Gene

KWMTBOMO07406

Pre Gene Modal

BGIBMGA010344

Annotation

PREDICTED:_beta-1-syntrophin_[Amyelois_transitella]

Location

Bomo_Chr12(+):12109455-12116022      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.193

CDS

ATGGTGGAAAACGGTGCCTCGAGTGGTGGCAGTGATAGTCCTAGTGCAACATGTGTTCGTTCTGGTCTTCTAGAGACGTTAGTCCGTGGTGTTTGGTATCGCGTTCATTGTTCATTAGAAGACGATTACCTGAGCGTCTGTCTCGATGATGGGTATGATGCGACAACGACTTTGAATGGCACTCTGAACAACAACAACGTCGAAACTCCGAACAGCGACTTCGCAGAGGTACCCGAAGCAATTGCAAACCAAAAACGTTTAGTACAAGTTGTGAAATCGGACAACAACGGGCTTGGTATATCAATAAAAGGTGGAATCGAAAATAACATGCCAATATTGATATCAAAAATATTCAAGGGTATGGCAGCCGACTTGACTGAACAGTTGTACGTTGGTGATGCTATATTGTCTGTAAACGGTGAGGATCTCAAAGATGCGACACACGAAGAAGCTGTAAAGGCATTGAAGAGAGCTGGAAAAATGGTACAACTGGAAGTGAAATATCTCCGTGAAGTGACACCGTACTTCCGTAAGGCATCCATTATAAGTGAAGTAGGATGGGAGCTACAACGTGGGTATATGGCAGACACACCACCGTCGCCACCATCTCCACGCCGTCGACGGGCAGACACTCGTTATGTACCACTGTTAATGGCATGCGTTGCCAAGAATCTCCGTCATAATGACCCAGAGGATCGCACAATCGAAATATATTCACCGGACGGCGTCCACGCATTAGCATTACGGGCCAGTTCAGCGGCCACAGCGTCAGGGTGGCATCGCGCGCTACATGCAGCCGCACGTCGGGCTGCACGCGCCGCTCTTGCTCGCGCCAGGCCGAGACTTCGCCCTCTTGTAGGCGATGTGCGATATGCTGGTTGGATGGCAAGGCGCCCACCGCAAGATCATATGAGCGCTTCAGGAGGGTCTGACAGCTCCGACGAGACTGAAGGCTGGCAGCCAACATTCGTTGCAATCACAGACAGAGAGTTAAGGCTGTATGAGGCGGCGCCGTGGTCGGCGGAGGCATGGTGCGCGCCGGCGGAGAGCCTGCGGCTGGCGGCGACGCGGCTGGCCTGGTGGCGGCGAGCTGGGGCGGGCGGGGCGGCGGCGCTGGGGCTGCGGGCCGGGTGCGTGGACGGGCTGGTGCAGCGAGCCCTGCGCGCGGACTCGCCGCACGACCTGGCGGCCGCCGCGTCCGCGCTGGTGGAGGGGGCGCACGCGGCGGTGCGAGCGCAGCCCGAGTTCACGTTCCGCTGCTCGGTGGGCGGGGCGGCGGCGCGGCTGGCGCTGGGGGCGGCGGGCGTGTGCGTGTGGGAGGCGGCGGGCTCGCTGGGCCGCGCGCTGTACCGCCGCCCGCTGCACGCACTCCGCGCTTCCGCTGACGACGACAACAACAAGCTCTGGCTGCACTTCGCTGACGACGACACGTTGGAGCTAGAAATGGACGGTAGCCCGAAGCCGGCTGTGTTCATTCTGCACAATTTGCTGTCGGCTCGCGTCCACTCGCTGCCGGGAGATCCGACACCGAACCCGCTATAA

Protein

MVENGASSGGSDSPSATCVRSGLLETLVRGVWYRVHCSLEDDYLSVCLDDGYDATTTLNGTLNNNNVETPNSDFAEVPEAIANQKRLVQVVKSDNNGLGISIKGGIENNMPILISKIFKGMAADLTEQLYVGDAILSVNGEDLKDATHEEAVKALKRAGKMVQLEVKYLREVTPYFRKASIISEVGWELQRGYMADTPPSPPSPRRRRADTRYVPLLMACVAKNLRHNDPEDRTIEIYSPDGVHALALRASSAATASGWHRALHAAARRAARAALARARPRLRPLVGDVRYAGWMARRPPQDHMSASGGSDSSDETEGWQPTFVAITDRELRLYEAAPWSAEAWCAPAESLRLAATRLAWWRRAGAGGAAALGLRAGCVDGLVQRALRADSPHDLAAAASALVEGAHAAVRAQPEFTFRCSVGGAAARLALGAAGVCVWEAAGSLGRALYRRPLHALRASADDDNNKLWLHFADDDTLELEMDGSPKPAVFILHNLLSARVHSLPGDPTPNPL

Uniprot

H9JLE3   A0A212FLF6   A0A194Q051   A0A1B6JYL0   A0A1B6HJZ0   A0A1W4X6E1   + More
A0A067R5A8   A0A0A9YGU7   A0A0V0G9Q3   A0A069DVA4   A0A023F4T2   T1HGP8   A0A1L8E3G4   A0A1L8E3S9   A0A3L8DK71   A0A0C9QT18   A0A2C9GQ69   K7IM22   A0A2M4CU94   Q7Q0A5   A0A084VI78   A0A1I8MAX9   A0A1I8MAY1   A0A1I8P747   A0A0A1WDQ1   A0A0K8V152   W8BKF2   A0A0C9R7Q3   B4LD77   A0A0M5IZA3   A0A0C9RNZ2   B4IYV9   A0A0R1E820   B4KUV6   B3MAT0   A0A0R1DYX2   B4QKM6   M9PGE3   Q9VNY4   B4IAV6   B3NIZ4   A0A0P9C2N2   B4PD37   A0A0J9UR75   Q9VNY2   A0A0Q5UKK4   A0A1W4URP9   A0A0J9RZQ8   A0A1W4URF7   A0A3B0JYI0   B4GRV4   Q2M0B5   A0A1D2MWG6  

Pubmed

19121390    22118469    26354079    24845553    25401762    26823975    + More
26334808    25474469    30249741    20075255    12364791    24438588    25315136    25830018    24495485    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    26109357    26109356    18057021    15632085    27289101   

EMBL

BABH01037166    AGBW02007778    OWR54571.1    KQ459592    KPI96795.1    GECU01003410    + More
JAT04297.1    GECU01032719    JAS74987.1    KK852879    KDR14467.1    GBHO01011317    GDHC01019469    JAG32287.1    JAP99159.1    GECL01001355    JAP04769.1    GBGD01001257    JAC87632.1    GBBI01002723    JAC15989.1    ACPB03006856    GFDF01000816    JAV13268.1    GFDF01000815    JAV13269.1    QOIP01000007    RLU20807.1    GBYB01006879    JAG76646.1    APCN01003298    APCN01003299    GGFL01004573    MBW68751.1    AAAB01008986    EAA00191.4    ATLV01013325    ATLV01013326    ATLV01013327    ATLV01013328    ATLV01013329    KE524853    KFB37672.1    GBXI01017163    JAC97128.1    GDHF01019657    JAI32657.1    GAMC01004755    JAC01801.1    GBYB01008862    JAG78629.1    CH940647    EDW70984.1    CP012525    ALC45236.1    GBYB01008861    JAG78628.1    CH916366    EDV96646.1    CH891690    KRK05167.1    CH933809    EDW19362.1    CH902618    EDV39164.1    CM000159    KRK02169.1    CM000363    EDX11441.1    AE014296    AGB94884.1    AAF51779.3    CH480826    EDW44419.1    CH954178    EDV52711.1    KPU77922.1    EDW94969.2    KRK02168.1    CM002912    KMZ01091.1    BT024428    AAF51781.3    ABC86490.1    AGB94885.1    KQS44393.1    KQS44394.1    KMZ01092.1    KMZ01093.1    KMZ01094.1    OUUW01000002    SPP76158.1    CH479188    EDW40489.1    CH379069    EAL31020.2    LJIJ01000447    ODM97400.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000192223    UP000027135    UP000015103    + More
UP000279307    UP000075840    UP000002358    UP000007062    UP000030765    UP000095301    UP000095300    UP000008792    UP000092553    UP000001070    UP000002282    UP000009192    UP000007801    UP000000304    UP000000803    UP000001292    UP000008711    UP000192221    UP000268350    UP000008744    UP000001819    UP000094527   

PRIDE

H9JLE3    M9PGE3    Q9VNY4    Q9VNY2   

Pfam

PF18012   PH_17        + More
PF00595   PDZ
PF00169   PH

Interpro

IPR031072   Syntrophin-1        + More
IPR036034   PDZ_sf       
IPR001478   PDZ       
IPR011993   PH-like_dom_sf       
IPR041428   PHsplit_syntrophin       
IPR015482   Syntrophin       
IPR001849   PH_domain       

SUPFAM

SSF50156   SSF50156       

Gene 3D

2.30.29.30    

CDD

cd01258  PHsplit_syntrophin

ProteinModelPortal

H9JLE3   A0A212FLF6   A0A194Q051   A0A1B6JYL0   A0A1B6HJZ0   A0A1W4X6E1   + More
A0A067R5A8   A0A0A9YGU7   A0A0V0G9Q3   A0A069DVA4   A0A023F4T2   T1HGP8   A0A1L8E3G4   A0A1L8E3S9   A0A3L8DK71   A0A0C9QT18   A0A2C9GQ69   K7IM22   A0A2M4CU94   Q7Q0A5   A0A084VI78   A0A1I8MAX9   A0A1I8MAY1   A0A1I8P747   A0A0A1WDQ1   A0A0K8V152   W8BKF2   A0A0C9R7Q3   B4LD77   A0A0M5IZA3   A0A0C9RNZ2   B4IYV9   A0A0R1E820   B4KUV6   B3MAT0   A0A0R1DYX2   B4QKM6   M9PGE3   Q9VNY4   B4IAV6   B3NIZ4   A0A0P9C2N2   B4PD37   A0A0J9UR75   Q9VNY2   A0A0Q5UKK4   A0A1W4URP9   A0A0J9RZQ8   A0A1W4URF7   A0A3B0JYI0   B4GRV4   Q2M0B5   A0A1D2MWG6  

PDB

1Z87     E-value=3.13322e-40,     Score=416

KEGG

101735742    no KO assigned | (RefSeq) beta-1-syntrophin

GO

GO:0016010   GO:0050808   GO:0005198   GO:0040011   GO:0016013   GO:0008582   GO:0008092   GO:0008307   GO:0005515   GO:0008270   GO:0006468   GO:0004672   GO:0005524   GO:0004714   GO:0007169   GO:0016020   GO:0003707   GO:0051537  

PANTHER

PTHR10554:SF12   PTHR10554  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.408

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00100

outside

1  -  513

 

 

Pi

23.279917

Theta

24.741919

Tajima's D

-0.692184

CLR

0.931157

CSRT

0.198790060496975

Interpretation

Uncertain