SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07343
Pre Gene Modal
BGIBMGA010674
Annotation
PREDICTED:_uncharacterized_protein_LOC106137395_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.402
 

Sequence

CDS
ATGATCATGGAACCGTCAATATCATCAGATGATAGTTGCGATTCAGAAACGCGAAGTATGAAAAAACAACTTACAGAATTTGGATTTGAAGAAGAAAATTTGAGTAAATCCGAAATGAGCGATATTTTAAAAGCTCTAAGGAATTCCGAATGTAGTGTAGAAGAGGAACTAACAAGACAAACAATCAATGAGACTGTTTCTGTTACTACTAAGAGTTTGAAAAGACGTAGCATAGATGTAGAAGATAGAAGAATGCCCTGGAGTATCTTTCCTGAGCAATTGACTCAGACAGAAAAAGCTCAAACACTAGCGATTTATATAAAGTTAATGTCCATAAATAATTATCATCAAGCTAGAAAATCTGGAAATTTTGCAACATGGCCCCCTCCTATACAAATTATTGAGGAATCAAGAGTTCAACCCATAAGATCGACACGGAGTGGCAGATCAGTACCAATATATGCAGATTTTGATGATGATTCTTCAGATTTGGACTTTGTTATTACTAAAACAAAGAAGAGAAAAGTATCAAACAGCGAACATAATGCCAATGAAGGAGTGTACTCAAATAAAGTAGTTAGTCTCAAAAGAAAACCATCAAAGGATGAAGATGTTAGACCATCTAAAGAAGCTAAAGTAAACAAAATTGACAAAGAAATAATTAGCATAGGCAAAAATAAAAGGGATTTGTTTTCATTGATTGAAGACTGA
Protein
MIMEPSISSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEELTRQTINETVSVTTKSLKRRSIDVEDRRMPWSIFPEQLTQTEKAQTLAIYIKLMSINNYHQARKSGNFATWPPPIQIIEESRVQPIRSTRSGRSVPIYADFDDDSSDLDFVITKTKKRKVSNSEHNANEGVYSNKVVSLKRKPSKDEDVRPSKEAKVNKIDKEIISIGKNKRDLFSLIED

Summary

Pfam
PF09336   Vps4_C
Interpro
IPR002048   EF_hand_dom        + More
IPR015415   Vps4_C       

Ontologies

Topology

Length:
236
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02236
outside
1  -  236
 
 

Population Genetic Test Statistics

Pi
13.318493
Theta
11.968945
Tajima's D
0.419297
CLR
0.131044
CSRT
0.501124943752812
Interpretation
Uncertain
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