Gene

KWMTBOMO07444

Pre Gene Modal

BGIBMGA005224

Annotation

PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(+):13480103-13511662      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.884

CDS

ATGGAGTCGGAACTCGAAAAAGTTCTGGATATCGCTGGTCACGGGCGGTACAACCTAATGGTGCTATTGGTTAGTAGCACCATTCACTTAGCGTCGATCCTGGATTTGCTCGGCTTCTGTGTCATCGTCCCGGCTGCGGCATGTGACTTGAAGTTAGGAATGAGAGAGATCAGTCTACTTACGTCCATACCTTTTGCAGGTTACCTTTCCGCGTTGCCATGGGGCTACTATGTTGACACGCACGGTAGAAGGAAGGCTATAATAATATCAACATCAGTGGGTGCCGTTTTCGCTACACTAACAACTTTTTCTACGTCTTTCACGATGATGCTGGTTTTGAAACTACTTGGATGTCTCTTTTCCACAGCTTCAATAACGCTTTCGATAACTTATTTGGGGGAGTGCACGGGAACGAGGAACAGGACTAGATACCTGTTAATCCTCAACTGTTTCAATCTAATATCTGATTTCATTTGCTACGCACTGGCCTACTTAATATTGGGCCTACAATTCGAAATACCTCTACCCTGGTTGGCCATAACATTCCGTCCTTGGCGATTGCTGACTCTGGTCATGGCAGTAATGCTGGCTGTTGGAGGCTTCGTGATCTTCTTCCTGCACGAGAGCCCCAAGTTTCTGGCGACCAAAGGACGTGTCGACGAAGCCTTGGAGGTTATGAAGACAGGATACGGCCTCAAGGACCGCGACGTGGATCTTGTGAAATCACTACTCACCATTACCAAGGATACGGGAAACGAACGAAAGGTGCCCTTTATGAAGTCATTATGGCAGCAGACGGCGCCCATCTTCAGTAGACCGTATTTGATGAAGACTCTACAGCTTTTCTTTCTTCTAGCCGTCTGTACTAGCACTAACAACGTTTTCTACATTTGGTTCCCGACCATTGTCAACTCGTTCTACAACGCGCCGTCAAATGCCACGGCGAGCTTCTGCGATAAAATAACATCGAACATCACTGCGGACGTACATTTAGGGGAAACATGCAATGACGTCATCGCCGACAACACCATATTTTCTGGGATGGCGTTCAGTTTGTTCTTCACAATTATCAACTACATCGCCTCTATGATCACATCGTGGAGGAAGAGCGTACTCGTTGGTACTTTGCTCATATCCGGCATGAGCACTGTCGTGGTGGACCTAGTTGAGCAGCCAGTGATCAGCTTGTTGCTGTTCATACTGATCCAGCTGGTGGGCTTGTCGGCTGGGAACGTCGCGTCCTATTTTGTTGACGTATATCCTACGTCATTCAGAGGTCTTAGCACTAGTCTGGGGTCAATGTTTGCTAGGATGACGGTGATGGTCGGTATCAATATAGTGGACAGTACAATAGTGCAGCACTGTCGAGCCACGTTCTTAAGCTGGTCCATTTTTGTATTTGTGGGAATGGTAGTCGCTTGCTTCCTGCCCAAGGAAACCACCACAACCAGAAACCCATTATTTTACGTGAGTAAAATAGAATCTGTAGGTTTTTGA

Protein

MESELEKVLDIAGHGRYNLMVLLVSSTIHLASILDLLGFCVIVPAAACDLKLGMREISLLTSIPFAGYLSALPWGYYVDTHGRRKAIIISTSVGAVFATLTTFSTSFTMMLVLKLLGCLFSTASITLSITYLGECTGTRNRTRYLLILNCFNLISDFICYALAYLILGLQFEIPLPWLAITFRPWRLLTLVMAVMLAVGGFVIFFLHESPKFLATKGRVDEALEVMKTGYGLKDRDVDLVKSLLTITKDTGNERKVPFMKSLWQQTAPIFSRPYLMKTLQLFFLLAVCTSTNNVFYIWFPTIVNSFYNAPSNATASFCDKITSNITADVHLGETCNDVIADNTIFSGMAFSLFFTIINYIASMITSWRKSVLVGTLLISGMSTVVVDLVEQPVISLLLFILIQLVGLSAGNVASYFVDVYPTSFRGLSTSLGSMFARMTVMVGINIVDSTIVQHCRATFLSWSIFVFVGMVVACFLPKETTTTRNPLFYVSKIESVGF

Uniprot

A0A2H1WUV1   A0A194Q1Q2   A0A194Q1T1   A0A0L7KD47   A0A2W1BWY0   A0A0L7LHZ8   + More
A0A0N1I9N3   A0A0N0PCK2   A0A194Q1T6   A0A2H1WI98   A0A2H1V250   A0A212EY43   A0A194Q2D2   A0A194Q800   A0A2A4JAH3   A0A2W1BUU8   A0A3S2N9S6   A0A212F5C2   A0A0N1IG89   A0A2H1VUC9   H9JVM2   H9JV72   A0A2A4J999   A0A2H1WJU4   A0A2H1W801   A0A0N0PCN2   A0A2W1BGE8   A0A2A4JL38   A0A2A4JLN1   A0A2H1WU82   A0A2A4JKW1   A0A212EY03   H9JVR6   H9JVL1   A0A212EQC0   A0A2H1W7K7   A0A2W1BQE4   A0A194Q1R5   A0A2A4JX40   A0A0N1IPG1   A0A194Q7W0   A0A1A9YHE0   A0A2H1VZK7   A0A2H1WYY1   D3TPI2   A0A212EZN8   A0A1A9UY17   A0A194PJI3   A0A1B0AHB7   A0A2H1V0R1   A0A212FGQ8   A0A1B0AMN9   A0A2W1BVQ5   A0A2A4K5Q7   A0A0A1XKB5   A0A1B0FNM5   A0A0A1XE46   H9JVR7   A0A2H1X0I9   A0A2H1WYT6   A0A194QN61   D6WB98   A0A3S2N7D6   A0A2A4JT62   A0A2H1VVE4   A0A194QN48   A0A194PP30   Q17HA7   Q6U1H2   T1P8E1   A0A034VLH4   A0A1I8PH06   A0A0K8UH50   A0A3S2NIV5   F5HLT0   A0A084W7Z4   A0A182H9I5   A0A182GWL7   A0A1L8DUU9   A0A1L8DEL2   A0A0K8TVF7   W8C469   A0A0A1X5Q6   A0A212EWS0   A0A0A1WGJ9   A0A182V7Y7   A0A182F8Q8   T1GER7   A0A034W0A7   A0A023EUT1   A0A2H1VUK7   A0A182WUB9   A0A182RE84   A0A212EYD8   A0A023ETK8  

Pubmed

26354079    26227816    28756777    22118469    19121390    20353571    + More
25830018    18362917    19820115    17510324    15157223    25315136    25348373    12364791    14747013    17210077    24438588    26483478    24495485    24945155   

EMBL

ODYU01011202    SOQ56787.1    KQ459579    KPI99507.1    KPI99506.1    JTDY01010086    + More
KOB61253.1    KZ149911    PZC78134.1    JTDY01001109    KOB74851.1    KQ460542    KPJ14146.1    KPJ14144.1    KPI99511.1    ODYU01008516    SOQ52184.1    ODYU01000151    SOQ34432.1    AGBW02011638    OWR46364.1    KPI99493.1    KPI99535.1    NWSH01002380    PCG68430.1    PZC78141.1    RSAL01000389    RVE42008.1    AGBW02010212    OWR48924.1    KPJ14129.1    ODYU01004504    SOQ44451.1    BABH01032396    BABH01032397    BABH01032398    BABH01032399    BABH01037389    PCG68429.1    ODYU01009141    SOQ53353.1    ODYU01006861    SOQ49086.1    KPJ14131.1    KZ150202    PZC72277.1    NWSH01001089    PCG72681.1    PCG72686.1    ODYU01011059    SOQ56557.1    PCG72687.1    AGBW02011653    OWR46341.1    BABH01032418    BABH01032419    BABH01032420    BABH01032421    BABH01032422    BABH01032423    BABH01032458    AGBW02013272    OWR43679.1    SOQ49085.1    KZ149979    PZC75844.1    KPI99491.1    NWSH01000457    PCG76268.1    KPJ14127.1    KPI99495.1    ODYU01005122    SOQ45674.1    ODYU01012071    SOQ58176.1    EZ423334    ADD19610.1    AGBW02011241    OWR46942.1    KQ459603    KPI92884.1    SOQ34435.1    AGBW02008612    OWR52914.1    JXJN01000506    PZC75843.1    NWSH01000098    PCG79585.1    GBXI01002836    JAD11456.1    CCAG010023315    GBXI01004603    JAD09689.1    BABH01032426    BABH01032427    BABH01032428    BABH01032429    ODYU01012422    SOQ58716.1    ODYU01012108    SOQ58229.1    KQ461194    KPJ06947.1    KQ971312    EEZ97917.1    RSAL01000258    RVE43385.1    NWSH01000659    PCG74966.1    SOQ44452.1    KPJ06948.1    KPI92885.1    CH477251    EAT46035.1    AY380837    AAQ88394.1    KA644899    AFP59528.1    GAKP01015980    JAC42972.1    GDHF01026325    JAI25989.1    RSAL01000079    RVE48677.1    AAAB01008952    EGK97241.1    ATLV01021326    KE525316    KFB46338.1    JXUM01120885    KQ566440    KXJ70135.1    JXUM01093536    KQ564063    KXJ72850.1    GFDF01003888    JAV10196.1    GFDF01009181    JAV04903.1    GDHF01034056    GDHF01028880    GDHF01023028    GDHF01020845    GDHF01015160    JAI18258.1    JAI23434.1    JAI29286.1    JAI31469.1    JAI37154.1    GAMC01009766    JAB96789.1    GBXI01008289    JAD06003.1    AGBW02011907    OWR45939.1    GBXI01016143    JAC98148.1    CAQQ02083380    CAQQ02083381    GAKP01010823    JAC48129.1    GAPW01000867    JAC12731.1    ODYU01004537    SOQ44529.1    AGBW02011531    OWR46513.1    GAPW01000918    JAC12680.1   

Proteomes

UP000053268    UP000037510    UP000053240    UP000007151    UP000218220    UP000283053    + More
UP000005204    UP000092443    UP000078200    UP000092445    UP000092460    UP000092444    UP000007266    UP000008820    UP000095301    UP000095300    UP000007062    UP000030765    UP000069940    UP000249989    UP000075903    UP000069272    UP000015102    UP000076407    UP000075900   

PRIDE

H9JVM2    H9JV72    H9JVR6    H9JVL1    H9JVR7   

Pfam

PF07690   MFS_1        + More
PF00083   Sugar_tr

Interpro

IPR011701   MFS        + More
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       

SUPFAM

SSF103473   SSF103473       

CDD

cd06174  MFS

ProteinModelPortal

A0A2H1WUV1   A0A194Q1Q2   A0A194Q1T1   A0A0L7KD47   A0A2W1BWY0   A0A0L7LHZ8   + More
A0A0N1I9N3   A0A0N0PCK2   A0A194Q1T6   A0A2H1WI98   A0A2H1V250   A0A212EY43   A0A194Q2D2   A0A194Q800   A0A2A4JAH3   A0A2W1BUU8   A0A3S2N9S6   A0A212F5C2   A0A0N1IG89   A0A2H1VUC9   H9JVM2   H9JV72   A0A2A4J999   A0A2H1WJU4   A0A2H1W801   A0A0N0PCN2   A0A2W1BGE8   A0A2A4JL38   A0A2A4JLN1   A0A2H1WU82   A0A2A4JKW1   A0A212EY03   H9JVR6   H9JVL1   A0A212EQC0   A0A2H1W7K7   A0A2W1BQE4   A0A194Q1R5   A0A2A4JX40   A0A0N1IPG1   A0A194Q7W0   A0A1A9YHE0   A0A2H1VZK7   A0A2H1WYY1   D3TPI2   A0A212EZN8   A0A1A9UY17   A0A194PJI3   A0A1B0AHB7   A0A2H1V0R1   A0A212FGQ8   A0A1B0AMN9   A0A2W1BVQ5   A0A2A4K5Q7   A0A0A1XKB5   A0A1B0FNM5   A0A0A1XE46   H9JVR7   A0A2H1X0I9   A0A2H1WYT6   A0A194QN61   D6WB98   A0A3S2N7D6   A0A2A4JT62   A0A2H1VVE4   A0A194QN48   A0A194PP30   Q17HA7   Q6U1H2   T1P8E1   A0A034VLH4   A0A1I8PH06   A0A0K8UH50   A0A3S2NIV5   F5HLT0   A0A084W7Z4   A0A182H9I5   A0A182GWL7   A0A1L8DUU9   A0A1L8DEL2   A0A0K8TVF7   W8C469   A0A0A1X5Q6   A0A212EWS0   A0A0A1WGJ9   A0A182V7Y7   A0A182F8Q8   T1GER7   A0A034W0A7   A0A023EUT1   A0A2H1VUK7   A0A182WUB9   A0A182RE84   A0A212EYD8   A0A023ETK8  

KEGG

101736269    no KO assigned | (RefSeq) synaptic vesicle glycoprotein 2C-like

GO

GO:0016021   GO:0055085   GO:0022857   GO:0005215   GO:0046982   GO:0006412   GO:0005737   GO:0006520   GO:0006508   GO:0008237   GO:0016020   GO:0003707   GO:0051537  

Length:

498

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

251.78542

Exp number, first 60 AAs:

27.16353

Total prob of N-in:

0.94156

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  55

TMhelix

56  -  78

inside

79  -  84

TMhelix

85  -  107

outside

108  -  110

TMhelix

111  -  133

inside

134  -  144

TMhelix

145  -  167

outside

168  -  186

TMhelix

187  -  206

inside

207  -  280

TMhelix

281  -  303

outside

304  -  343

TMhelix

344  -  363

inside

364  -  369

TMhelix

370  -  389

outside

390  -  392

TMhelix

393  -  415

inside

416  -  421

TMhelix

422  -  444

outside

445  -  458

TMhelix

459  -  476

inside

477  -  498

 

 

Pi

23.877825

Theta

23.551873

Tajima's D

0.179116

CLR

0.867374

CSRT

0.427528623568822

Interpretation

Uncertain