Gene

KWMTBOMO07414

Pre Gene Modal

BGIBMGA010318

Annotation

PREDICTED:_rRNA-processing_protein_FCF1_homolog_[Amyelois_transitella]

Location

Bomo_Chr12(-):12457209-12458039      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.685

CDS

ATGGGCAAACAACGAAAAACGAGGAAAATAGTAGAGAAAAGATTTGCAAAAATGAAAAAAATGATCAACCCCAGCGACTCTCGGATAAAAAATAGCGAAAGGAGTGAACCAAAGAAGAAGAAACCTGTAGATCCTCATGTAATTAAAATACGTGAAGTCCCACAAACAAGTTCCGCACTATTCTTCCAATACAACATGCAGCTAGGACCGCCATATCATGTACTAATTGACACAAACTTCATCAACTTCTCAATAAAGAACAAACTTGATATCATACAAAATATGATGGATTGTCTTTATGCTAAATGCATACCATATATTACTGATTGTGTCCTTGGAGAATTGGAAAAACTTGGAAGAAAGTATAGAGTAGCTTTAAGGATTATCAAGGACCCACGATTTGAGAGGATAGCATGTCTTCACAAAGGTACATATGCTGATGATTGTTTAGTACAAAGAGTTACACAACATAAATGTTATATTGTAGCTACAAATGACAAAGATTTGAAACGAAGAATTAGAAAAATACCAGGTGTGCCTATAATGTATGTTGCGGAACACAAGTATACAATAGAACGAATGCCGGATGCATATGGTGCTCCAAAAGGAGCAATTTAA

Protein

MGKQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSALFFQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEKLGRKYRVALRIIKDPRFERIACLHKGTYADDCLVQRVTQHKCYIVATNDKDLKRRIRKIPGVPIMYVAEHKYTIERMPDAYGAPKGAI

Uniprot

A0A1E1WUD5   A0A0L7LG74   A0A194QN80   S4P848   H9JLB7   A0A3S2LGF6   + More
A0A2H1VZQ8   A0A2A4K3U3   A0A139WK13   A0A1Y1N417   J3JXI9   A0A194PU09   V5GYI6   A0A1W4X1H8   A0A212EU41   A0A067RAR6   A0A1B6E8L5   A0A1B6JGF8   A0A1B6FQ23   A0A0M9A203   A0A088A7Y9   A0A2A3ENV7   A0A026WHV9   A0A158NRY5   A0A195ESJ7   A0A1B6KQ35   A0A151X3F8   T1IWV5   E9IY58   A0A1D2N174   A0A195D871   A0A154PM16   A0A195BRK1   A0A0L7RB73   A0A0A1WWY1   A0A2J7R4Y0   E1ZWJ6   A0A034WNA2   A0A0J7L3H0   K7ILV3   A0A0K8W4F2   E2C5B7   A0A2H8TJM9   A0A2S2NZ54   J9JK19   R7U5A4   A0A1B6I6V6   C4WV25   A0A3Q7NVG5   A0A2S2QTK5   A0A1A9WUI7   A0A0Q3MM02   A0A0P5HW21   A0A0P5KZ33   A0A0P5HVZ4   A0A0P6GKF3   A0A0P6EIZ1   A0A0N8BT64   A0A0P5FE84   A0A0P4VRM2   R4G5P7   A0A3L8SWX3   A0A0P5UTS4   A0A0P5DF56   E9FSH6   A0A0P5X999   A0A164TW27   A0A1V4KFK8   A0A0P5Y6V9   A0A1A8BDE2   A0A1A8V4E2   T1I324   M7B0Y7   A0A1W4W9P9   A0A226EMW6   A0A1L8DHV2   A0A0P4XJA2   A0A1A8HWX7   B4LRC6   U3I495   G1NJ95   V5HW16   K7GFG3   A0A182JLX5   W8C362   A0A1L1RUD3   D3PIU5   A0A0P5BDJ0   U3FZI1   A0A3B1KFP6   A0A3P8UCS7   T1DIY1   J3SEE2   E3TCB7   Q9VL75   U5EVR8   B3N8J3   A0A287DAL1   A0A1U7TPR5   A0A2K5RK03  

Pubmed

26227816    26354079    23622113    19121390    18362917    19820115    + More
28004739    22516182    23537049    22118469    24845553    24508170    30249741    21347285    21282665    27289101    25830018    20798317    25348373    20075255    23254933    27129103    30282656    21292972    23624526    17994087    23749191    20838655    25765539    17381049    24495485    15592404    23915248    25329095    24487278    23758969    23025625    20634964    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

GDQN01000401    JAT90653.1    JTDY01001329    KOB74186.1    KOB74187.1    KQ461194    + More
KPJ06967.1    GAIX01006101    JAA86459.1    BABH01037198    RSAL01000139    RVE46144.1    ODYU01005458    SOQ46335.1    NWSH01000162    PCG78927.1    KQ971338    KYB28157.1    GEZM01014266    JAV92158.1    APGK01010787    BT127958    KB738301    KB632179    AEE62920.1    ENN82674.1    ERL89608.1    KQ459592    KPI96802.1    GALX01001554    JAB66912.1    AGBW02012509    OWR44964.1    KK852777    KDR16779.1    GEDC01003029    JAS34269.1    GECU01009504    JAS98202.1    GECZ01017515    JAS52254.1    KQ435793    KOX74189.1    KZ288203    PBC33407.1    KK107198    QOIP01000007    EZA55622.1    RLU20096.1    ADTU01024310    KQ981993    KYN30882.1    GEBQ01026424    JAT13553.1    KQ982562    KYQ54943.1    JH431631    GL766908    EFZ14473.1    LJIJ01000306    ODM98980.1    KQ981153    KYN09071.1    KQ434977    KZC12892.1    KQ976424    KYM88571.1    KQ414617    KOC68172.1    GBXI01011369    JAD02923.1    NEVH01007399    PNF35885.1    GL434853    EFN74433.1    GAKP01002819    GAKP01002818    JAC56134.1    LBMM01000928    KMQ97201.1    GDHF01006216    JAI46098.1    GL452770    EFN76850.1    GFXV01002077    MBW13882.1    GGMR01009785    MBY22404.1    ABLF02015427    AMQN01001779    KB305378    ELU01159.1    GECU01025040    JAS82666.1    AK341327    BAH71745.1    GGMS01011855    MBY81058.1    LMAW01001447    KQK83559.1    GDIQ01227020    JAK24705.1    GDIQ01177280    JAK74445.1    GDIQ01222120    JAK29605.1    GDIQ01033382    JAN61355.1    GDIQ01063273    JAN31464.1    GDIQ01147347    JAL04379.1    GDIQ01256778    JAJ94946.1    GDKW01001375    JAI55220.1    GAHY01000345    JAA77165.1    QUSF01000004    RLW10253.1    GDIP01110306    JAL93408.1    GDIP01158394    JAJ65008.1    GL732524    EFX89829.1    GDIP01075469    JAM28246.1    LRGB01001697    KZS10811.1    LSYS01003385    OPJ83222.1    GDIP01063413    JAM40302.1    HADZ01000564    HAEA01014016    SBP64505.1    HADY01021267    HAEJ01013990    SBS54447.1    ACPB03003283    KB548684    EMP30709.1    LNIX01000002    OXA59025.1    GFDF01008035    JAV06049.1    GDIP01241816    JAI81585.1    HAED01003924    HAEE01013195    SBQ89942.1    CH940649    EDW64596.1    ADON01084901    ADON01084902    GANP01001659    JAB82809.1    AGCU01050062    GAMC01000168    JAC06388.1    AADN05000303    BT121551    ADD38481.1    GDIP01186349    JAJ37053.1    GAEP01000596    GBEW01000908    JAB54225.1    JAI09457.1    GAAZ01002208    JAA95735.1    JU174565    GBEX01003000    AFJ50091.1    JAI11560.1    GU587996    ADO27953.1    AE014134    AY071065    AY113414    AAF52821.2    AAL48687.1    AAM29419.1    GANO01000893    JAB58978.1    CH954177    EDV58416.1    AGTP01020516   

Proteomes

UP000037510    UP000053240    UP000005204    UP000283053    UP000218220    UP000007266    + More
UP000019118    UP000030742    UP000053268    UP000192223    UP000007151    UP000027135    UP000053105    UP000005203    UP000242457    UP000053097    UP000279307    UP000005205    UP000078541    UP000075809    UP000094527    UP000078492    UP000076502    UP000078540    UP000053825    UP000235965    UP000000311    UP000036403    UP000002358    UP000008237    UP000007819    UP000014760    UP000286641    UP000091820    UP000051836    UP000276834    UP000000305    UP000076858    UP000190648    UP000015103    UP000031443    UP000192221    UP000198287    UP000008792    UP000016666    UP000001645    UP000007267    UP000075880    UP000000539    UP000018467    UP000265120    UP000000803    UP000008711    UP000005215    UP000189704    UP000233040   

PRIDE

H9JLB7    Q9VL75   

Pfam

PF04900   Fcf1

Interpro

IPR006984   Fcf1/Utp23        + More
IPR037503   Fcf1_PIN       
IPR002716   PIN_dom       
IPR029060   PIN-like_dom_sf       

SUPFAM

SSF88723   SSF88723       

CDD

cd09864  PIN_Fcf1

ProteinModelPortal

A0A1E1WUD5   A0A0L7LG74   A0A194QN80   S4P848   H9JLB7   A0A3S2LGF6   + More
A0A2H1VZQ8   A0A2A4K3U3   A0A139WK13   A0A1Y1N417   J3JXI9   A0A194PU09   V5GYI6   A0A1W4X1H8   A0A212EU41   A0A067RAR6   A0A1B6E8L5   A0A1B6JGF8   A0A1B6FQ23   A0A0M9A203   A0A088A7Y9   A0A2A3ENV7   A0A026WHV9   A0A158NRY5   A0A195ESJ7   A0A1B6KQ35   A0A151X3F8   T1IWV5   E9IY58   A0A1D2N174   A0A195D871   A0A154PM16   A0A195BRK1   A0A0L7RB73   A0A0A1WWY1   A0A2J7R4Y0   E1ZWJ6   A0A034WNA2   A0A0J7L3H0   K7ILV3   A0A0K8W4F2   E2C5B7   A0A2H8TJM9   A0A2S2NZ54   J9JK19   R7U5A4   A0A1B6I6V6   C4WV25   A0A3Q7NVG5   A0A2S2QTK5   A0A1A9WUI7   A0A0Q3MM02   A0A0P5HW21   A0A0P5KZ33   A0A0P5HVZ4   A0A0P6GKF3   A0A0P6EIZ1   A0A0N8BT64   A0A0P5FE84   A0A0P4VRM2   R4G5P7   A0A3L8SWX3   A0A0P5UTS4   A0A0P5DF56   E9FSH6   A0A0P5X999   A0A164TW27   A0A1V4KFK8   A0A0P5Y6V9   A0A1A8BDE2   A0A1A8V4E2   T1I324   M7B0Y7   A0A1W4W9P9   A0A226EMW6   A0A1L8DHV2   A0A0P4XJA2   A0A1A8HWX7   B4LRC6   U3I495   G1NJ95   V5HW16   K7GFG3   A0A182JLX5   W8C362   A0A1L1RUD3   D3PIU5   A0A0P5BDJ0   U3FZI1   A0A3B1KFP6   A0A3P8UCS7   T1DIY1   J3SEE2   E3TCB7   Q9VL75   U5EVR8   B3N8J3   A0A287DAL1   A0A1U7TPR5   A0A2K5RK03  

PDB

5WYK     E-value=4.79122e-60,     Score=582

KEGG

101745565    K14566 U3 small nucleolar RNA-associated protein 24 | (RefSeq) rRNA-processing protein FCF1 homolog

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040   GO:0016021   GO:0005730   GO:0000447   GO:0000480   GO:0045892   GO:0005215   GO:0016020   GO:0022891   GO:0004714   GO:0007169   GO:0003707   GO:0051537  

Length:

205

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04022

Exp number, first 60 AAs:

0.00321

Total prob of N-in:

0.56959

inside

1  -  205

 

 

Pi

32.710006

Theta

37.8014

Tajima's D

-0.243536

CLR

0.382041

CSRT

0.304134793260337

Interpretation

Uncertain