Gene

KWMTBOMO07419

Pre Gene Modal

BGIBMGA010316

Annotation

39S_ribosomal_protein_L4?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr12(-):12494677-12496079      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.173

CDS

ATGGCTTCTATACTAATTAATGCTATAAAAAGGCTACATGTATCTCCTCAAATCCGCTTATGTTCGTTGAATTCAGCCGCCGTTACAACCACTACCGCAAATAAAACTATTAACATTTTAAAAAAGGAATGGGAGTTTCCACCGCTGTACACCAAACCCAGAGAGGTTTGGATCGAGAATTTGGACAGTGTAGAAGAAAAAAAACTCGGCTTAATCGAATTACATCCCATGGTTTATGCGGCTCCACCTAGGATCGACATAATCCACAGCAACGTTATATGGCAAAGAAAATATAGATGGGTTTCCTGGGCACATACCAAGACGAGAGCAGAAGTTCGGGGTGGAGGCAAGAAACCGTGGCCACAGAAAGGGTTGGGTCGCGCCAGACATGGCTCAATAAGATCACCCCTATTTCGTGGTGGAGGTGTAGCCCATGGTCCTCGCTCAGGCAAATCGCACTTCTTTATGCTACCATTTCATCTTAGGCTACATGGCTTAACTACAACACTGTCAGCCAAACTAGCTCAAGATGATCTCCATATTGTTAAAGATTTAGAATTGCCAACAGATGAATCACAGTATTTGGTTGATCTTATTGAAAATAGGAACTGGGGGCCTTCAGTTCTAATTATTGACGACACCGACTATGCACCAAGGAATATTACGGCGGCCACAGATAACTTGTTGCATGTAAACATTATGCCAGTATACGGACTGAATGTATACTCAATGTTAAAACATGACACTCTCGTTTTAACTCAAGCGGCTGCTGAAAAAATTGAAGAGAAACTATTATATCACTTGCACAGTGATAATAGAGAAAGGATGAAGAAATTCAAAATAGATCAAGTTTAG

Protein

MASILINAIKRLHVSPQIRLCSLNSAAVTTTTANKTINILKKEWEFPPLYTKPREVWIENLDSVEEKKLGLIELHPMVYAAPPRIDIIHSNVIWQRKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLIIDDTDYAPRNITAATDNLLHVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEEKLLYHLHSDNRERMKKFKIDQV

Uniprot

Q2F5Y2   H9JLB5   A0A212FLG0   A0A194PU14   A0A2A4K4C4   A0A194QN85   + More
A0A2H1VZR5   A0A0L7KPK2   A0A158NWF2   F4X2X6   A0A195DIE5   A0A151X5H5   A0A195FRX1   A0A151I1D2   A0A151IL46   E2AUE7   D6W6E1   A0A067RH92   A0A0L7RDY6   A0A1W4X9B2   A0A2A3EF57   A0A087ZZ23   A0A1Y1M715   A0A0A9VVN6   A0A0Q9X444   A0A0V0G7Z9   A0A310SRL4   A0A069DS05   E9IKB4   A0A224XL40   A0A023F7M6   A0A2J7R8K1   A0A0T6AWC4   B3MJN4   Q17NG2   B4LTD0   A0A0M9A2X3   A0A1S4EWL5   A0A171BA10   E2B4R1   A0A026WBQ1   A0A182GV41   A0A0K8VCT0   A0A154PCX4   B0W5Q2   A0A1W4VWJ4   D3TQB8   A0A0A1WR31   A0A1J1J7M4   A0A0N7Z8L4   R4FKK0   A0A1A9V1H6   A0A1A9Z621   A0A034VPY1   R4WQM4   A0A1Q3FCD2   Q29NM9   B4GQN6   U4UGW5   A0A1A9YDM8   A0A023EQB5   A0A0A1WRK8   A0A1A9WUF9   A0A1B0BKW6   W8CBY2   A0A084VP12   B4Q705   B4MZQ9   A0A1I8Q9W1   B4NXP0   B4I221   A0A3B0K327   A0A0L0BS36   B4JAB3   A0A336M9T7   A0A2R5LLD5   A0A1I8M314   A0A1L8DRC9   A0A232EJ28   B3N6D4   A0A1L8DRH6   Q9V3D0   A0A2M4ASW9   A0A0M4E633   W5JHE9   A0A2M4BWT0   A0A2M4BWU6   A0A0P4W6F7   A0A182LT47   A0A2M3ZIV8   A0A2M3ZJ34   A0A2S2QXZ5   A0A1S4GWR2   A0A182TWL5   A0A182UP92   A0A0P5Z3X3   A0A293MZV9   A0A0P5QPW3   A0A0C9R0G1   E9GLC0  

Pubmed

19121390    22118469    26354079    26227816    21347285    21719571    + More
20798317    18362917    19820115    24845553    28004739    25401762    26823975    17994087    26334808    21282665    25474469    17510324    24508170    30249741    26483478    20353571    25830018    27129103    25348373    23691247    15632085    23537049    24945155    24495485    24438588    22936249    17550304    26108605    25315136    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    12364791    21292972   

EMBL

DQ311290    ABD36235.2    BABH01037201    AGBW02007778    OWR54567.1    KQ459592    + More
KPI96807.1    NWSH01000162    PCG78917.1    PCG78919.1    KQ461194    KPJ06972.1    ODYU01005458    SOQ46339.1    JTDY01007652    KOB65045.1    ADTU01027929    GL888600    EGI59197.1    KQ980824    KYN12658.1    KQ982498    KYQ55653.1    KQ981280    KYN43355.1    KQ976573    KYM80382.1    KQ977133    KYN05477.1    GL442815    EFN63004.1    KQ971319    EFA11361.1    KK852637    KDR19698.1    KQ414613    KOC69063.1    KZ288269    PBC29912.1    GEZM01041966    JAV80085.1    GBHO01045326    GDHC01011759    JAF98277.1    JAQ06870.1    CH933807    KRG02637.1    GECL01002679    JAP03445.1    KQ759870    OAD62407.1    GBGD01002393    JAC86496.1    GL763957    EFZ18991.1    GFTR01004632    JAW11794.1    GBBI01001341    JAC17371.1    NEVH01006721    PNF37158.1    LJIG01022652    KRT79434.1    CH902620    EDV31373.1    CH477199    EAT48256.1    CH940649    EDW63900.1    KQ435765    KOX75346.1    GEMB01000088    JAS03023.1    GL445584    EFN89342.1    KK107293    QOIP01000005    EZA53393.1    RLU22673.1    JXUM01090248    KQ563827    KXJ73214.1    GDHF01015657    JAI36657.1    KQ434864    KZC09108.1    DS231844    EDS35705.1    EZ423620    ADD19896.1    GBXI01013312    GBXI01007706    JAD00980.1    JAD06586.1    CVRI01000075    CRL08391.1    GDKW01003019    JAI53576.1    ACPB03014224    GAHY01001813    JAA75697.1    GAKP01015080    GAKP01015077    GAKP01015074    JAC43875.1    AK417981    BAN21196.1    GFDL01009866    JAV25179.1    CH379059    EAL34189.1    CH479187    EDW39908.1    KB632191    ERL89826.1    GAPW01002844    JAC10754.1    GBXI01013031    JAD01261.1    JXJN01016076    GAMC01004387    GAMC01004386    JAC02170.1    ATLV01014966    KE524999    KFB39706.1    CM000361    CM002910    EDX05213.1    KMY90504.1    CH963920    EDW77844.1    CM000157    EDW89665.1    CH480820    EDW54578.1    OUUW01000006    SPP82310.1    JRES01001454    KNC22813.1    CH916368    EDW03784.1    UFQS01000758    UFQT01000758    SSX06669.1    SSX27015.1    GGLE01006139    MBY10265.1    GFDF01005046    JAV09038.1    NNAY01004138    OXU18318.1    CH954177    EDV58103.1    GFDF01005045    JAV09039.1    AE014134    AY061407    AAF53526.1    AAL28955.1    GGFK01010511    MBW43832.1    CP012523    ALC37977.1    ADMH02001514    ETN62234.1    GGFJ01008404    MBW57545.1    GGFJ01008405    MBW57546.1    GDRN01079582    JAI62373.1    AXCM01007189    GGFM01007756    MBW28507.1    GGFM01007709    MBW28460.1    GGMS01013405    MBY82608.1    AAAB01008964    GDIP01243978    GDIP01049309    LRGB01000944    JAM54406.1    KZS14581.1    GFWV01020132    MAA44860.1    GDIQ01114054    GDIP01130551    JAL37672.1    JAL73163.1    GBYB01001473    GBYB01001485    JAG71240.1    JAG71252.1    GL732551    EFX79483.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000218220    UP000053240    UP000037510    + More
UP000005205    UP000007755    UP000078492    UP000075809    UP000078541    UP000078540    UP000078542    UP000000311    UP000007266    UP000027135    UP000053825    UP000192223    UP000242457    UP000005203    UP000009192    UP000235965    UP000007801    UP000008820    UP000008792    UP000053105    UP000008237    UP000053097    UP000279307    UP000069940    UP000249989    UP000076502    UP000002320    UP000192221    UP000183832    UP000015103    UP000078200    UP000092445    UP000001819    UP000008744    UP000030742    UP000092443    UP000091820    UP000092460    UP000030765    UP000000304    UP000007798    UP000095300    UP000002282    UP000001292    UP000268350    UP000037069    UP000001070    UP000095301    UP000215335    UP000008711    UP000000803    UP000092553    UP000000673    UP000075883    UP000075902    UP000075903    UP000076858    UP000000305   

PRIDE

Q2F5Y2    H9JLB5    Q9V3D0   

Pfam

PF00573   Ribosomal_L4        + More
PF01926   MMR_HSR1

Interpro

IPR002136   Ribosomal_L4/L1e        + More
IPR023574   Ribosomal_L4_dom_sf       
IPR013005   Ribosomal_uL4/L1e       
IPR030388   G_ERA_dom       
IPR005225   Small_GTP-bd_dom       
IPR006073   GTP_binding_domain       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52166   SSF52166        + More
SSF52540   SSF52540       

Gene 3D

3.40.1370.10    

CDD

cd04163  Era

ProteinModelPortal

Q2F5Y2   H9JLB5   A0A212FLG0   A0A194PU14   A0A2A4K4C4   A0A194QN85   + More
A0A2H1VZR5   A0A0L7KPK2   A0A158NWF2   F4X2X6   A0A195DIE5   A0A151X5H5   A0A195FRX1   A0A151I1D2   A0A151IL46   E2AUE7   D6W6E1   A0A067RH92   A0A0L7RDY6   A0A1W4X9B2   A0A2A3EF57   A0A087ZZ23   A0A1Y1M715   A0A0A9VVN6   A0A0Q9X444   A0A0V0G7Z9   A0A310SRL4   A0A069DS05   E9IKB4   A0A224XL40   A0A023F7M6   A0A2J7R8K1   A0A0T6AWC4   B3MJN4   Q17NG2   B4LTD0   A0A0M9A2X3   A0A1S4EWL5   A0A171BA10   E2B4R1   A0A026WBQ1   A0A182GV41   A0A0K8VCT0   A0A154PCX4   B0W5Q2   A0A1W4VWJ4   D3TQB8   A0A0A1WR31   A0A1J1J7M4   A0A0N7Z8L4   R4FKK0   A0A1A9V1H6   A0A1A9Z621   A0A034VPY1   R4WQM4   A0A1Q3FCD2   Q29NM9   B4GQN6   U4UGW5   A0A1A9YDM8   A0A023EQB5   A0A0A1WRK8   A0A1A9WUF9   A0A1B0BKW6   W8CBY2   A0A084VP12   B4Q705   B4MZQ9   A0A1I8Q9W1   B4NXP0   B4I221   A0A3B0K327   A0A0L0BS36   B4JAB3   A0A336M9T7   A0A2R5LLD5   A0A1I8M314   A0A1L8DRC9   A0A232EJ28   B3N6D4   A0A1L8DRH6   Q9V3D0   A0A2M4ASW9   A0A0M4E633   W5JHE9   A0A2M4BWT0   A0A2M4BWU6   A0A0P4W6F7   A0A182LT47   A0A2M3ZIV8   A0A2M3ZJ34   A0A2S2QXZ5   A0A1S4GWR2   A0A182TWL5   A0A182UP92   A0A0P5Z3X3   A0A293MZV9   A0A0P5QPW3   A0A0C9R0G1   E9GLC0  

PDB

6GB2     E-value=2.86646e-70,     Score=672

KEGG

101746143    K02926 large subunit ribosomal protein L4 | (RefSeq) 39S ribosomal protein L4, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0005525   GO:0005762   GO:0032543   GO:0005737   GO:0006520   GO:0006508   GO:0008237   GO:0016020   GO:0003707   GO:0051537  

PANTHER

PTHR10746  

Length:

284

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07344

Exp number, first 60 AAs:

0.00791

Total prob of N-in:

0.04944

outside

1  -  284

 

 

Pi

33.816315

Theta

24.644607

Tajima's D

1.119095

CLR

0.253464

CSRT

0.700564971751412

Interpretation

Uncertain