    28004739    9087549    12364791    14747013    17210077    17994087    25830018    26369729    15562597    17510324   

EMBL

BABH01038161    RSAL01000084    RVE48376.1    KQ460396    KPJ15336.1    AGBW02007808    + More
OWR54527.1    KQ459580    KPI99267.1    NWSH01002383    PCG68423.1    ODYU01003333    ODYU01006465    SOQ41949.1    SOQ48325.1    NNAY01000821    OXU26337.1    GL443520    EFN61957.1    KQ981993    KYN31113.1    ADTU01027560    KQ976730    KYM76412.1    PYGN01001947    PSN32050.1    JH431663    GAKP01003517    JAC55435.1    GGFJ01008257    MBW57398.1    GGFJ01008258    MBW57399.1    GGFJ01008224    MBW57365.1    LJIG01016061    KRT81733.1    CCAG010001572    GGFL01002687    MBW66865.1    GBBK01000940    JAC23542.1    PYGN01001740    PSN33047.1    AWGT02007838    OXB57710.1    MUZQ01000932    OWK49494.1    ADMH02002127    ETN58618.1    GEZM01037104    GEZM01037103    JAV82168.1    AAAB01005255    EAL42252.2    GL446664    EFN87451.1    KN124398    KFO21298.1    OUUW01000001    SPP75290.1    GEZM01037102    JAV82172.1    GGFK01009859    MBW43180.1    CH933809    EDW18898.1    GBBL01000367    JAC26953.1    GBXI01003750    JAD10542.1    UFQT01000186    SSX21320.1    GDAI01001348    JAI16255.1    CH477537    EAT39356.1    EAT39357.1    GDHF01018266    JAI34048.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000007151    UP000053268    UP000218220    + More
UP000002358    UP000215335    UP000000311    UP000078541    UP000005205    UP000078540    UP000245037    UP000075881    UP000092444    UP000198419    UP000197619    UP000000673    UP000007062    UP000008237    UP000092445    UP000028990    UP000268350    UP000265300    UP000075884    UP000009192    UP000078200    UP000081671    UP000076420    UP000008820   

PRIDE

H9J6S5   

Pfam

PF05253   zf-U11-48K        + More
PF01839   FG-GAP
PF08441   Integrin_alpha2

Interpro

IPR022776   TRM13/UPF0224_CHHC_Znf_dom        + More
IPR036236   Znf_C2H2_sf       
IPR028994   Integrin_alpha_N       
IPR007917   GTSF1_vertebrate       
IPR013519   Int_alpha_beta-p       
IPR013517   FG-GAP       
IPR000413   Integrin_alpha       
IPR013649   Integrin_alpha-2       
IPR018184   Integrin_alpha_C_CS       
IPR032695   Integrin_dom_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF69179   SSF69179       

Gene 3D

2.130.10.130    

ProteinModelPortal

H9J6S5   A0A3S2M0N2   A0A0N1PI99   A0A212FLB7   A0A194Q108   A0A2A4JAK0   + More
A0A2H1VM90   K7J0Z9   A0A232F7R4   E2AX74   A0A195ESB0   A0A158NVW5   A0A151HYE8   A0A2P8XJ68   A0A182KB59   T1IXU3   A0A034WMN7   A0A2M4BXE6   A0A2M4BWG4   A0A2M4BWA6   A0A0T6B3K0   A0A1B0F9M1   A0A2M4CNL8   A0A023FP69   A0A2P8XM15   A0A226MRE7   A0A218U6Y7   W5J5D7   A0A1Y1MAZ4   Q5TXZ7   E2BA42   A0A1A9ZIK5   A0A091CTM5   A0A3B0JIZ5   A0A1Y1M8P8   A0A340Y675   A0A182N333   A0A2M4AQY5   B4KZ06   A0A1A9UL09   A0A1S3GGJ7   A0A023G1T0   A0A0A1XHV8   A0A336LTP1   A0A0K8TQS3   A0A2C9LKV6   Q16XK2   A0A0K8V5L7  

KEGG

NA   

GO

GO:0007283   GO:0007229   GO:0007155   GO:0008305  

PANTHER

PTHR21402:SF9  

Subcellular location

Membrane  

Length:

101

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00363

Exp number, first 60 AAs:

0.00363

Total prob of N-in:

0.09959

outside

1  -  101

 

 

Pi

2.867353

Theta

5.455936

Tajima's D

-1.319614

CLR

5.454584

CSRT

0.08029598520074

Interpretation

Uncertain