SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07373  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005177
Annotation
splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.515
 

Sequence

CDS
ATGGATGTCCTGTGCAGGTACGAGCACGAGACGGAGCTGCTGCGCGAGCAGCTGCGGCAGCGCGAGCAGGACCGCGAGCGGCAGAAGCGCAGCTGGGAGATGGCGGAGCGCGCGGCCGACGAGCGGCGCGAGGCCGAGCGCCAGCAGCTCATGCGCCACGAGGAGGAGCTGTCGCAGCGCATGCGCCTGCAGGACGACGAGCTGCGCCGCCGCCAGCAGGAGAACACGCTCTTCGTGCAGGCCCAGAGATTGAACTCTATGCTGGATCGTCAAGAACAAGGAATGTTTGATCAACAGCAGCCAATGGATGGAGGCTACAGAGACCAGTACGACATGCAGTGCGGGAGTTATGACGACATGCCGCCAGGCCGCGGTTGGGATGGACCTCGCCCATTGGATGATTACCCTAATAAACGTCGTCGTTTCTAA
Protein
MDVLCRYEHETELLREQLRQREQDRERQKRSWEMAERAADERREAERQQLMRHEEELSQRMRLQDDELRRRQQENTLFVQAQRLNSMLDRQEQGMFDQQQPMDGGYRDQYDMQCGSYDDMPPGRGWDGPRPLDDYPNKRRRF

Summary

Pfam
PF08075   NOPS        + More
PF00076   RRM_1
Interpro
IPR035979   RBD_domain_sf        + More
IPR012975   NOPS       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
SUPFAM
SSF54928   SSF54928       
Gene 3D

Ontologies

Topology

Length:
142
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.43029
outside
1  -  142
 
 

Population Genetic Test Statistics

Pi
21.688881
Theta
21.528541
Tajima's D
0.092893
CLR
0.445747
CSRT
0.398330083495825
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 DIQGPIFDIPPMEQSEVK 100.00 2e-05
26280517 QEISGNVPPIDIIWIK 100.00 2e-05
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