Gene

KWMTBOMO07352  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010676

Annotation

PREDICTED:_stearoyl-CoA_desaturase_5_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr12(+):11044368-11050942      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.604

CDS

ATGGCCTTCCAAAATCATATATATGAATGGGTACGCGATCATAGAGTTCATCATAAGTTCACGGAGACTGACGCTGACCCTCACAACGCTAAACGAGGATTTTTCTTTTCTCACATGGGCTGGTTGATGGTGAGGAAGCACAAAGACGTCTTCGAAAAGGGTGCCGCTGTTGATATGTCGGATTTGGAAAAGGACCCGATCGTAATGTTCCAAAAAAAAACATATCTATTCGTGATGCCAATCCTATGCTTCTTATTGCCATTGTACATTCCCGTTTATTTTTGGAACGAAAATCCATGGTCCTCGTGGTATGTCGCATCAATGTTTAGATACACGATCAGTCTTCACTTCACGTGGCTGGTTAACTCCGCCGCACACCTCTGGGGGAACAAGCCATATGATCAATACATAGGAGCAACTGATAACAAAACTGTGGCGATCTGTGCTTTAGGCGAGGGTTGGCACAACTATCATCACGTATTTCCCTGGGACTACAAAGCGGCCGAGCTCGGAGACTACAGCACCAATTTATCAACCGCCTTAATTGACATCGCTGCAAAATACGGCTTAGCTTACGATTTGAAGACGGTATCTGAAAAGATGATAAGGAATCGCATTAATCGAACAGGCGACGGTACCCATCCTTGGGCGAAACAGAAGGCAGAGTTGGAGGAAGATCATCATCATCTAGAAAACCCTATATGGGGCTGGGGCGATAAAGACATGTCAGACGATGATAAGAAATTGGCGGAAATTGTTCACAAAAAGAATGACTAG

Protein

MAFQNHIYEWVRDHRVHHKFTETDADPHNAKRGFFFSHMGWLMVRKHKDVFEKGAAVDMSDLEKDPIVMFQKKTYLFVMPILCFLLPLYIPVYFWNENPWSSWYVASMFRYTISLHFTWLVNSAAHLWGNKPYDQYIGATDNKTVAICALGEGWHNYHHVFPWDYKAAELGDYSTNLSTALIDIAAKYGLAYDLKTVSEKMIRNRINRTGDGTHPWAKQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIVHKKND

Cofactor

Fe cation

Similarity

Belongs to the fatty acid desaturase type 1 family.

Uniprot

H9JMC3   A0A212F2M1   A0A194R480   A0A068FRE6   A0A194PH02   B7SB79   + More
Q8MZZ5   A0A0U2F3D3   A0A0U2F3C0   I7AHL6   A0A2H1VBX7   A0A2A4JFV9   T1RTG7   A0A1L8D6C3   T1RTD2   S4PN29   A0A0M3LAH8   B6CBS4   A0A0L7LIJ1   Q6A4M8   I4DS07   D8UU48   A0A2P8ZGJ8   A0A1B0DIJ1   A0A2J7PNJ8   A0A151JS75   A0A154PDD1   A0A1B6BZA0   K7J0U9   A0A232F3U6   A0A1B6DXZ2   Q4PP96   E2C1U4   A0A0J7NME9   A0A2J7Q458   A0A1S4EHT5   A0A2P8XTS3   E2AX12   F4W5A9   A0A0C9QWJ2   T1HR83   Q173B1   A0A0V0GDS0   A0A0P6J0V5   A0A195FTD4   A0A067QT59   A0A1W4X6D0   A0A310SQM5   A0A151X2W9   A0A195CXM1   Q5XXT0   A0A1S4EFC2   A0A1S3D6B4   A0A069DSW7   A0A023ERW8   E0VE45   A0A1S3D7T3   A0A026W4L1   Q9BH41   A0A1B6GKP5   A0A182TJZ6   A0A195BTK0   A0A1L2BNU6   Q6PPH9   A0A023ERW2   A0A182LZE7   A0A182K1K4   D7EJN1   A0A096XDC8   J9K131   A0A0L7RGE5   A0A182KWY6   A0A2H8TMD9   T1RLC5   A0A158NYT0   A0A182HJS3   A0A182XK65   A0A067RHH4   A0A182T7Z9   A0A182V4X1   A0A1B6ER20   T1RLF5   Q201V1   E0VE42   Q7QDJ5   A0A2S2PCR7   A0A3Q0JL17   A0A182PS55   A0A182W0K0   A0A2R7W9M0   A0A2A3E2X3   V9IBM6   A0A182Y4H9   A0A182QWH3   A0A2S2PLC4   A0A088AI91   A0A182R814   A0A182IPM3   W5JSC3   A0A1I8QDS2  

Pubmed

19121390    22118469    26354079    26385554    20403437    12524345    + More
12770579    28986331    24500170    23622113    18831750    26227816    15527989    22651552    29403074    20075255    28648823    20798317    21719571    17510324    26999592    24845553    26334808    24945155    20566863    24508170    30249741    12429125    18362917    19820115    24880119    20966253    23727612    21347285    12364791    14747013    17210077    25244985    20920257    23761445   

EMBL

BABH01033480    AGBW02010723    OWR47976.1    KQ460845    KPJ12045.1    KJ622057    + More
AID66665.1    KQ459603    KPI92676.1    EU152405    ABX71814.1    AF482905    AAM28480.2    KP008116    MF687524    AKU76403.1    ATJ44450.1    KP008123    MF687584    AKU76410.1    ATJ44510.1    JX126484    AFO38465.1    ODYU01001713    SOQ38301.1    NWSH01001630    PCG70656.1    JX531661    AGO45846.1    GEYN01000131    JAV01998.1    JX531655    AGO45840.1    GAIX01003235    JAA89325.1    KM366792    AIM40222.1    EU152334    ABX71629.1    JTDY01000964    KOB75262.1    AF518008    AF518009    AAQ12887.1    AAQ12888.1    AK405358    BAM20697.1    GQ130306    ADC53487.1    PYGN01000064    PSN55622.1    AJVK01062643    NEVH01023953    PNF17920.1    KQ978543    KYN30207.1    KQ434878    KZC09843.1    GEDC01030710    JAS06588.1    NNAY01001086    OXU25189.1    GEDC01006752    JAS30546.1    DQ062217    AAY63972.1    GL452008    EFN78056.1    LBMM01003340    KMQ93645.1    NEVH01018390    PNF23355.1    PYGN01001363    PSN35395.1    GL443495    EFN62032.1    GL887645    EGI70559.1    GBYB01008109    JAG77876.1    ACPB03003193    CH477428    EAT41117.1    GECL01000276    JAP05848.1    GDUN01000309    JAN95610.1    KQ981276    KYN43681.1    KK853306    KDR08705.1    KQ761655    OAD57203.1    KQ982566    KYQ54761.1    KQ977220    KYN04894.1    AY725782    AAU95195.1    GBGD01001849    JAC87040.1    GAPW01002159    JAC11439.1    DS235088    EEB11651.1    KK107419    QOIP01000003    EZA51020.1    RLU25069.1    AF338465    AF338466    AAK25796.1    AAK25797.1    GECZ01006781    JAS62988.1    KQ976407    KYM91399.1    KU296958    ALT55114.1    AY588067    AAT01079.1    GAPW01001631    JAC11967.1    AXCM01000236    KQ971422    EFA12798.2    KF576670    AHH30811.1    ABLF02029597    KQ414596    KOC69925.1    GFXV01003521    MBW15326.1    KC437331    AGK82081.1    ADTU01004257    APCN01002208    KK852680    KDR18593.1    GECZ01029586    JAS40183.1    KC437330    AGK82080.1    ABLF02009131    DQ413235    AK341785    ABD72703.1    BAH72082.1    EEB11648.1    AAAB01008851    EAA07365.5    GGMR01014628    MBY27247.1    KK854500    PTY16384.1    KZ288431    PBC25824.1    JR037914    AEY58032.1    AXCN02000306    AXCN02000307    GGMR01017596    MBY30215.1    ADMH02000313    ETN67016.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000218220    UP000037510    + More
UP000245037    UP000092462    UP000235965    UP000078492    UP000076502    UP000002358    UP000215335    UP000008237    UP000036403    UP000079169    UP000000311    UP000007755    UP000015103    UP000008820    UP000078541    UP000027135    UP000192223    UP000075809    UP000078542    UP000009046    UP000053097    UP000279307    UP000075902    UP000078540    UP000075883    UP000075881    UP000007266    UP000007819    UP000053825    UP000075882    UP000005205    UP000075840    UP000076407    UP000075901    UP000075903    UP000007062    UP000075885    UP000075920    UP000242457    UP000076408    UP000075886    UP000005203    UP000075900    UP000075880    UP000000673    UP000095300   

PRIDE

H9JMC3   

Pfam

PF00487   FA_desaturase

Interpro

IPR015876   Acyl-CoA_DS        + More
IPR005804   FA_desaturase_dom       
IPR009160   Acyl-CoA_deSatase_haem/ster-bd       

CDD

cd03505  Delta9-FADS-like

ProteinModelPortal

H9JMC3   A0A212F2M1   A0A194R480   A0A068FRE6   A0A194PH02   B7SB79   + More
Q8MZZ5   A0A0U2F3D3   A0A0U2F3C0   I7AHL6   A0A2H1VBX7   A0A2A4JFV9   T1RTG7   A0A1L8D6C3   T1RTD2   S4PN29   A0A0M3LAH8   B6CBS4   A0A0L7LIJ1   Q6A4M8   I4DS07   D8UU48   A0A2P8ZGJ8   A0A1B0DIJ1   A0A2J7PNJ8   A0A151JS75   A0A154PDD1   A0A1B6BZA0   K7J0U9   A0A232F3U6   A0A1B6DXZ2   Q4PP96   E2C1U4   A0A0J7NME9   A0A2J7Q458   A0A1S4EHT5   A0A2P8XTS3   E2AX12   F4W5A9   A0A0C9QWJ2   T1HR83   Q173B1   A0A0V0GDS0   A0A0P6J0V5   A0A195FTD4   A0A067QT59   A0A1W4X6D0   A0A310SQM5   A0A151X2W9   A0A195CXM1   Q5XXT0   A0A1S4EFC2   A0A1S3D6B4   A0A069DSW7   A0A023ERW8   E0VE45   A0A1S3D7T3   A0A026W4L1   Q9BH41   A0A1B6GKP5   A0A182TJZ6   A0A195BTK0   A0A1L2BNU6   Q6PPH9   A0A023ERW2   A0A182LZE7   A0A182K1K4   D7EJN1   A0A096XDC8   J9K131   A0A0L7RGE5   A0A182KWY6   A0A2H8TMD9   T1RLC5   A0A158NYT0   A0A182HJS3   A0A182XK65   A0A067RHH4   A0A182T7Z9   A0A182V4X1   A0A1B6ER20   T1RLF5   Q201V1   E0VE42   Q7QDJ5   A0A2S2PCR7   A0A3Q0JL17   A0A182PS55   A0A182W0K0   A0A2R7W9M0   A0A2A3E2X3   V9IBM6   A0A182Y4H9   A0A182QWH3   A0A2S2PLC4   A0A088AI91   A0A182R814   A0A182IPM3   W5JSC3   A0A1I8QDS2  

PDB

4YMK     E-value=1.32724e-66,     Score=640

KEGG

101743452    K00507 stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] | (RefSeq) stearoyl-CoA desaturas

PATHWAY

01040    Biosynthesis of unsaturated fatty acids - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0006633   GO:0016717   GO:0016021   GO:0006636   GO:0004768   GO:0005789   GO:0005506   GO:0016491   GO:0006629   GO:0001607   GO:0005852   GO:0006446   GO:0043022   GO:0005488   GO:0003707   GO:0051537   GO:0055114  

PANTHER

PTHR11351  

Length:

258

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

40.41569

Exp number, first 60 AAs:

0.00201

Total prob of N-in:

0.94976

inside

1  -  73

TMhelix

74  -  96

outside

97  -  105

TMhelix

106  -  128

inside

129  -  258

 

 

Pi

4.591881

Theta

7.159303

Tajima's D

0.317802

CLR

11.607398

CSRT

0.486575671216439

Interpretation

Uncertain