Silkworm Genome Informatics Database

Gene

KWMTBOMO07397

Pre Gene Modal

BGIBMGA010340

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Bombyx_mori]

Location

Bomo_Chr12(+):12024465-12031493 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.677

CDS

ATGGATTCGAAGCGCTACTCGTGCGAGACGTGCGGGAAGCCGTTCGCGGAGCTGTACGCGCTGCGCCGACACTCGCGCGTGCACACCGGCGAGGCCGTCGAGAAGAAGTACAAGTGCCATCTCTGTGACAAACGGTACTCTGACAGCAGCGCGCTGGCGGCGCACGTGCAGCGGCACTCGGGGCTGCGTCCGTGCGCGTGCGACACGTGCGGCAAGGGGTTCCCGTCGGCGCGGCTGCTGGCCTCGCACCGCCGCGTGCACTCCGACCACAAGCCGCACGCCTGCCGCTACTGCCACAAACGATTCCGCCACGAGTCTTCGCGGAACACGCACCACCGCACCCACACCGGCGAGAAGCCGTTCGTTTGCTCTCAGTGCCCGAAGACCTTCATACAGAGCTCCAACCTCAGGCAGCACATGAGGACGCATACTGGAGAAAAACCACACACGTGCAAAGTCTGCGGTAATTCATTCTCGTCGAGCTCCACGCTGAAGGCGCACGAGCGCGTCCACACGGGGGAGCGACCCTACCAGTGCAACGTCTGCGGGAAGCGATTCAGTCGTATGAACCTGCGCGCTCACATGGCGACACACACGGGCGAGCGGCCCCACGAGTGCAGCGTCTGCCACAAGCGGTTCCTGTACCTCACGCGACTGCGCGACCACGCACGGGTACATACAGGTGAAAGGCCCTTCGTATGTGAGAATTGCCAACAAGCGTTCCCAACGAAATCGCACCTGGTGCGGCATGTTAAATCTCATCATAACGACAAAGTGAAACAACAAATTATTAAAAACAGAAAAACGAAAATACTGAACAGATTAATTAATGAAACCATATGTGATAATAATAAAGGCGTTGAACATATTGAGGAGATTGAAAAAGCAAACGACACTGAATGTAGAACAATAATGTTTGACACCGAAGAGGGACCCCTGGAGGTCAGCGGCGAATTAGTTCTTGAAGACGATAGCAACATTAAAACAGAAGTTTTAGTTTTTGACAACAGTCAAAATTTCCAAAGTGCGAACATACTGAACGCTAGCGAAATAATCGTCAATGACTATGCTAATAATTTAGTGGCGGTGAGCGACGGCGATACTATATCCGCGACGAGCGCAGTTCTAGAGGGAACCACAGTAAAGCTCTACCAGTTAGACCAAAGTTTATTACAAATTCACAATGCAGGTGGGCGGGTTACTATTAGCAAAATAACTAGTAAGATGACTGCTAATTTTTAA

Protein

MDSKRYSCETCGKPFAELYALRRHSRVHTGEAVEKKYKCHLCDKRYSDSSALAAHVQRHSGLRPCACDTCGKGFPSARLLASHRRVHSDHKPHACRYCHKRFRHESSRNTHHRTHTGEKPFVCSQCPKTFIQSSNLRQHMRTHTGEKPHTCKVCGNSFSSSSTLKAHERVHTGERPYQCNVCGKRFSRMNLRAHMATHTGERPHECSVCHKRFLYLTRLRDHARVHTGERPFVCENCQQAFPTKSHLVRHVKSHHNDKVKQQIIKNRKTKILNRLINETICDNNKGVEHIEEIEKANDTECRTIMFDTEEGPLEVSGELVLEDDSNIKTEVLVFDNSQNFQSANILNASEIIVNDYANNLVAVSDGDTISATSAVLEGTTVKLYQLDQSLLQIHNAGGRVTISKITSKMTANF

Uniprot

H9JLD9 A0A2A4K4D6 A0A2H1W646 A0A3S2LXB1 A0A194PTP5 A0A194R810 + More

Pubmed

19121390 26354079

EMBL

BABH01037154 BABH01037155 NWSH01000173 PCG78774.1 ODYU01006279 SOQ47974.1 + More
RSAL01000139 RVE46133.1 KQ459592 KPI96786.1 KQ460845 KPJ12006.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000053240

PRIDE

H9JLD9

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JLD9 A0A2A4K4D6 A0A2H1W646 A0A3S2LXB1 A0A194PTP5 A0A194R810 + More

PDB

5WJQ E-value=5.28953e-48, Score=482

KEGG

101746984 K09228 KRAB domain-containing zinc finger protein | (RefSeq) gastrula zinc finger protein XlCGF57.1-

GO

GO:0003676 GO:0008270 GO:0005634 GO:0046872 GO:0016780 GO:0000398 GO:0003723 GO:0005215 GO:0043022 GO:0005488 GO:0003707 GO:0051537

Length:

413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00021

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04348

outside

1 - 413

Pi

17.134074

Theta

18.044437

Tajima's D

-0.657697

CLR

0.664527

CSRT

0.205889705514724

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics