Silkworm Genome Informatics Database

Gene

KWMTBOMO07374 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005177

Annotation

splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]

Location

Bomo_Chr12(-):11515530-11520349 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.247

CDS

ATGCAAATGCAAGCCATGAATAACTTCGGCAATCAAAGAGGATTTGGTGGACCACCGCAACCTCAACGGCAAGGAGGTCGTCGTGGTAATAACAGAGGATTTCGTAATTCGAGATTTGAGCATAATAGACCTCAACAGGGACAAGGAGGTCAACGGCCTAGTAATGAGAAGGCAACATCACAATCGAATCAGCCTGCTGAGAAATCTAATCAACAGCAGCAGCAGCAAAACCAACCTAAACAGCAATCGTCTAGGCCACAGCAAAAAATGGAAACTACAAATGTACCACAATCCACCAATCAACAACAACAGAGCCAACAACAACCACAACAACAGCAACAAATACCACAACAACAGCAGAAACAGATGCAACAACAACAACAGCAGAAACCTGTTAATGCTCCTGCAAAATCGGAACCTCAAGAAAATACTGACAAACCGAAATTTGAACCAAATAACCAGAACCAACAAATTAATCAACATAACAATCTAAACACGCAGCAACAAAAGAATATTAATGGAAACTTCGGTGGACCTAATAAACAAGGAGGATCCTGGAACCATGGTGGTGGACCTGGGAACAAACAAGGAAACAAACCCTTTGGTTCTAAGTCTTCTGGTGGTCCACTTGGGTCTGGTGGTACTGGTCCAGCTCGCAATCAACAGCGTAATAGCAACATGCGGGGACCCCCAGGGCAGGATAACATGAAGCCTGCCCAAAGAGAGGAAATTATTTTATCTAATAAACTCAAGGATTTGCAAGGACCTCTGTTTGACTTGCCACCAATGGAACAATCAGAAGTGAAGTTTAATGGGAGAAGCAGATTATACATAGGCAATTTAACAAATGATGTGACTGAAGAGGAAATTATGAAGATGTTTAGTCCCTTTGGAGAAGCTTCTGAATTATTCTTGAACAAAGAAAAGAACTTTGGATTCATTAAAATGGATTATAGAGTTAATGCAGAGAGAGCAAAACGTGAATTGGATGGAAAATTGAGGAACAGTAGAACCCTGAGAGTAAGGTTTGCACCACACAATAGTGCAGTGCGTGTAAAAAACCTTCCGCCATTTGTTTCAAATGAGCTATTATATCGTTCATTTGAAATATTTGGAAAAATTGAGAGGGCTTATGTAAAAGTTGATGAAAGAGGAAAAACTCTAGGAGAAGGTGTTGTAGAATTTGCACGCAAACCAAGTGCCTTATCTGCAATTCGTAACTGCACAGAAAAATGTTTCTTCTTGACATCATCCCTACGCCCAGTCATTGTTGAAAGCTTTGAAGAACCCGATGAATTCGATGGATATCCTGAAAAGAATCTTCCCAAGAAACATCCAGAATTTACGAAAGCTCGTGAGCTTGGACCACGTTTCTCAGAGTTAAATAGTTTCGAACATGAATATGGAACTAGATGGAAGCAACTGCATGAACTTCATCGTCAGAAAGAAGAGGCGCTGAAGAAAGAGCTTGCTGCTGAAGAAGAAAAACTTGAGGCACAAATGGAGTATGCCAAGTAA

Protein

MQMQAMNNFGNQRGFGGPPQPQRQGGRRGNNRGFRNSRFEHNRPQQGQGGQRPSNEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVPQSTNQQQQSQQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPKFEPNNQNQQINQHNNLNTQQQKNINGNFGGPNKQGGSWNHGGGPGNKQGNKPFGSKSSGGPLGSGGTGPARNQQRNSNMRGPPGQDNMKPAQREEIILSNKLKDLQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMDYRVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCTEKCFFLTSSLRPVIVESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHEYGTRWKQLHELHRQKEEALKKELAAEEEKLEAQMEYAK

Uniprot

Q2F5M7 Q0ZAL3 H9J6N5

Pubmed

19121390

EMBL

DQ311396 ABD36340.1 DQ648526 ABG43001.1 BABH01042330

Proteomes

UP000005204

PRIDE

Q2F5M7 Q0ZAL3 H9J6N5

Pfam

PF08075 NOPS + More
PF00076 RRM_1

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR012975   NOPS
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

Q2F5M7 Q0ZAL3 H9J6N5

PDB

4WII E-value=1.04323e-51, Score=515

KEGG

692965 K13219 splicing factor, proline- and glutamine-rich | (RefSeq) Psf, Sfpq; PTB-associated splicing fa

GO

GO:0003723 GO:0003676 GO:0000166 GO:0006412 GO:0005852 GO:0006446 GO:0043022 GO:0005488 GO:0003707 GO:0051537

Length:

505

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00356

outside

1 - 505

Pi

21.556357

Theta

18.242398

Tajima's D

0.633969

CLR

0.44

CSRT

0.55857207139643

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
31250652	NFGFIKMAQR	100.00	2e-06
28556443	VVIALGDHLNAK	100.00	4e-05
28556443	FSELNSFEHEYGTR	100.00	0.002
28556443	LYIGNLTNDVTEEEIMK	100.00	0.002
28556443	VRFAPHNSAVR	100.00	0.002
28556443	TLGEGVVEFAR	100.00	0.002
26822097	IWNYFQK	100.00	0.009
26280517	GPPGPPPPNADRFNR	100.00	0.009
28556443	NLPPFVSNELLYR	100.00	0.023
28556443	NLPPFVSNELLYR	100.00	0.023
28556443	MFSPFGEASELFLNK	100.00	0.023
28556443	MFSPFGEASELFLNK	100.00	0.023

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics