Gene

KWMTBOMO07367  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010604

Annotation

ribosomal_protein_L40_[Euphydryas_aurinia]

Location

Bomo_Chr12(-):11382106-11382979      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.317

CDS

ATGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCCGACACTATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAACATCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGGTACAATTGAACCTTCCCTTCGCATTCTCGCCATGAAGTATAACTGTGAGAAAATGATTTGCCGTAAATGCTATGCCCGTCTTCATCCTCGTGCTACCAACTGTCGCAAGACAAAGTGCGGACACACTAACAATCTGAGACCCAAAAAGAAGATCAAGGATTAA

Protein

MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRPKKKIKD

Uniprot

E3UUV6   Q9XXZ4   E7DZ55   I4DMN3   A0A0B5L5W5   I4DIU3   + More
A0A0K8T0Y5   D9ZFI2   A0A1E1W0H4   Q962S3   A0A3G1T1L1   A0A212F3G3   A0A2A4JQD9   D1LYI9   Q8IS65   Q0PQY0   Q2V8D8   K9M0T0   G0ZEH3   A0A0P6IGW9   A0A1Y1LWY1   Q4GX83   J3JUI1   Q4GX79   Q4GX82   Q4GX81   A0A1B6D421   A0A164N724   A0A0P5KYA6   D2A1G0   Q4GX80   Q4GX78   E0W391   N0BGS0   A0A195D2C9   A0A151IVH7   A0A1W6EWC6   A0A154PSD8   A0A0L7RDX4   F4W5F4   A0A195BTN7   A0A2A3EHL9   A0A2J7PQ48   A0A0M8ZVQ6   R4UW14   A0A088AN20   A0A067QXB3   A0A195FT85   E2BFI9   E1ZX35   A0A151WQR7   K7JC19   A0A158NYW4   A0A026X3M9   A0A0T6AYF5   B0Z9N9   A0A0X7YG08   H2LX76   A0A3P9MBH7   B4MDC8   A0A3F2Z1Z9   W8BCX2   A0A1B0FP56   A0A1I8M438   B4KFP9   A0A1A9XH84   A0A1W4XWD7   C6ZQZ8   A0A3F2YVY4   A0A3B0JAT0   A0A1A9UMV8   T1D5B9   T1E7V7   A0A1B0B5R6   Q29NP1   A0A1Q3FUD8   B4GQQ7   U5EX98   Q95NR0   A0A240PP72   A0A1I8NRI3   B3MLU8   A0A240PN80   B4JD38   B3N3Q0   A0A0A1WXV4   A0A2M3ZFI1   A0A1L8EHW7   A0A3F2Z0Y6   A0A1A9ZJ33   A0A2M3ZZF2   A0A1Y9GKL0   A0A1Y9G8A6   A0A2M4C3B1   A0A1A9W0F3   A0A1W4UQN2   B4NRW4   B4N0N3   A0A182MAZ1   A0A182SV28  

Pubmed

19121390    22651552    26354079    20688075    14668217    22118469    + More
23973721    28004739    22516182    18362917    19820115    20566863    21719571    24845553    20798317    20075255    21347285    24508170    30249741    18222945    17554307    17994087    24495485    25315136    20496585    24330624    15632085    25830018    22936249    18057021   

EMBL

HM590396    ADP21465.1    BABH01033515    AF308163    AY769312    DQ125484    + More
AB021972    AAG29540.1    AAV34854.1    ABA18644.1    BAA76674.1    HQ424758    ADT80702.1    AK402551    BAM19173.1    KM923794    AJG43853.1    AK401211    KQ459603    BAM17833.1    KPI92689.1    GBRD01006805    JAG59016.1    GU983913    ADL38964.1    GDQN01010612    JAT80442.1    AF400203    AAK92175.1    MG992438    AXY94876.1    AGBW02010564    OWR48276.1    NWSH01000899    PCG73632.1    GU084263    ACY95296.1    AY149883    AAN15743.1    DQ780001    ABG77272.1    DQ286557    ABB91375.1    JX163118    AFQ31626.1    JF265051    AEL28882.1    GDIQ01004651    JAN90086.1    GEZM01047479    JAV76830.1    AM049140    CAJ17440.1    BT126895    AEE61857.1    AM049144    CAJ17444.1    AM049141    CAJ17441.1    AM049142    CAJ17442.1    GEDC01016839    JAS20459.1    LRGB01002866    KZS05701.1    GDIQ01203426    JAK48299.1    KQ971338    EFA02110.1    AM049143    CAJ17443.1    AM049145    CAJ17445.1    DS235882    EEB20097.1    KC460344    AGK63076.1    KQ977004    KYN06534.1    KQ980899    KYN11710.1    KY563596    ARK20005.1    KQ435102    KZC14667.1    KQ414613    KOC69019.1    GL887645    EGI70604.1    KQ976407    KYM91466.1    KZ288245    PBC31198.1    NEVH01022640    PNF18455.1    KQ435824    KOX72105.1    KC571912    AGM32411.1    KK852904    KDR14023.1    KQ981276    KYN43636.1    GL448037    EFN85511.1    GL434992    EFN74251.1    KQ982821    KYQ50148.1    KK107013    QOIP01000003    EZA62882.1    RLU24525.1    LJIG01022504    KRT80223.1    EU302560    ABZ04249.1    KC507364    AHB12487.1    CH940661    EDW71189.1    GAMC01007430    JAB99125.1    CCAG010011312    CH933807    EDW11014.1    EZ114949    ACU31002.1    OUUW01000004    SPP79095.1    GALA01000588    JAA94264.1    GAMD01002712    JAA98878.1    JXJN01008839    CH379059    EAL34177.1    GFDL01003973    JAV31072.1    CH479187    EDW39929.1    GANO01001045    JAB58826.1    AJ415521    CAC94469.1    CH902620    EDV30819.1    CH916368    EDW04282.1    CH954177    EDV57709.1    GBXI01011054    JAD03238.1    GGFM01006429    MBW27180.1    GFDG01000492    JAV18307.1    GGFK01000623    MBW33944.1    APCN01002500    GGFJ01010676    MBW59817.1    CH981594    CM002910    EDX15342.1    KMY88035.1    CH963920    EDW77646.1    KRF98716.1    AXCM01007613   

Proteomes

UP000005204    UP000053268    UP000007151    UP000218220    UP000076858    UP000007266    + More
UP000009046    UP000078542    UP000078492    UP000076502    UP000053825    UP000007755    UP000078540    UP000242457    UP000235965    UP000053105    UP000005203    UP000027135    UP000078541    UP000008237    UP000000311    UP000075809    UP000002358    UP000005205    UP000053097    UP000279307    UP000001038    UP000265180    UP000008792    UP000076407    UP000092444    UP000095301    UP000009192    UP000092443    UP000192223    UP000075884    UP000268350    UP000078200    UP000092460    UP000001819    UP000008744    UP000075881    UP000095300    UP000007801    UP000075885    UP000001070    UP000008711    UP000075920    UP000092445    UP000075840    UP000069272    UP000091820    UP000192221    UP000000304    UP000007798    UP000075883    UP000075901   

PRIDE

Q9XXZ4    A0A088AN20   

Pfam

PF01020   Ribosomal_L40e        + More
PF00240   ubiquitin

Interpro

IPR019956   Ubiquitin        + More
IPR000626   Ubiquitin_dom       
IPR019954   Ubiquitin_CS       
IPR038587   L40e_sf       
IPR011332   Ribosomal_zn-bd       
IPR029071   Ubiquitin-like_domsf       
IPR001975   Ribosomal_L40e       

SUPFAM

SSF57829   SSF57829        + More
SSF54236   SSF54236       

Gene 3D

2.20.28.70    

ProteinModelPortal

E3UUV6   Q9XXZ4   E7DZ55   I4DMN3   A0A0B5L5W5   I4DIU3   + More
A0A0K8T0Y5   D9ZFI2   A0A1E1W0H4   Q962S3   A0A3G1T1L1   A0A212F3G3   A0A2A4JQD9   D1LYI9   Q8IS65   Q0PQY0   Q2V8D8   K9M0T0   G0ZEH3   A0A0P6IGW9   A0A1Y1LWY1   Q4GX83   J3JUI1   Q4GX79   Q4GX82   Q4GX81   A0A1B6D421   A0A164N724   A0A0P5KYA6   D2A1G0   Q4GX80   Q4GX78   E0W391   N0BGS0   A0A195D2C9   A0A151IVH7   A0A1W6EWC6   A0A154PSD8   A0A0L7RDX4   F4W5F4   A0A195BTN7   A0A2A3EHL9   A0A2J7PQ48   A0A0M8ZVQ6   R4UW14   A0A088AN20   A0A067QXB3   A0A195FT85   E2BFI9   E1ZX35   A0A151WQR7   K7JC19   A0A158NYW4   A0A026X3M9   A0A0T6AYF5   B0Z9N9   A0A0X7YG08   H2LX76   A0A3P9MBH7   B4MDC8   A0A3F2Z1Z9   W8BCX2   A0A1B0FP56   A0A1I8M438   B4KFP9   A0A1A9XH84   A0A1W4XWD7   C6ZQZ8   A0A3F2YVY4   A0A3B0JAT0   A0A1A9UMV8   T1D5B9   T1E7V7   A0A1B0B5R6   Q29NP1   A0A1Q3FUD8   B4GQQ7   U5EX98   Q95NR0   A0A240PP72   A0A1I8NRI3   B3MLU8   A0A240PN80   B4JD38   B3N3Q0   A0A0A1WXV4   A0A2M3ZFI1   A0A1L8EHW7   A0A3F2Z0Y6   A0A1A9ZJ33   A0A2M3ZZF2   A0A1Y9GKL0   A0A1Y9G8A6   A0A2M4C3B1   A0A1A9W0F3   A0A1W4UQN2   B4NRW4   B4N0N3   A0A182MAZ1   A0A182SV28  

PDB

6IP8     E-value=2.73685e-59,     Score=572

KEGG

692779    K02927 large subunit ribosomal protein L40e | (RefSeq) ubiquitin/ribosomal protein L40 fusion protei

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0016567   GO:0031625   GO:0005634   GO:0005737   GO:0022627   GO:0031386   GO:0019941   GO:0022625   GO:0005515   GO:0005852   GO:0006446   GO:0043022   GO:0005488   GO:0003707   GO:0051537  

Length:

129

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00159

Exp number, first 60 AAs:

0

Total prob of N-in:

0.24080

outside

1  -  129

 

 

Pi

5.346429

Theta

8.052532

Tajima's D

-0.878621

CLR

0

CSRT

0.16269186540673

Interpretation

Uncertain