Silkworm Genome Informatics Database

Gene

KWMTBOMO07369

Pre Gene Modal

BGIBMGA010603

Annotation

PREDICTED:_synaptojanin-1_[Papilio_machaon]

Location

Bomo_Chr12(-):11387659-11391099 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.414 PlasmaMembrane Reliability : 1.391

CDS

ATGGCTATGTCCAAAGGCTTTAAAGTTCTGGAGAAATCATCGCCCCCCAGTCCGTATAGCATAATATTACAACACAGAAACAAAGACACTGCACTTCTTTTCGAATCTCAAGCCGTTGTTTCCTTATCATCGCAAGAAACAGAAACTTTAAGGAAACAATACCATAAAGTTGCAGACGCTTATGGATGTCTTGGAGTACTTCAGCTAAATTCTGGTGAAAGCTGTCTTCTGTATCTTGTGTTAATCACCGGATGCTCTTCTGTTGGTAAAGTGGGGGATTTAGAAGTATTTAAGATAACGCAAACTCAATTTCTGCCACTGTTCTACCAATCGCAAGGTGATGATAAGGTTTCGGAAGTCCGAAAATTAATTAATTCAGGTACATTTTATTTCTCTTGGTATTCTGGCAAAAACAATGATAATCTTTTTGATTTGACTCTGTGTGCCCAAAGAAAAAGTAAAGGAGCCAACCCTGATAATAGGTTCTTTTGGAATAGAACACTGTACATACATCTAATCAGATATGGCATAGATTGTGATGAGTGGCTAACTCGAGCAATGTGTGGATCTGTAGAAATACGCACTATTTATGTTGGGCATCGTCAAGCTAGGGCTGTACTTGTCTCAAGACTTAGTTGTGAAAGGGCTGGAACTAGATTTAATGTGCGAGGTTGTAATGATGATGGAAATGTGGCAAACTTTGTAGAAACTGAACAAGCTGTTTACATTGATGATTCTGTAGCATCTTATATACAAACAAGAGGGTCTGTGCCATTGTTTTGGGAACAACCTGGAATACAAGTTGGCTCACACAAAGTAAAAATGTCAAGAGGCTATGATGCATCAACAAGTGCTTGTGAGAGACATTTTGCCCAGTTAAAGCGTAATTATGGATCTGTAATAGTTGTAAATCTGCTTGGATCTAACATGATTGGGGGTAGTGAAGGTGAGGCAACATTAAGTAATGCTTTCCAGAAACACATTAATGAATCTCCACATTCTGATGTCCTACAAATTGTTTTTGACTATCATCAGGAAGTAAGAGCAACATCCCAAGAGATAGCTCTATCAAAATTTAAACAGAATATTGAGAAATATTATGATGAGATTGGGATTTTTAGTGCAAAAGGATTTGAAGAAGTTTACAAACAGATGTGGGTGAATAATGGAAATGAAATATCTAAAATTTATGCTGGAACTGGTGCAATTCAAGGAGGCTCCAAACTAATTGATGGAGCTCGATCTGCTGCCAGGACTATCCAGAACAATTTATTAGACAACTCAAAGCAAGAAGCAATTGATATTTTATTACTTGGTTCAACATTAAACTCTGAACTGGCAGACCGCACAAGAATACTGTTGCCATCTAACATACTACACACTTCTACAGCTATCTTGAGGGAAATGTGTCGTAGAACGAATGAATTCACTCAACCTTCAACTCTTAGAATAACTATTGGCACATACAATGTGAATGGTGGTAAACATTTCAGAAGTCTTGCTTATAAGGATGTTTCATTATCTGACTGGTTATTAGATTGTCCAAATTCATCTTTGGTAAATACAGTCAATCTGAAGGATCATCCTTCTGACATATTTGCAATAGGCTTTGAAGAAATAGTTGATTTAAATGCTAGTAATATTATGGCAGCTAGTACTGATAATGCAAAAGCATGGAGTGAGGAACTGGAAAAAGTGTTAGGCAGAGATGCATCTTATACACTTCTGTCTAGTCATCAACTTGTTGGAGTATGTTTATTCATATTTGTTAGAAAAGATTTAATACCGCATATCAGAGATGTAGCACTTGATTCAGTTAAGACTGGACTTGGAGGGGCTACTGGGAATAAAGGTGCTGTGGGAATAAGAATGGTAATTTATGGAACCTCACTATGTTTTGTTTGTGCACATTTTGCTGCTGGTCAATCACAAGTTACAGAGCGTAATGCTGATTACACAGAAATTACTAGAAAAATTGCATTTCCCATGGGTCGCTCTCTGTACTCCCATGACTATGTATTTTGGTGTGGTGATTTTAATTATCGTATAGATTTAGATAAAGATGAAGTACGCCTTTTGGCTTCACAAAATAATTTGCAAAGGCTTTTGGAGCAAGATCAACTTTTACAGCAAAAGTCACAAGATTTAGTTTTCAAAAACTGCTTTGAAGGAGAAATTACATTTCCTCCAACTTATAAATATGATCTATTTAGTGATGATTATGATACCAGTGAAAAATGCAGAGCACCAGCATGGACTGACCGTGTATTGTGGAGAAGCAGAAAATATACTATTGATCCTGAAACCACATCAGAATTATCAGCAGGGAAACTTCTACACTATGGAAGGGCAGAATTGAAACAAAGTGACCACAGACCTGTAATAGCAATATTAGAAATAGAAGTGTTACAGGTCAGCTATACAAAATGCATGGAAGTTTTTTATGAAGTAGTAAAAGATCTGGGTCCTCCTGATGCTTGTATAATTGTGCAACCATTACAAGACCTTAATACTGACGAGTCTGTATTTGATGATAATGTCATGGCTGCTGTACTCCAAGAGTTAGCTACTTTTGGTGAAGTAACCTTAGTTCGTTTTATAGATGAACACACTTTGAGCATCACTTTCAGAGAGGGTCAAAATGCTTTAGCAGCAGCTCAAAAAGCAACTTTATCAGTTTGTACAGTTCCATTGCAAATTTTCTTGAAATCTCCAAACTGGGTTAATATTGTTCGCACAGAAATTGGTTTGTGTACAAACAACACAATACCTTTATATGGTGAAATTCAATCTGAAAGACCACTGAGATCTGCTCCACCTACTCCTAGAAAGCAACAGCCGAGCAGACCCCCAGCTCCTTCACCAACACCATTGGTTCTATCGAGATTACCAGCAGTGAGTCCTGCACGACCTCCACCCCCAAGACCTGCACCTTTGTCTCCTGAAACTAGTAAAGTTGTGGGACAGCCCCCCATTGTTTCCCCGCCCGCCGACAGTGTTCCGCCACCTAGTTGTGCACCTCCTCCCCCACCGGAACCAAGTTCACCGCCGCCACTTGGACCTCCGCCTCCTGTGCCTGCTAGACAAGGTGCTCCGCCACCCTTACCTGCGCGGCCGCGTCCTACGAATTAA

Protein

MAMSKGFKVLEKSSPPSPYSIILQHRNKDTALLFESQAVVSLSSQETETLRKQYHKVADAYGCLGVLQLNSGESCLLYLVLITGCSSVGKVGDLEVFKITQTQFLPLFYQSQGDDKVSEVRKLINSGTFYFSWYSGKNNDNLFDLTLCAQRKSKGANPDNRFFWNRTLYIHLIRYGIDCDEWLTRAMCGSVEIRTIYVGHRQARAVLVSRLSCERAGTRFNVRGCNDDGNVANFVETEQAVYIDDSVASYIQTRGSVPLFWEQPGIQVGSHKVKMSRGYDASTSACERHFAQLKRNYGSVIVVNLLGSNMIGGSEGEATLSNAFQKHINESPHSDVLQIVFDYHQEVRATSQEIALSKFKQNIEKYYDEIGIFSAKGFEEVYKQMWVNNGNEISKIYAGTGAIQGGSKLIDGARSAARTIQNNLLDNSKQEAIDILLLGSTLNSELADRTRILLPSNILHTSTAILREMCRRTNEFTQPSTLRITIGTYNVNGGKHFRSLAYKDVSLSDWLLDCPNSSLVNTVNLKDHPSDIFAIGFEEIVDLNASNIMAASTDNAKAWSEELEKVLGRDASYTLLSSHQLVGVCLFIFVRKDLIPHIRDVALDSVKTGLGGATGNKGAVGIRMVIYGTSLCFVCAHFAAGQSQVTERNADYTEITRKIAFPMGRSLYSHDYVFWCGDFNYRIDLDKDEVRLLASQNNLQRLLEQDQLLQQKSQDLVFKNCFEGEITFPPTYKYDLFSDDYDTSEKCRAPAWTDRVLWRSRKYTIDPETTSELSAGKLLHYGRAELKQSDHRPVIAILEIEVLQVSYTKCMEVFYEVVKDLGPPDACIIVQPLQDLNTDESVFDDNVMAAVLQELATFGEVTLVRFIDEHTLSITFREGQNALAAAQKATLSVCTVPLQIFLKSPNWVNIVRTEIGLCTNNTIPLYGEIQSERPLRSAPPTPRKQQPSRPPAPSPTPLVLSRLPAVSPARPPPPRPAPLSPETSKVVGQPPIVSPPADSVPPPSCAPPPPPEPSSPPPLGPPPPVPARQGAPPPLPARPRPTN

Uniprot

H9JM51 A0A1E1WIK9 A0A2A4JEM4 A0A194R3D2 A0A194PH16 A0A0L7L1V6 + More
A0A2H1VAR9 A0A0C9RS03 A0A2A3ENV8 A0A0N0U570 A0A0B4J2N1 A0A1L8DZ82 E2C5K5 A0A182GCS9 A0A1B0CM70 A0A154PLR0 A0A182J0G8 A0A182FTM2 W5JLZ7 A0A182PGC8 A0A1B6C9Y5 A0A1Q3FB20 A0A1Q3FB40 A0A182YQ92 A0A1Q3FB67 A0A1W4X504 A0A1Y1KRY6 B0W579 A0A084WUK2 E9IY54 A0A026WCE8 E2A9W8 A0A182WDA1 Q7Q001 A0A182KT07 A0A182JRT8 A0A158NRT8 F4WQR8 A0A2C9GQ25 A0A182RAJ6 A0A182QU81 A0A182MXB3 A0A0L7RBE4 A0A1B6LUS5 A0A0J7KZ21 D6W6I0 A0A195ESM9 A0A0L0BTM4 A0A2M4BAA8 A0A1I8MFI7 A0A0Q9WR72 A0A0J9RIN8 A0A1W4UZP4 Q5U0V7 A0A1B0D8V0 A0A0P8XPS9 A0A0R1DV32 A0A0Q5VXQ2 A0A0K8UWA6 I7KU16 A0A0K8WIK1 A0A0K8VGA8 A0A034WBS8 A0A1I8PZL1 A0A2P8YVN2 A0A3B0J2I5 A0A0A1X479 A0A1B6L2T7 E0VUX1 A0A1A9XVZ1 W8B3Z9 A0A1B0AP33 A0A1A9WXJ7 A0A195BR14 A0A232FD73 A0A1B0FPE2 A0A1A9UXI6 A0A1A9Z7P1 A0A067RG31 A0A0Q9W3U2 A0A0Q9XMC0 A0A0M4ELI0 Q0IEC5 K7IPB4 A0A182U7A4 A0A2M4AN36 A0A182WZZ7 A0A182MH52 T1GR85 A0A195EEZ0 A0A195CZW0 A0A151X3Z7 A0A2R7W267 A0A1D2N5T8 A0A023F0E6 A0A0K8SU19 A0A0A9YSU9 A0A0K8SU30 A0A0A9YSU7

Pubmed

19121390 26354079 26227816 20798317 26483478 20920257 + More
23761445 25244985 28004739 24438588 21282665 24508170 30249741 12364791 14747013 17210077 20966253 21347285 21719571 18362917 19820115 26108605 25315136 17994087 22936249 10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867 26109357 26109356 17550304 18057021 15632085 23185243 25348373 29403074 25830018 20566863 24495485 28648823 24845553 17510324 20075255 27289101 25474469 25401762 26823975

EMBL

BABH01033516 BABH01033517 GDQN01004266 JAT86788.1 NWSH01001812 PCG70044.1 + More
KQ460845 KPJ12034.1 KQ459603 KPI92691.1 JTDY01003481 KOB69488.1 ODYU01001559 SOQ37943.1 GBYB01011365 JAG81132.1 KZ288203 PBC33418.1 KQ435793 KOX74178.1 GFDF01002345 JAV11739.1 GL452770 EFN76818.1 JXUM01054651 JXUM01054652 JXUM01054653 JXUM01054654 JXUM01054655 JXUM01054656 AJWK01018290 KQ434977 KZC12811.1 AXCP01007472 ADMH02001047 ETN64328.1 GEDC01027000 JAS10298.1 GFDL01010271 JAV24774.1 GFDL01010240 JAV24805.1 GFDL01010245 JAV24800.1 GEZM01077796 JAV63171.1 DS231841 EDS34826.1 ATLV01027095 KE525423 KFB53896.1 GL766908 EFZ14499.1 KK107274 QOIP01000008 EZA53747.1 RLU19708.1 GL437965 EFN69777.1 AAAB01008986 EAA00566.4 ADTU01024307 GL888275 EGI63431.1 APCN01003271 AXCN02001681 KQ414617 KOC68184.1 GEBQ01012523 JAT27454.1 LBMM01001759 KMQ95802.1 KQ971307 EFA11114.1 KQ981993 KYN30889.1 JRES01001352 KNC23377.1 GGFJ01000828 MBW49969.1 CH963848 KRF97859.1 CM002911 KMY95702.1 KMY95703.1 KMY95704.1 AE013599 BT016135 AAF46796.1 AAG22194.1 AAV37020.1 AFH08207.1 AJVK01004110 AJVK01004111 CH902619 KPU76602.1 CM000158 KRJ99680.1 KRJ99681.1 KRJ99682.1 CH954179 KQS62318.1 KQS62319.1 GDHF01027874 GDHF01021679 JAI24440.1 JAI30635.1 CM000071 EAL26281.1 KRT02955.1 GDHF01004197 GDHF01001333 JAI48117.1 JAI50981.1 GDHF01026534 GDHF01014355 GDHF01013017 JAI25780.1 JAI37959.1 JAI39297.1 GAKP01005911 GAKP01005909 JAC53041.1 PYGN01000334 PSN48304.1 OUUW01000001 SPP75377.1 GBXI01014548 GBXI01014001 GBXI01008158 GBXI01000517 JAC99743.1 JAD00291.1 JAD06134.1 JAD13775.1 GEBQ01021960 JAT18017.1 DS235797 EEB17177.1 GAMC01013268 GAMC01013267 GAMC01013265 JAB93287.1 JXJN01001122 KQ976424 KYM88578.1 NNAY01000447 OXU28317.1 CCAG010008035 KK852497 KDR22712.1 CH940648 KRF79769.1 KRF79770.1 CH933808 KRG04961.1 KRG04962.1 KRG04963.1 KRG04964.1 CP012524 ALC42442.1 CH477764 EAT36486.1 GGFK01008885 MBW42206.1 AXCM01011152 CAQQ02092237 CAQQ02092238 CAQQ02092239 CAQQ02092240 CAQQ02092241 CAQQ02092242 KQ978983 KYN26840.1 KQ977041 KYN06142.1 KQ982562 KYQ54938.1 KK854247 PTY13669.1 LJIJ01000198 ODN00591.1 GBBI01004298 JAC14414.1 GBRD01009019 JAG56802.1 GBHO01010982 GBHO01010979 GDHC01016113 JAG32622.1 JAG32625.1 JAQ02516.1 GBRD01009018 JAG56803.1 GBHO01010984 GBHO01010981 GDHC01012044 JAG32620.1 JAG32623.1 JAQ06585.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000037510 UP000242457 + More
UP000053105 UP000005203 UP000008237 UP000069940 UP000092461 UP000076502 UP000075880 UP000069272 UP000000673 UP000075885 UP000076408 UP000192223 UP000002320 UP000030765 UP000053097 UP000279307 UP000000311 UP000075920 UP000007062 UP000075882 UP000075881 UP000005205 UP000007755 UP000075840 UP000075900 UP000075886 UP000075884 UP000053825 UP000036403 UP000007266 UP000078541 UP000037069 UP000095301 UP000007798 UP000192221 UP000000803 UP000092462 UP000007801 UP000002282 UP000008711 UP000001819 UP000095300 UP000245037 UP000268350 UP000009046 UP000092443 UP000092460 UP000091820 UP000078540 UP000215335 UP000092444 UP000078200 UP000092445 UP000027135 UP000008792 UP000009192 UP000092553 UP000008820 UP000002358 UP000075902 UP000076407 UP000075883 UP000015102 UP000078492 UP000078542 UP000075809 UP000094527

PRIDE

H9JM51

Pfam

PF08952   DUF1866        + More
PF02383   Syja_N
PF03372   Exo_endo_phos
PF17913   FHA_2
PF08645   PNK3P

Interpro

IPR000300   IPPc        + More
IPR015047   DUF1866
IPR002013   SAC_dom
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR005135   Endo/exonuclease/phosphatase
IPR034972   SYNJ1
IPR036691   Endo/exonu/phosph_ase_sf
IPR035979   RBD_domain_sf
IPR027417   P-loop_NTPase
IPR013954   PNK3P
IPR041388   FHA_2
IPR006551   Polynucleotide_phosphatase
IPR008984   SMAD_FHA_dom_sf
IPR006550   PNKP
IPR000253   FHA_dom
IPR023214   HAD_sf
IPR006549   HAD-SF_hydro_IIIA
IPR036412   HAD-like_sf
IPR034971   SYNJ1_RRM

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928
SSF56784   SSF56784
SSF49879   SSF49879
SSF52540   SSF52540

Gene 3D

3.30.70.330 3.60.10.10 3.40.50.1000

CDD

cd00060 FHA
cd12719 RRM_SYNJ1

ProteinModelPortal

H9JM51 A0A1E1WIK9 A0A2A4JEM4 A0A194R3D2 A0A194PH16 A0A0L7L1V6 + More
A0A2H1VAR9 A0A0C9RS03 A0A2A3ENV8 A0A0N0U570 A0A0B4J2N1 A0A1L8DZ82 E2C5K5 A0A182GCS9 A0A1B0CM70 A0A154PLR0 A0A182J0G8 A0A182FTM2 W5JLZ7 A0A182PGC8 A0A1B6C9Y5 A0A1Q3FB20 A0A1Q3FB40 A0A182YQ92 A0A1Q3FB67 A0A1W4X504 A0A1Y1KRY6 B0W579 A0A084WUK2 E9IY54 A0A026WCE8 E2A9W8 A0A182WDA1 Q7Q001 A0A182KT07 A0A182JRT8 A0A158NRT8 F4WQR8 A0A2C9GQ25 A0A182RAJ6 A0A182QU81 A0A182MXB3 A0A0L7RBE4 A0A1B6LUS5 A0A0J7KZ21 D6W6I0 A0A195ESM9 A0A0L0BTM4 A0A2M4BAA8 A0A1I8MFI7 A0A0Q9WR72 A0A0J9RIN8 A0A1W4UZP4 Q5U0V7 A0A1B0D8V0 A0A0P8XPS9 A0A0R1DV32 A0A0Q5VXQ2 A0A0K8UWA6 I7KU16 A0A0K8WIK1 A0A0K8VGA8 A0A034WBS8 A0A1I8PZL1 A0A2P8YVN2 A0A3B0J2I5 A0A0A1X479 A0A1B6L2T7 E0VUX1 A0A1A9XVZ1 W8B3Z9 A0A1B0AP33 A0A1A9WXJ7 A0A195BR14 A0A232FD73 A0A1B0FPE2 A0A1A9UXI6 A0A1A9Z7P1 A0A067RG31 A0A0Q9W3U2 A0A0Q9XMC0 A0A0M4ELI0 Q0IEC5 K7IPB4 A0A182U7A4 A0A2M4AN36 A0A182WZZ7 A0A182MH52 T1GR85 A0A195EEZ0 A0A195CZW0 A0A151X3Z7 A0A2R7W267 A0A1D2N5T8 A0A023F0E6 A0A0K8SU19 A0A0A9YSU9 A0A0K8SU30 A0A0A9YSU7

PDB

1I9Z E-value=6.08419e-55, Score=546

KEGG

101737247 K20279 synaptojanin [EC:3.1.3.36] | (RefSeq) synaptojanin-1

PATHWAY

00562    Inositol phosphate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04070    Phosphatidylinositol signaling system - Bombyx mori (domestic silkworm)

GO

GO:0042578 GO:0046856 GO:0016021 GO:0003676 GO:0048488 GO:0004439 GO:0046855 GO:0098793 GO:0061174 GO:0150007 GO:0050803 GO:0150008 GO:0044754 GO:0012506 GO:0048790 GO:2000786 GO:0052659 GO:0043812 GO:0004438 GO:0005776 GO:0052658 GO:0043195 GO:0004445 GO:0034595 GO:0000166 GO:0006412 GO:0005852 GO:0006446 GO:0043022 GO:0005488 GO:0003707 GO:0051537

PANTHER

PTHR11200:SF158

Length:

1043

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.464080000000001

Exp number, first 60 AAs:

0.00524

Total prob of N-in:

0.00927

outside

1 - 1043

Pi

0.4223

Theta

2.188679

Tajima's D

-1.82647

CLR

0

CSRT

0.0187990600469977

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics