Silkworm Genome Informatics Database

Gene

KWMTBOMO07379

Pre Gene Modal

BGIBMGA010353

Annotation

transcription_factor_AP-4_[Bombyx_mori]

Location

Bomo_Chr12(-):11562549-11567049 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 3.94

CDS

ATGTCATTGCACGGTAATGACGTTTGTTTACTAGAAGTAGAAGATTACAACTTGTACGAAGAAGAAGCATCGGATCACACGTTTGTCAGTGAGAAACATTCGACATCAGGGAGTAAGACAATGGAGGCAGAAAAAAGGATTAGACGAGAAATTGCCAACAGCAATGAACGCCGACGAATGCAGAGCATCAATGCAGGTTTTCAAGCTTTGCGGACTTTACTTCCACGTCATGAGGGCGAAAAATTAAGCAAAGCAGCTATTTTACAACAAACTGCAGAATACATTTACAATCTTGAACAAGAGAAAACAAGACTACTTTCACAGAATTGTCAACTAAAGAGATTACTAAATCAGCATGAAGGAGGTGAAGTTCCATTGAAAAAAAGAAAAGGTGATATACTAACACATATACCATCAGTCATACCTCCTGATTCTACAGACGATACTTTATCGAATTCACGATCACCCGAACCAGTTGCTGTTATAACAATGTCAAACACATCACAGAAAAAAGATTCTGAGTGTGTAGAATTACGGGCGCAACTTGAACAGGAACGGAGATTACGTCGCTTGCTTGCAGAGCGGTTCAACGCACTAGAAACGCAGGTCTATCCTAAAACAGGGCACGACATCGCGCGACCTTTATCAGGCCCTATCGAACAGACTGAAATCTCAGACTGCAAAGTGGAGAATGAAGAAATTCCCATAAAACCTGTTGAGCCACCCCCACCCACAACTCAATTACTTGAAGCCGCCATCAAGGCTGAGCCCCGAGTGGAAGTCGAGGTACTGCCAGAGGCGAATCAAGACAGCTCTTCGCGGCTCTACCTAGCAAGCACGAGCCGCCAAAACCTCGAGACCATTGTGGAGGCTATCCGACACTTGGAGGGCGACCACCTGTTTCGCGAGGAGACGGCCGAAGCGCCCCTAGCGCTAACCAAGAAGCCGAGTGCGCCCCCGCCACGACCCGGTGTCATCGTCGTCAAGCACTTGTGA

Protein

MSLHGNDVCLLEVEDYNLYEEEASDHTFVSEKHSTSGSKTMEAEKRIRREIANSNERRRMQSINAGFQALRTLLPRHEGEKLSKAAILQQTAEYIYNLEQEKTRLLSQNCQLKRLLNQHEGGEVPLKKRKGDILTHIPSVIPPDSTDDTLSNSRSPEPVAVITMSNTSQKKDSECVELRAQLEQERRLRRLLAERFNALETQVYPKTGHDIARPLSGPIEQTEISDCKVENEEIPIKPVEPPPPTTQLLEAAIKAEPRVEVEVLPEANQDSSSRLYLASTSRQNLETIVEAIRHLEGDHLFREETAEAPLALTKKPSAPPPRPGVIVVKHL

Uniprot

B2CPJ9 A0A2A4J5Q5 A0A2H1VNC2 A0A194Q027 Q38IW6 A0A194R2K5 + More
A0A1E1WRW4 A0A212F3H7 A0A3S2LWZ5 A0A0L7LR91 D2A2G8 A0A1Y1MZU3 A0A1Y1N2S2 A0A1W4XJY8 A0A3Q0IWR3 V9L2U0 V9KSB4 A0A3Q3NF87

Pubmed

26354079 20088871 22118469 26227816 18362917 19820115 + More
28004739 24402279

EMBL

EU534187 ACB32276.1 NWSH01003223 PCG66732.1 ODYU01003476 SOQ42313.1 + More
KQ459592 KPI96770.1 DQ224406 ABB02533.1 KQ460845 KPJ12023.1 GDQN01001397 JAT89657.1 AGBW02010564 OWR48287.1 RSAL01000139 RVE46162.1 JTDY01000274 KOB77960.1 KQ971338 EFA02027.2 GEZM01016682 JAV91191.1 GEZM01016683 JAV91190.1 JW873234 AFP05751.1 JW869201 AFP01719.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000283053 UP000037510 + More
UP000007266 UP000192223 UP000079169 UP000261640

PRIDE

B2CPJ9

Pfam

PF00010 HLH

Interpro

IPR036638 HLH_DNA-bd_sf + More
IPR011598 bHLH_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

B2CPJ9 A0A2A4J5Q5 A0A2H1VNC2 A0A194Q027 Q38IW6 A0A194R2K5 + More
A0A1E1WRW4 A0A212F3H7 A0A3S2LWZ5 A0A0L7LR91 D2A2G8 A0A1Y1MZU3 A0A1Y1N2S2 A0A1W4XJY8 A0A3Q0IWR3 V9L2U0 V9KSB4 A0A3Q3NF87

PDB

2YPB E-value=0.00343838, Score=95

KEGG

100144574 K09108 transcription factor AP-4 | (RefSeq) Tfap4; transcription factor AP-4

GO

GO:0046983 GO:0005634 GO:0003700 GO:0006357 GO:0006464 GO:0003697 GO:0004520 GO:0006281 GO:0006259 GO:0043022 GO:0005488 GO:0003707 GO:0051537

Length:

331

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00797

outside

1 - 331

Pi

16.612535

Theta

13.976329

Tajima's D

0.458351

CLR

0.656883

CSRT

0.512024398780061

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics