Gene

KWMTBOMO07349

Pre Gene Modal

BGIBMGA010613

Annotation

putative_desaturase_des12?_partial_[Spodoptera_litura]

Location

Bomo_Chr12(-):10895509-10902767      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.63

CDS

ATGACGACCGGAGCTCATCGACTTTGGGCGCACCGTACTTACAAAGCAAGCACAGAATTGCGCATTGTTCTAATGCTGCTTCAGACTTTAGCTGGTGTTGGCCCTATTTACAACTGGGTTAGACATCACAGACTACATCACGCACACTTTGCTACAGAGAATGATCCATTTGACTACAATCAAGGTTTCGCATACGCCCACATCTTCACGCGAATGAGGAAACTTAGTCCGTATCAGGAAAAATTAAAAGAGTCCATCGACATGTCGGATCTAGAAAATGATTCTGTTGTTATGTTTCAAAAGACGCTATACTGGTTTATGTATGCAACGCTGTTCCTACTGTTGCCCCTGAACGCACCACTCGAGTATTGGGAGGACTCAGTATTAAGTTCCGTCTTTGTTATTGGCTTTCTTCGATACTTCATCTTACTACACGCGTCTTGGTTGATAGAGAGCGCTATCTGCGTTTGGGGATTGAAACCTGGAGAAAAATCACCCCCTGATTCTAATTCTGTGTTCATAATAACGCGAACATTCTGGCCTCACTACCACTATTTAATACCCTATGATTACAAATCCGGAGAATACGGTACCTATGACTCCGGTTGTTCGAGTGCTTTCATTAGAGTTTGGGCAGCACTCGGTATCGCCACAGGTCTTCGTACAGTGGAGACCAATACAATACAGAAGGCTTTGGCTGAGATGGCAAAAACCAAAAAACCTCTTCAAATATGCCTAGAAAATGCCCTAAAAGATCAAAGTTTGTCAGATCAGCATTATCTCAAACGAGAATAA

Protein

MTTGAHRLWAHRTYKASTELRIVLMLLQTLAGVGPIYNWVRHHRLHHAHFATENDPFDYNQGFAYAHIFTRMRKLSPYQEKLKESIDMSDLENDSVVMFQKTLYWFMYATLFLLLPLNAPLEYWEDSVLSSVFVIGFLRYFILLHASWLIESAICVWGLKPGEKSPPDSNSVFIITRTFWPHYHYLIPYDYKSGEYGTYDSGCSSAFIRVWAALGIATGLRTVETNTIQKALAEMAKTKKPLQICLENALKDQSLSDQHYLKRE

Cofactor

Fe cation

Similarity

Belongs to the fatty acid desaturase type 1 family.

Uniprot

T1RTD5   H9JM61   A0A1V0M870   A0A291P0L9   A0A291P0X2   A0A2A4JJM0   + More
A0A0P0EA57   A0A0U2F3D5   A0A2H1VUX2   A0A0M3L9C9   A0A068FRE3   A0A212EQ51   A0A194PHZ6   A0A194R3E7   A0A1L8D6P3   A0A1L8D6N2   A0A0L7L1L6   Q17EY5   A0A182LVW9   A0A023EQP9   A0A1S4F571   A0A182GEU2   W5J650   A0A182JYF4   A0A182UMY5   A0A182WRG0   A0A1Q3G5A7   A0A1B6E404   Q7QDC1   A0A084W6J1   A0A336M291   A0A336M071   A0A182W0A1   A0A182HUC0   A0A096XDB8   A0A182IXB6   A0A182FAQ5   A0A182SCW4   D7EIY7   A0A067R818   A0A182N6J2   A0A1I8PP80   A0A182RNM4   T1PHW9   A0A182Y4E6   W8BFR3   W8C5K7   A0A182PAC8   A0A0A1WGL7   A0A0K8UZ01   A0A2P8ZGK2   A0A0K8V658   A0A034WEH4   A0A034WCZ2   A0A182TYR8   C4WWI9   A0A1B6KJ08   A0A1B6I3Q6   A0A1L8DY59   A0A1B6GYT9   T1H7V5   J3JTM2   A0A1B6C828   K7J0V0   B4M6D7   A0A2S2PZ41   A0A1J1I4U0   E0VE43   A0A0G3YLE9   A0A2R7WDH5   B3LZD3   A0A2H8TNW0   A0A1W4W1W3   A0A2S2NXH0   A0A1A9WPD6   D3TNT7   B4GNP5   B5DXR4   A0A0M5J0D3   T1RLH2   A0A023F0M3   B4PLU1   B4JEM8   A0A1A9ZF86   B4HZN6   Q9VA93   T1RLH6   Q4V4B1   B4NGT3   A0A3B0K742   B4R1J9   F5HK89   B3P7W9   A0A0K8V387   B4K9T2   E2C1U0   A0A3B0K759   A0A1B0CEY0   A0A026W4R5  

Pubmed

24500170    19121390    28349297    28986331    26445454    26385554    + More
22118469    26354079    26227816    17510324    24945155    26483478    20920257    23761445    12364791    14747013    17210077    24438588    24880119    18362917    19820115    24845553    25315136    25244985    24495485    25830018    29403074    25348373    22516182    23537049    20075255    17994087    20566863    25702953    20353571    15632085    23727612    25474469    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20798317    24508170   

EMBL

JX531670    AGO45855.1    BABH01033468    KU755475    ARD71185.1    MF687530    + More
ATJ44456.1    MF687588    ATJ44514.1    NWSH01001345    PCG71600.1    KT261694    ALJ30234.1    KP008126    AKU76413.1    ODYU01004545    SOQ44546.1    KM366788    AIM40218.1    KJ622052    AID66660.1    AGBW02013325    OWR43606.1    KQ459603    KPI92673.1    KQ460845    KPJ12049.1    GEYN01000129    JAV02000.1    GEYN01000125    JAV02004.1    JTDY01003526    KOB69403.1    CH477278    EAT45074.1    AXCM01001395    GAPW01002173    JAC11425.1    JXUM01059125    KQ562036    KXJ76845.1    ADMH02002143    ETN58289.1    GFDL01000057    JAV34988.1    GEDC01024654    GEDC01004657    JAS12644.1    JAS32641.1    AAAB01008859    EAA07943.3    ATLV01020820    KE525308    KFB45835.1    UFQS01000350    UFQT01000350    SSX03095.1    SSX23461.1    SSX03094.1    SSX23460.1    APCN01000618    KF576676    AHH30817.1    KQ971905    EFA12397.2    KK852680    KDR18592.1    KA647468    AFP62097.1    GAMC01008993    GAMC01008989    JAB97562.1    GAMC01008991    JAB97564.1    GBXI01016647    JAC97644.1    GDHF01020551    JAI31763.1    PYGN01000064    PSN55637.1    GDHF01018224    JAI34090.1    GAKP01006402    GAKP01006401    GAKP01006400    JAC52550.1    GAKP01006403    JAC52549.1    ABLF02015065    AK342093    BAH72259.1    GEBQ01028551    JAT11426.1    GECU01026191    JAS81515.1    GFDF01002687    JAV11397.1    GECZ01002197    JAS67572.1    ACPB03020383    BT126579    KB631815    AEE61543.1    ERL86465.1    GEDC01027903    JAS09395.1    CH940652    EDW59213.1    GGMS01001441    MBY70644.1    CVRI01000039    CRK94612.1    DS235088    EEB11649.1    KM507108    AKM28432.1    KK854500    PTY16385.1    CH902617    EDV44112.1    GFXV01003143    MBW14948.1    GGMR01009310    MBY21929.1    CCAG010012086    EZ423089    ADD19365.1    CH479186    EDW39371.1    CM000070    EDY67505.1    CP012526    ALC47548.1    KC437332    AGK82082.1    GBBI01003702    JAC15010.1    CM000160    EDW99078.1    CH916369    EDV93159.1    CH480819    EDW53493.1    AE014297    AAF57021.1    KC437333    AGK82083.1    BT023007    BT023095    BT023167    AAY55423.1    AAY55511.1    AAY55583.1    CH964272    EDW84430.1    OUUW01000041    SPP89935.1    CM000364    EDX14987.1    EGK96641.1    CH954182    EDV53096.1    GDHF01019008    JAI33306.1    CH933806    EDW14557.1    GL452008    EFN78052.1    SPP89934.1    AJWK01009459    KK107419    EZA51018.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000008820    UP000075883    UP000069940    UP000249989    UP000000673    UP000075881    UP000075903    UP000076407    UP000007062    UP000030765    UP000075920    UP000075840    UP000075880    UP000069272    UP000075901    UP000007266    UP000027135    UP000075884    UP000095300    UP000075900    UP000095301    UP000076408    UP000075885    UP000245037    UP000075902    UP000007819    UP000015103    UP000030742    UP000002358    UP000008792    UP000183832    UP000009046    UP000007801    UP000192221    UP000091820    UP000092444    UP000008744    UP000001819    UP000092553    UP000002282    UP000001070    UP000092445    UP000001292    UP000000803    UP000007798    UP000268350    UP000000304    UP000008711    UP000009192    UP000008237    UP000092461    UP000053097   

PRIDE

T1RTD5    H9JM61    Q9VA93    Q4V4B1   

Pfam

PF00487   FA_desaturase        + More
PF00515   TPR_1
PF16546   SGTA_dimer
PF00085   Thioredoxin

Interpro

IPR015876   Acyl-CoA_DS        + More
IPR005804   FA_desaturase_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR001440   TPR_1       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR032374   SGTA_dimer       
IPR036249   Thioredoxin-like_sf       
IPR013766   Thioredoxin_domain       
IPR001522   FADS-1_CS       

SUPFAM

SSF48452   SSF48452        + More
SSF52833   SSF52833       

Gene 3D

1.25.40.10    

CDD

cd03505  Delta9-FADS-like

ProteinModelPortal

T1RTD5   H9JM61   A0A1V0M870   A0A291P0L9   A0A291P0X2   A0A2A4JJM0   + More
A0A0P0EA57   A0A0U2F3D5   A0A2H1VUX2   A0A0M3L9C9   A0A068FRE3   A0A212EQ51   A0A194PHZ6   A0A194R3E7   A0A1L8D6P3   A0A1L8D6N2   A0A0L7L1L6   Q17EY5   A0A182LVW9   A0A023EQP9   A0A1S4F571   A0A182GEU2   W5J650   A0A182JYF4   A0A182UMY5   A0A182WRG0   A0A1Q3G5A7   A0A1B6E404   Q7QDC1   A0A084W6J1   A0A336M291   A0A336M071   A0A182W0A1   A0A182HUC0   A0A096XDB8   A0A182IXB6   A0A182FAQ5   A0A182SCW4   D7EIY7   A0A067R818   A0A182N6J2   A0A1I8PP80   A0A182RNM4   T1PHW9   A0A182Y4E6   W8BFR3   W8C5K7   A0A182PAC8   A0A0A1WGL7   A0A0K8UZ01   A0A2P8ZGK2   A0A0K8V658   A0A034WEH4   A0A034WCZ2   A0A182TYR8   C4WWI9   A0A1B6KJ08   A0A1B6I3Q6   A0A1L8DY59   A0A1B6GYT9   T1H7V5   J3JTM2   A0A1B6C828   K7J0V0   B4M6D7   A0A2S2PZ41   A0A1J1I4U0   E0VE43   A0A0G3YLE9   A0A2R7WDH5   B3LZD3   A0A2H8TNW0   A0A1W4W1W3   A0A2S2NXH0   A0A1A9WPD6   D3TNT7   B4GNP5   B5DXR4   A0A0M5J0D3   T1RLH2   A0A023F0M3   B4PLU1   B4JEM8   A0A1A9ZF86   B4HZN6   Q9VA93   T1RLH6   Q4V4B1   B4NGT3   A0A3B0K742   B4R1J9   F5HK89   B3P7W9   A0A0K8V387   B4K9T2   E2C1U0   A0A3B0K759   A0A1B0CEY0   A0A026W4R5  

PDB

4YMK     E-value=9.73535e-32,     Score=340

KEGG

101743171    K00507 stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] | (RefSeq) BmorPDSN; acyl-CoA Del

PATHWAY

01040    Biosynthesis of unsaturated fatty acids - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016717   GO:0006633   GO:0006636   GO:0005506   GO:0005789   GO:0005623   GO:0045454   GO:0004768   GO:0006629   GO:0005622   GO:0005737   GO:0005852   GO:0006446   GO:0043022   GO:0005488   GO:0003707   GO:0051537   GO:0055114  

PANTHER

PTHR11351  

Length:

264

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

66.36642

Exp number, first 60 AAs:

20.12503

Total prob of N-in:

0.91721

POSSIBLE N-term signal

sequence

inside

1  -  19

TMhelix

20  -  39

outside

40  -  101

TMhelix

102  -  121

inside

122  -  127

TMhelix

128  -  150

outside

151  -  264

 

 

Pi

22.465924

Theta

23.125274

Tajima's D

-0.884159

CLR

0.02414

CSRT

0.15949202539873

Interpretation

Uncertain