Silkworm Genome Informatics Database

Gene

KWMTBOMO07409

Pre Gene Modal

BGIBMGA010320

Annotation

PREDICTED:_cuticular_protein_RR-2_motif_140_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr12(-):12380760-12383839 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.849

CDS

ATGATTTTATCAACTTTCTTTATTAGTATATTGGCTTGGTCAGCAATCCGTTGTGAACCACCAGTAAACAGTTACCTACCTCCTTCAAATAGTGCAAACGGAAGGCCTTCATCTCAGTATGGTCCTCCCGGTTCAGGAGGTGCTCCTGGACATAATCAACAAGGTTCAGGAGCTCAATTTAGTCCCAGTAACCAACCCCAGAGCTCTTATCTGCCTCCTAGTCGTTCTGGTCAATCCAGTGTAGACACACAATATGGCCCACCTTCTTCCGGAGGCTTTGGTTCGGGGTCATCTTCTCAAGGCCAACAACTACGCCAGGGTTCCGGACAAGCAAAGCCAGACTCACAATATGGAACTCCAAATCAAAATGGAAGATTCTCTTCGGGATTGACCGGTGGACATTCCCAACCTGGTGCCAGTAGTAATAGTCATCCGACAAGCAATTCTCAGGGCAGACAATCTTTTGGAAATGGCGGATCTTCTAATGGCGGTAGCTTTGGACCAGATAATCAGAGTTTTGATCAGAAGCCTGGTAGTTCTTATAATCCTTCTACTGCTGGATTTCGGTCTTCCAATTCGGATTCAAATTCTAATGGAAACTTCGGTAGTCATGCCGGTGGAGCTCGTTTGACCGATGGTTCTCAGAGTAGTTTTAGTGGAACACCATCCTCTTCGTATGGAACGCCTGGATTCGGAGGTAACGGTGCTAGTCATGGTAATGGCGGCGGCAGTGGTTCAGGTTTTGGAGGAGGAAATGGAGGTTTTGGAGGAGATGACAATAATGAACCAGCAAAATACCAGTTTAGTTATGACGTGGACGATGAACAGACAGGTACTAAATTTGGTCATTCAGAACAGCGAGATGGCGATCTCGCCACTGGGGAGTATAACGTAGTGTTGCCAGATGGCAGGAAGCAGGTTGTTGAGTACGAGGCTGGCCTGGAAGGATACAAGCCTCAGATTCGATATGAGGGTACTGGAAATGGGGGGTCAAGGCAAGGATCTGGATCGGGTGGTTTCGGGGAATCGCAAAGATTGAGTCAAGGATACACTGAAAATGGTCCCAATGAAGGAGGTTTTCAGAGCAACAACGTTGATAGTTTTGGAGGATCAGGAGAACAGACATTTGGTCAATTCCGAGGCTCTAATGCTCAAGCCGGTAATGGATATCCCAGTGGTGGACAGAATGGCCAAAATCAAGGATACCCAAATGGAGGTTCCGGACAAAACGGGAATCAAGGTTTTTCATCGGGTAATAACGGCGCAAATAGACTTAATGGAGGAAGCCAGGGCTATCCAAGTGGCGGACCACGAGGAAATGGTCGAGGGTCTGCCGCTGACCCAGGTAACTTTTCTAATGCCAGCGGAAGAGGAAGCTCTCGAAACTCAGGTGGTACTTCTGGAAGTGATGGTTACCCAAGTGGTGGACCTAATGGGCTTAGAGGCTCTGGATATTAA

Protein

MILSTFFISILAWSAIRCEPPVNSYLPPSNSANGRPSSQYGPPGSGGAPGHNQQGSGAQFSPSNQPQSSYLPPSRSGQSSVDTQYGPPSSGGFGSGSSSQGQQLRQGSGQAKPDSQYGTPNQNGRFSSGLTGGHSQPGASSNSHPTSNSQGRQSFGNGGSSNGGSFGPDNQSFDQKPGSSYNPSTAGFRSSNSDSNSNGNFGSHAGGARLTDGSQSSFSGTPSSSYGTPGFGGNGASHGNGGGSGSGFGGGNGGFGGDDNNEPAKYQFSYDVDDEQTGTKFGHSEQRDGDLATGEYNVVLPDGRKQVVEYEAGLEGYKPQIRYEGTGNGGSRQGSGSGGFGESQRLSQGYTENGPNEGGFQSNNVDSFGGSGEQTFGQFRGSNAQAGNGYPSGGQNGQNQGYPNGGSGQNGNQGFSSGNNGANRLNGGSQGYPSGGPRGNGRGSAADPGNFSNASGRGSSRNSGGTSGSDGYPSGGPNGLRGSGY

Uniprot

C0H6Y2

Pubmed

19121390 19280704

EMBL

BABH01037192 BR000641 FAA00643.1

Proteomes

UP000005204

PRIDE

C0H6Y2

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

C0H6Y2

KEGG

100379338 no KO assigned | (RefSeq) CPR140, BmorCPR140; cuticular protein RR-2 motif 140

GO

GO:0042302 GO:0008270 GO:0006468 GO:0004672 GO:0005524 GO:0004714 GO:0007169 GO:0016020 GO:0003707 GO:0051537

SignalP

Position: 1 - 18, Likelihood: 0.976277

Length:

485

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00485

Exp number, first 60 AAs:

0.00485

Total prob of N-in:

0.00074

outside

1 - 485

Pi

29.730352

Theta

22.78352

Tajima's D

0.871593

CLR

0.483263

CSRT

0.632268386580671

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree