Gene

KWMTBOMO07415  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010351

Annotation

PREDICTED:_NADH_dehydrogenase_[ubiquinone]_1_subunit_C2_[Bombyx_mori]

Location

Bomo_Chr12(+):12462040-12463747      View in EpiBrowser

Full name

NADH dehydrogenase [ubiquinone] 1 subunit C2      

Location in the cell

Cytoplasmic   Reliability : 1.269 Mitochondrial   Reliability : 1.885

CDS

ATGTCGCTGCATATGTCTGCCCAAGAACTCCTAAAATTAGGAGATGAAGGACGACAAAAACCTTTTCTGAACAAATATTGGCCTGAAATAATAGGAGTTACGTTCGGTATTGGCACAGGAATGTTTCTAAACTTCCAGACTAAACGGCCAGTGTTCAGCGGTATCCAAAAACATATAATTGCAACTGGAGGTTGGGTCAGCATTTTAAGTTATGTACAGCATAAACGGAATGAATATTTAGCAGAAAAGGATGCAGTATACAGGCATTATATAGAATTACACCCAGATGATTTCCCTGTTCCCGAACGTAAGAAGATTGGTGACTTGTTTGAACCTTGGATCCCAGTTCGTTAA

Protein

MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR

Description

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Similarity

Belongs to the complex I NDUFC2 subunit family.

Uniprot

H9JLF0   A0A194QN68   I4DKC9   A0A194PUY6   S4NWY8   A0A0L7LFM4   + More
A0A212FLJ7   A0A2H1W081   A0A2A4K4U1   A0A0M3QTA5   A0A034WRS1   A0A0A1WJU7   A0A1L8E192   A0A1W4UTN9   B4MZB2   B3NAR2   A0A0K8WKW3   B4I2W1   B4Q938   Q9VQM2   A0A1B0CR45   B4JAN4   B4NXE1   W8C6B2   B3N201   V5GC13   A0A1B6DXD0   A0A1Q3FJZ5   A0A0T6B269   A0A3B0JIZ0   A0A023EF40   B4LU29   U5EFI4   A0A182VYP5   Q29L28   B4GSG2   B0WA11   A0A1A9WXQ4   A0A182MRT2   D2A2K1   A0A1Y1MJW8   A0A182SHI8   A0A1Y1MJY3   A0A182XW89   Q178D3   A0A182RP24   R4WTL5   A0A1B0AYY5   A0A0K8TTF5   U4UJU1   A0A182K0S6   A0A1A9V829   N6TXN7   A0A1B0A4E0   A0A182P7R6   T1GTF6   A0A084VT43   A0A1J1HN34   A0A182N710   A0A0L0CFW7   A0A182IVQ2   A0A0A9WHA6   A0A182F977   A0A182V5K6   A0A182UAY2   A0A182LG97   A0A182XHJ6   Q7QD00   A0A182HTU7   A0A2M4C3Y0   T1E7M9   W5JRX8   A0A1B0FAB0   A0A2M4ACS9   A0A1I8N511   A0A2P8YVN3   A0A2M3Z3V2   A0A1I8P3R5   A0A336L1X5   A0A182QKW3   A0A067RFC4   A0A2S2QKE7   A0A1W4XC11   B4KEV1   A0A2H8TQT7   A0A1L8EEU8   A0A1A9XEI2   A0A224Y0K0   C4WSG2   J9KA50   A0A1B6FQZ5   A0A2S2PUN6   B7P949   A0A161N1C1   A0A0V0G4I3   A0A1B6IU48   A0A182HA83   A0A0P4VMY5   R4G4B1   A0A131Z509  

Pubmed

19121390    26354079    22651552    23622113    26227816    22118469    + More
25348373    25830018    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24495485    24945155    15632085    18362917    19820115    28004739    25244985    17510324    23691247    26369729    23537049    24438588    26108605    25401762    20966253    12364791    14747013    17210077    20920257    23761445    25315136    29403074    24845553    26483478    27129103    26830274   

EMBL

BABH01037199    BABH01037200    KQ461194    KPJ06968.1    AK401747    BAM18369.1    + More
KQ459592    KPI96803.1    GAIX01012367    JAA80193.1    JTDY01001329    KOB74180.1    AGBW02007778    OWR54570.1    ODYU01005458    SOQ46336.1    NWSH01000162    PCG78928.1    CP012523    ALC38573.1    GAKP01001618    JAC57334.1    GBXI01015609    JAC98682.1    GFDF01001650    JAV12434.1    CH963913    EDW77385.1    CH954177    EDV57585.1    GDHF01000521    JAI51793.1    CH480820    EDW54106.1    CM000361    CM002910    EDX03577.1    KMY87824.1    AE014134    AY119127    KX532036    AAF51143.1    AAM50987.1    ANY27846.1    AJWK01024389    CH916368    EDW03842.1    CM000157    EDW87498.1    GAMC01001217    JAC05339.1    CH902667    EDV30611.1    GALX01000771    JAB67695.1    GEDC01006973    JAS30325.1    GFDL01007223    JAV27822.1    LJIG01016327    KRT80935.1    OUUW01000006    SPP82195.1    GAPW01006219    JAC07379.1    CH940649    EDW65082.1    GANO01003834    JAB56037.1    CH379061    EAL32996.2    CH479189    EDW25321.1    DS231868    EDS40744.1    AXCM01005921    KQ971338    EFA02843.1    GEZM01029622    GEZM01029621    GEZM01029619    JAV86039.1    GEZM01029620    JAV86042.1    CH477366    EAT42520.1    AK418032    BAN21247.1    JXJN01006028    GDAI01000162    JAI17441.1    KB632354    ERL93367.1    APGK01057291    KB741279    ENN71052.1    CAQQ02067388    ATLV01016167    KE525060    KFB41137.1    CVRI01000012    CRK89461.1    JRES01000438    KNC31308.1    GBHO01036813    GBRD01016461    JAG06791.1    JAG49365.1    AAAB01008859    EAA08018.3    APCN01000586    GGFJ01010872    MBW60013.1    GAMD01002892    JAA98698.1    ADMH02000272    ETN67162.1    CCAG010012870    GGFK01005239    MBW38560.1    PYGN01000334    PSN48308.1    GGFM01002448    MBW23199.1    UFQS01001498    UFQT01001020    UFQT01001498    SSX11256.1    SSX28514.1    AXCN02000322    KK852669    KDR18848.1    GGMS01009013    MBY78216.1    CH933807    EDW13001.1    GFXV01003813    GFXV01007661    MBW15618.1    MBW19466.1    GFDG01001615    JAV17184.1    GFTR01001926    JAW14500.1    AK340177    BAH70832.1    ABLF02030293    GECZ01017336    JAS52433.1    GGMR01020476    MBY33095.1    ABJB010973418    DS661587    EEC03121.1    GEMB01002299    JAS00882.1    GECL01003177    JAP02947.1    GECU01017249    JAS90457.1    JXUM01030861    JXUM01030862    JXUM01030863    KQ560899    KXJ80425.1    GDKW01000652    JAI55943.1    ACPB03003284    GAHY01000921    JAA76589.1    GEDV01002712    JAP85845.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007151    UP000218220    + More
UP000092553    UP000192221    UP000007798    UP000008711    UP000001292    UP000000304    UP000000803    UP000092461    UP000001070    UP000002282    UP000007801    UP000268350    UP000008792    UP000075920    UP000001819    UP000008744    UP000002320    UP000091820    UP000075883    UP000007266    UP000075901    UP000076408    UP000008820    UP000075900    UP000092460    UP000030742    UP000075881    UP000078200    UP000019118    UP000092445    UP000075885    UP000015102    UP000030765    UP000183832    UP000075884    UP000037069    UP000075880    UP000069272    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000000673    UP000092444    UP000095301    UP000245037    UP000095300    UP000075886    UP000027135    UP000192223    UP000009192    UP000092443    UP000007819    UP000001555    UP000069940    UP000249989    UP000015103   

PRIDE

H9JLF0    Q9VQM2   

Pfam

PF06374   NDUF_C2

Interpro

IPR009423   NADH-UbQ_OxRdtase_b14.5b_su       

ProteinModelPortal

H9JLF0   A0A194QN68   I4DKC9   A0A194PUY6   S4NWY8   A0A0L7LFM4   + More
A0A212FLJ7   A0A2H1W081   A0A2A4K4U1   A0A0M3QTA5   A0A034WRS1   A0A0A1WJU7   A0A1L8E192   A0A1W4UTN9   B4MZB2   B3NAR2   A0A0K8WKW3   B4I2W1   B4Q938   Q9VQM2   A0A1B0CR45   B4JAN4   B4NXE1   W8C6B2   B3N201   V5GC13   A0A1B6DXD0   A0A1Q3FJZ5   A0A0T6B269   A0A3B0JIZ0   A0A023EF40   B4LU29   U5EFI4   A0A182VYP5   Q29L28   B4GSG2   B0WA11   A0A1A9WXQ4   A0A182MRT2   D2A2K1   A0A1Y1MJW8   A0A182SHI8   A0A1Y1MJY3   A0A182XW89   Q178D3   A0A182RP24   R4WTL5   A0A1B0AYY5   A0A0K8TTF5   U4UJU1   A0A182K0S6   A0A1A9V829   N6TXN7   A0A1B0A4E0   A0A182P7R6   T1GTF6   A0A084VT43   A0A1J1HN34   A0A182N710   A0A0L0CFW7   A0A182IVQ2   A0A0A9WHA6   A0A182F977   A0A182V5K6   A0A182UAY2   A0A182LG97   A0A182XHJ6   Q7QD00   A0A182HTU7   A0A2M4C3Y0   T1E7M9   W5JRX8   A0A1B0FAB0   A0A2M4ACS9   A0A1I8N511   A0A2P8YVN3   A0A2M3Z3V2   A0A1I8P3R5   A0A336L1X5   A0A182QKW3   A0A067RFC4   A0A2S2QKE7   A0A1W4XC11   B4KEV1   A0A2H8TQT7   A0A1L8EEU8   A0A1A9XEI2   A0A224Y0K0   C4WSG2   J9KA50   A0A1B6FQZ5   A0A2S2PUN6   B7P949   A0A161N1C1   A0A0V0G4I3   A0A1B6IU48   A0A182HA83   A0A0P4VMY5   R4G4B1   A0A131Z509  

PDB

6G72     E-value=1.02899e-06,     Score=119

KEGG

101745713    K03968 NADH dehydrogenase (ubiquinone) 1 subunit C2 | (RefSeq) NADH dehydrogenase [ubiquinone] 1 sub

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0008137   GO:0070469   GO:0006120   GO:0005743   GO:0016021   GO:0005747   GO:0003954   GO:0016020   GO:0022891   GO:0004714   GO:0007169   GO:0003707   GO:0051537  

PANTHER

PTHR13099  

Subcellular location

Mitochondrion inner membrane  

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.26198

Exp number, first 60 AAs:

13.11341

Total prob of N-in:

0.17308

POSSIBLE N-term signal

sequence

outside

1  -  117

 

 

Pi

36.847592

Theta

29.738926

Tajima's D

0.628524

CLR

0.266218

CSRT

0.55657217139143

Interpretation

Uncertain