Gene

KWMTBOMO07401

Pre Gene Modal

BGIBMGA010322

Annotation

Leucine-rich_repeat-containing_protein_40_[Papilio_xuthus]

Location

Bomo_Chr12(-):12071177-12081724      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.564 Nuclear   Reliability : 2.019

CDS

ATGGGCTTGGTAAAATCAGCGAAGAGAACTGGACAGTTAAGTTTGTGCAACAGAGGTCTTGGAACAGTACCAGAAAATGTTTGGAAGATAGATGAATTAGTAATGGATGAAACTAAAGATGTAGATTTTACAAGATCAGATCAACAGAGTTGGTGGAATTATGAGCCATTAAAGACTCTGGATCTCAGTTCAAATGTTATAAAAATTATATCTCCGAATGTGAGACTTTTACAACAACTTATTACACTCAAGTTGCACGACAACGCTATTGAAAGCTTACCACCGGAATTTGGTGACCTCAAGAATTTATCGAATTTAAGCTTAGACCACAATCACCTGTCAGTTCTACCTAAAGAGTTCTACAGATTAACGGAACTGAGGTGGCTCGGTCTATCACACAATGCACTGAAAAAAATCGAACCAGATTTCGGAGATCTTGTCATGTTAAATTTTTTAGACTTGTCACACAACAAACTAACAGTATTACCTCCCGGAATGGGATATCTCGTGCGTCTAGTCGAACTGAATCTTTCGCACAACCAGCTACTTGAGCTACCGCCTGATATTGTCAATTTAAGAGATTTGAAAAAGCTAAACATTAGTAACAATAATCTAAAAAAGATGCCTCCGCTAGGCGAGTTGAGAAAAATGGAAATTTTGGACGCAAACCATAATGATATTGAAGAGTTGCCAGACTTCTACGGTTGTACGGCGCTCAAGGAAATATATTTAGCCAACAATTATATCAAAGAGATAACCGAAGAGTTTTGCGACCAAATGCAACACTTGAGCATATTAAACATACGCGACAATAAACTCGAAGTGTTGCCAGAGAACATATCACTATTGCAAAAATTGAAAAGGCTGGACCTAACTAATAACAATTTAAATAAGTTGCCAAGAAATTTAGGTTTAATGTCACAATTACAAAGCATCAACATGGACGGTAACAGGCTGTCGTTCGTGAGGCAGGACATCATCAGAGGAGGCACCGATCGCATGATGAAGTTTCTTCGAGATCGTATCACGGAGGAAATTTTAGCTGAAACCAGACTGGAAAACGAGTGGCCAGACAAATACACGTTGAAGAAAAGTCAGGCGCTGATGTTGCCATCGCGCGAGCTACAAAACGTACCAGACGACGTGTTCAAAGCGGCAGCCGATGCGGAGGTGCATATTATAGATCTGTCCAAGAACAAGTTAACCAGTGTGCCTTTTGGAATCTGTCAAGTTAAAGAATCGCTGACGCAATTAGTGCTATCGTCGAACAATATATCGAATTTTCCACCGGAGATAAGCAACTGCGTACATATCCAGTATATAGACTTGGGGAAGAACTGTCTCACCGAATTACCAAAGGAGATTGGTTCCTTGAAATACTTAAGGGAACTCGTCATATCGAATAACAAGTTTACGAAAATCCCTCGTTGCGTTTATGATTTGGAGAACTTGGAGATATTGCTGGCCGCCGATAATCAGATCGAGGAAATTAATGTATCGTCGGACGCGCTCGCCCGGCTCGGCAAGCTGGCCGTCCTTGACCTGGCCAATAACAGCATCTCTACAGTACCGCCCGAGCTAGGGAACTTCACGCATCTGAGGACACTGGAGTTGATGGGCAACTGTTTCCGTCAGCCTCGGCATGCCGTGTTGGCGAAGGGCACCGCCTCAGTGCTCTCGTACCTGCGGGACCGGATCCCTACCGCCTAG

Protein

MGLVKSAKRTGQLSLCNRGLGTVPENVWKIDELVMDETKDVDFTRSDQQSWWNYEPLKTLDLSSNVIKIISPNVRLLQQLITLKLHDNAIESLPPEFGDLKNLSNLSLDHNHLSVLPKEFYRLTELRWLGLSHNALKKIEPDFGDLVMLNFLDLSHNKLTVLPPGMGYLVRLVELNLSHNQLLELPPDIVNLRDLKKLNISNNNLKKMPPLGELRKMEILDANHNDIEELPDFYGCTALKEIYLANNYIKEITEEFCDQMQHLSILNIRDNKLEVLPENISLLQKLKRLDLTNNNLNKLPRNLGLMSQLQSINMDGNRLSFVRQDIIRGGTDRMMKFLRDRITEEILAETRLENEWPDKYTLKKSQALMLPSRELQNVPDDVFKAAADAEVHIIDLSKNKLTSVPFGICQVKESLTQLVLSSNNISNFPPEISNCVHIQYIDLGKNCLTELPKEIGSLKYLRELVISNNKFTKIPRCVYDLENLEILLAADNQIEEINVSSDALARLGKLAVLDLANNSISTVPPELGNFTHLRTLELMGNCFRQPRHAVLAKGTASVLSYLRDRIPTA

Uniprot

H9JLC1   A0A2H1X2Z0   A0A2A4K533   A0A194PTQ0   A0A3S2NFE5   A0A212F3I0   + More
A0A194R2S7   D7EI93   A0A1W4W897   A0A0K8TM45   A0A1Y1KX67   A0A067RXA1   A0A084WRP7   A0A182IS19   A0A182R9U5   A0A1Q3FF44   Q17FY2   A0A1S4F485   Q7QIP3   A0A182UVN1   A0A182Y318   A0A182P131   A0A182L3H7   A0A182I6V5   A0A232FJA9   A0A182TET1   A0A2M4AIC5   A0A1J1HL64   B0W215   A0A182WWL9   W5J893   A0A182QWH2   A0A2M3Z5X9   A0A2M3Z5Q3   A0A2M3Z5V8   T1PGZ9   A0A2M4BHS4   A0A2M4BHB7   A0A2M4BHB0   A0A182LZR7   A0A1I8MZJ6   K7J196   A0A1I8NUC0   U4U5Y7   A0A182S9M1   B4KBR1   A0A0L0BN41   A0A034VZG8   A0A0A1XGE0   A0A154PA54   A0A1I8MZJ8   A0A088AII6   A0A1I8NUB6   A0A0Q9VZN2   B3LWV9   A0A182WHX4   A0A0K8VA22   A0A1W4V588   A0A182FGB9   Q7KSK8   A0A0M4EUK2   A0A0N0BJ46   A0A0T6AVY2   A0A1B0CLB2   A0A0K8W2I9   A0A3B0JHX2   A0A1Y1KZS2   A0A0R1E7F9   Q9V3X1   A0A0C9QVY5   A0A034VZH2   A0A3B0K5Q2   B5DXD8   A0A310SU42   B4G3J2   B4JYB6   A0A1W4USX3   A0A1B0D8B2   A0A0Q9VZN4   A0A0P8ZZ49   A0A131XDE8   A0A0R1E6W6   A8JQZ7   A0A2A3EK13   Q86NW5   A0A3B0JD55   A0A151IGD6   E2A1S0   I5ANK6   A0A3L8DHT2   A0A0P4WRX5   A0A195BW80   V5HSX0   A0A158NCD3   A0A151WS46   A0A195F9E9   A0A131Y2L8   A0A151ITJ9   A0A023EUN6   L7MGG2  

Pubmed

19121390    26354079    22118469    18362917    19820115    26369729    + More
28004739    24845553    24438588    17510324    12364791    14747013    17210077    25244985    20966253    28648823    20920257    23761445    25315136    20075255    23537049    17994087    26108605    25348373    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    28049606    20798317    30249741    25765539    21347285    24945155    25576852   

EMBL

BABH01037159    BABH01037160    ODYU01013009    SOQ59612.1    NWSH01000173    PCG78770.1    + More
KQ459592    KPI96791.1    RSAL01000139    RVE46138.1    AGBW02010564    OWR48298.1    KQ460845    KPJ12002.1    KQ972669    EFA11666.2    GDAI01002166    JAI15437.1    GEZM01071157    JAV65999.1    KK852405    KDR24519.1    ATLV01026175    KE525407    KFB52891.1    GFDL01008875    JAV26170.1    CH477267    EAT45492.1    AAAB01008807    EAA04662.4    APCN01003701    NNAY01000140    OXU30630.1    GGFK01007161    MBW40482.1    CVRI01000010    CRK88773.1    DS231824    EDS27451.1    ADMH02002070    ETN59613.1    AXCN02000985    GGFM01003097    MBW23848.1    GGFM01003092    MBW23843.1    GGFM01003152    MBW23903.1    KA648082    AFP62711.1    GGFJ01003423    MBW52564.1    GGFJ01003309    MBW52450.1    GGFJ01003308    MBW52449.1    AXCM01000491    KB631679    ERL85345.1    CH933806    EDW14738.1    JRES01001623    KNC21417.1    GAKP01011455    JAC47497.1    GBXI01004255    JAD10037.1    KQ434856    KZC08775.1    CH940656    KRF78316.1    CH902617    EDV42747.2    GDHF01016510    JAI35804.1    AF184226    AE014297    AAD55737.1    AAF54976.1    CP012526    ALC46792.1    KQ435720    KOX78634.1    LJIG01022741    KRT78958.1    AJWK01017069    GDHF01007043    JAI45271.1    OUUW01000005    SPP80313.1    GEZM01071155    JAV66001.1    CM000160    KRK03620.1    AAF54977.3    GBYB01004806    GBYB01004807    JAG74573.1    JAG74574.1    GAKP01011450    JAC47502.1    SPP80311.1    CM000070    EDY67874.2    KQ760444    OAD60283.1    CH479179    EDW25000.1    CH916377    EDV90678.1    AJVK01004027    AJVK01004028    AJVK01004029    KRF78313.1    KPU79889.1    GEFH01004461    JAP64120.1    KRK03617.1    ABW08664.1    KZ288222    PBC32038.1    BT003605    AAO39608.1    SPP80314.1    KQ977728    KYN00260.1    GL435766    EFN72743.1    EIM52541.2    QOIP01000008    RLU19977.1    GDRN01038292    JAI67260.1    KQ976396    KYM92889.1    GANP01007215    JAB77253.1    ADTU01011818    KQ982796    KYQ50617.1    KQ981727    KYN37068.1    GEFM01003048    JAP72748.1    KQ981004    KYN10391.1    GAPW01000916    JAC12682.1    GACK01002117    JAA62917.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000007151    UP000053240    + More
UP000007266    UP000192223    UP000027135    UP000030765    UP000075880    UP000075900    UP000008820    UP000007062    UP000075903    UP000076408    UP000075885    UP000075882    UP000075840    UP000215335    UP000075902    UP000183832    UP000002320    UP000076407    UP000000673    UP000075886    UP000075883    UP000095301    UP000002358    UP000095300    UP000030742    UP000075901    UP000009192    UP000037069    UP000076502    UP000005203    UP000008792    UP000007801    UP000075920    UP000192221    UP000069272    UP000000803    UP000092553    UP000053105    UP000092461    UP000268350    UP000002282    UP000001819    UP000008744    UP000001070    UP000092462    UP000242457    UP000078542    UP000000311    UP000279307    UP000078540    UP000005205    UP000075809    UP000078541    UP000078492   

PRIDE

H9JLC1    Q7KSK8    Q9V3X1    B4G3J2    Q86NW5    V5HSX0    + More

Pfam

PF13855   LRR_8        + More
PF12799   LRR_4
PF13516   LRR_6
PF00560   LRR_1
PF15963   Myb_DNA-bind_7

Interpro

IPR001611   Leu-rich_rpt        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR025875   Leu-rich_rpt_4       
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR039467   TFIIIB_B''_Myb       
IPR001005   SANT/Myb       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF46689   SSF46689       

Gene 3D

3.80.10.10    

ProteinModelPortal

H9JLC1   A0A2H1X2Z0   A0A2A4K533   A0A194PTQ0   A0A3S2NFE5   A0A212F3I0   + More
A0A194R2S7   D7EI93   A0A1W4W897   A0A0K8TM45   A0A1Y1KX67   A0A067RXA1   A0A084WRP7   A0A182IS19   A0A182R9U5   A0A1Q3FF44   Q17FY2   A0A1S4F485   Q7QIP3   A0A182UVN1   A0A182Y318   A0A182P131   A0A182L3H7   A0A182I6V5   A0A232FJA9   A0A182TET1   A0A2M4AIC5   A0A1J1HL64   B0W215   A0A182WWL9   W5J893   A0A182QWH2   A0A2M3Z5X9   A0A2M3Z5Q3   A0A2M3Z5V8   T1PGZ9   A0A2M4BHS4   A0A2M4BHB7   A0A2M4BHB0   A0A182LZR7   A0A1I8MZJ6   K7J196   A0A1I8NUC0   U4U5Y7   A0A182S9M1   B4KBR1   A0A0L0BN41   A0A034VZG8   A0A0A1XGE0   A0A154PA54   A0A1I8MZJ8   A0A088AII6   A0A1I8NUB6   A0A0Q9VZN2   B3LWV9   A0A182WHX4   A0A0K8VA22   A0A1W4V588   A0A182FGB9   Q7KSK8   A0A0M4EUK2   A0A0N0BJ46   A0A0T6AVY2   A0A1B0CLB2   A0A0K8W2I9   A0A3B0JHX2   A0A1Y1KZS2   A0A0R1E7F9   Q9V3X1   A0A0C9QVY5   A0A034VZH2   A0A3B0K5Q2   B5DXD8   A0A310SU42   B4G3J2   B4JYB6   A0A1W4USX3   A0A1B0D8B2   A0A0Q9VZN4   A0A0P8ZZ49   A0A131XDE8   A0A0R1E6W6   A8JQZ7   A0A2A3EK13   Q86NW5   A0A3B0JD55   A0A151IGD6   E2A1S0   I5ANK6   A0A3L8DHT2   A0A0P4WRX5   A0A195BW80   V5HSX0   A0A158NCD3   A0A151WS46   A0A195F9E9   A0A131Y2L8   A0A151ITJ9   A0A023EUN6   L7MGG2  

PDB

4U09     E-value=4.71934e-25,     Score=286

KEGG

101735324    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 40-like

GO

GO:0005737   GO:0003677   GO:0005515   GO:0003676   GO:0016780   GO:0000398   GO:0003723   GO:0005215   GO:0043022   GO:0005488   GO:0003707   GO:0051537  

Length:

569

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0033

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00255

outside

1  -  569

 

 

Pi

24.480201

Theta

21.881606

Tajima's D

0.378808

CLR

0.584632

CSRT

0.48287585620719

Interpretation

Uncertain