Gene

KWMTBOMO07341

Pre Gene Modal

BGIBMGA010615

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_TRIM9_[Bombyx_mori]

Location

Bomo_Chr12(-):10843838-10851737      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.113

CDS

ATGTATGGGGGAAGCGACGCGCTGGGCTGGGCGATGTACATCGACGGGTCGCGGTCGTGGTTCGTGCACGGCGGCGCGCACGGCGGGCGCACTGCGGGCGGCGTGCGGTGCGGCTCCACTGTGGGCGTGCTGCTCGACCTCACGCGCGGCACGCTGCGCTTCACCGTCGACGACCATCCACAGGGAGACATCGCATTCACCGGACTGCGCGGCGCCTTCTACCCCGCGGTGTCGCTGAACCGCGGCGTGGCCGTGACGCTGCAGCCGGGCCTGCCCCCGCCCGAGCGGCTCCTCTCGCAGCTCGCCGCCGAGTGA

Protein

MYGGSDALGWAMYIDGSRSWFVHGGAHGGRTAGGVRCGSTVGVLLDLTRGTLRFTVDDHPQGDIAFTGLRGAFYPAVSLNRGVAVTLQPGLPPPERLLSQLAAE

Uniprot

H9JM63   A0A2A4IYI0   A0A3S2NP32   A0A194PIX3   A0A2H1W946   A0A212EQ28   + More
T1GHP6   A0A1Y1LQ28   J9KHA9   A0A0T6AZM6   A0A0S7LZL7   A0A2S2PJQ0   N6UKU4   A0A2J7RCV0   A0A0J7L1K9   A0A3Q2W2I5   A0A3P8NFB3   A0A3P9C2S2   A0A3Q4GX86   A0A3Q3C6V0   A0A3P9C351   U4UFZ2   I3IVQ7   E9IYR0   A0A1V4L0U4   A0A1A8DYZ3   A0A3Q2U4H6   U3J9L8   A0A315W2A9   N6UD32   A0A3Q0RK30   A0A3Q2U2G8   A0A1B6LJZ6   A0A1B6H5K3   G3VY51   K7FJ86   A0A151N3X0   A0A3Q1BHT2   A0A3P8SQW8   A0A2I4D4U6   A0A3B5B3J6   A0A1V4L047   A0A3Q3KDG1   A0A3B3Y5R9   A0A096MGZ7   A0A3B3UEP0   A0A1V4L1B7   A0A3Q1CTB3   A0A218UHY1   A0A1V4L048   D2A382   A0A226NZD0   A0A0P5LV64   A0A3Q0GM22   A0A096M957   A0A3Q3KNT5   A0A3Q2U357   A0A2J7RCW0   A0A151N3D8   A0A151N3G8   A0A3Q3KNU9   A0A0P5PIP7   A0A0C9QPI8   A0A0N8DWE8   A0A2A3EF95   A0A151N3C3   A0A151N3B6   A0A0P6D5E0   A0A336MBB9   A0A182R435   R7UNP1   A0A3B3CVL4   A0A336KN21   A0A0P5GT20   A0A3P9PV59   A0A0P5PUI7   A0A2I0LSJ9   A0A0P6IG38   A0A164Z4Q7   A0A0P5WD37   A0A3B3HIZ0   A0A3P9IP89   A0A139WIX3   A0A3Q2Y7Z0   A0A151X2Y1   A0A0P6B3S6   A0A3B3E0W2   A0A3S2M0J9   A0A3B4FMQ3   A0A3M0JBP4   A0A3B3I2U2   A0A3P9IP61   A0A182GS35   Q17HK6   A0A0P5LWT1   A0A0P7VBE7   E2BTA3   A0A1J1HGM8   A0A3P8YV93   A0A1A8DGY2  

Pubmed

19121390    26354079    22118469    28004739    23537049    25186727    + More
21282665    15592404    23749191    29703783    21709235    17381049    22293439    18362917    19820115    24621616    23254933    29451363    23371554    17554307    26483478    17510324    20798317    25069045   

EMBL

BABH01033460    BABH01033461    BABH01033462    BABH01033463    NWSH01004597    PCG64875.1    + More
RSAL01000020    RVE52674.1    KQ459603    KPI92669.1    ODYU01007045    SOQ49466.1    AGBW02013325    OWR43602.1    CAQQ02096424    GEZM01051298    GEZM01051297    GEZM01051296    GEZM01051295    GEZM01051294    GEZM01051293    GEZM01051292    GEZM01051291    GEZM01051290    GEZM01051289    GEZM01051288    GEZM01051287    JAV75051.1    ABLF02005505    ABLF02005506    LJIG01016414    KRT80672.1    GBYX01132211    GBYX01132209    JAO94992.1    GGMR01016995    MBY29614.1    APGK01013856    APGK01014061    KB739188    KB739129    ENN82346.1    ENN82370.1    NEVH01005883    PNF38657.1    LBMM01001301    KMQ96551.1    KB632337    ERL92874.1    AERX01008752    AERX01008753    GL767043    EFZ14280.1    LSYS01000634    OPJ90018.1    HAEA01009534    SBQ38014.1    AADN05000303    ADON01057830    ADON01057831    ADON01057832    ADON01057833    ADON01057834    ADON01057835    ADON01057836    ADON01057837    ADON01057838    ADON01057839    NHOQ01000541    PWA29801.1    APGK01033323    APGK01033324    APGK01033325    APGK01033326    KB740870    ENN78546.1    GEBQ01015962    JAT24015.1    GECU01037735    JAS69971.1    AEFK01020733    AGCU01041050    AGCU01041051    AGCU01041052    AGCU01041053    AGCU01041054    AGCU01041055    AGCU01041056    AGCU01041057    AGCU01041058    AGCU01041059    AKHW03004091    KYO31325.1    OPJ90015.1    AYCK01009017    OPJ90017.1    MUZQ01000302    OWK53181.1    OPJ90016.1    KQ971338    EFA01948.1    AWGT02000251    OXB72818.1    GDIQ01167695    JAK84030.1    PNF38658.1    KYO31321.1    KYO31322.1    GDIQ01130365    JAL21361.1    GBYB01005534    JAG75301.1    GDIQ01085284    JAN09453.1    KZ288269    PBC29952.1    KYO31324.1    KYO31323.1    GDIQ01083689    JAN11048.1    UFQS01000658    UFQT01000658    SSX05860.1    SSX26219.1    AMQN01006948    AMQN01006949    KB299620    ELU07718.1    SSX05859.1    SSX26218.1    GDIQ01243032    JAK08693.1    GDIQ01123072    JAL28654.1    AKCR02000112    PKK20398.1    GDIQ01004979    JAN89758.1    LRGB01000781    KZS15938.1    GDIP01088595    JAM15120.1    KYB27879.1    KQ982566    KYQ54743.1    GDIP01020812    JAM82903.1    CM012458    RVE57629.1    QRBI01000152    RMB98521.1    JXUM01017111    JXUM01017112    KQ560475    KXJ82223.1    CH477247    EAT46151.1    GDIQ01173058    JAK78667.1    JARO02000137    KPP79725.1    GL450384    EFN81105.1    CVRI01000001    CRK86564.1    HAEA01004233    SBQ32713.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000015102    + More
UP000007819    UP000019118    UP000235965    UP000036403    UP000264840    UP000265100    UP000265160    UP000261580    UP000030742    UP000005207    UP000190648    UP000000539    UP000016666    UP000261340    UP000007648    UP000007267    UP000050525    UP000257160    UP000265080    UP000192220    UP000261400    UP000261600    UP000261480    UP000028760    UP000261500    UP000197619    UP000007266    UP000198419    UP000189705    UP000242457    UP000075900    UP000014760    UP000261560    UP000242638    UP000053872    UP000076858    UP000001038    UP000265200    UP000264820    UP000075809    UP000261460    UP000269221    UP000069940    UP000249989    UP000008820    UP000034805    UP000008237    UP000183832    UP000265140   

PRIDE

H9JM63   

Pfam

PF00041   fn3        + More
PF00622   SPRY
PF00643   zf-B_box
PF13445   zf-RING_UBOX
PF01485   IBR
PF00097   zf-C3HC4

Interpro

IPR003877   SPRY_dom        + More
IPR017903   COS_domain       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR001870   B30.2/SPRY       
IPR036116   FN3_sf       
IPR013320   ConA-like_dom_sf       
IPR003649   Bbox_C       
IPR027370   Znf-RING_LisH       
IPR001841   Znf_RING       
IPR000315   Znf_B-box       
IPR002867   IBR_dom       
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR018957   Znf_C3HC4_RING-type       

SUPFAM

SSF49899   SSF49899        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10     3.30.40.10    

CDD

cd00063  FN3
cd00021  BBOX

ProteinModelPortal

H9JM63   A0A2A4IYI0   A0A3S2NP32   A0A194PIX3   A0A2H1W946   A0A212EQ28   + More
T1GHP6   A0A1Y1LQ28   J9KHA9   A0A0T6AZM6   A0A0S7LZL7   A0A2S2PJQ0   N6UKU4   A0A2J7RCV0   A0A0J7L1K9   A0A3Q2W2I5   A0A3P8NFB3   A0A3P9C2S2   A0A3Q4GX86   A0A3Q3C6V0   A0A3P9C351   U4UFZ2   I3IVQ7   E9IYR0   A0A1V4L0U4   A0A1A8DYZ3   A0A3Q2U4H6   U3J9L8   A0A315W2A9   N6UD32   A0A3Q0RK30   A0A3Q2U2G8   A0A1B6LJZ6   A0A1B6H5K3   G3VY51   K7FJ86   A0A151N3X0   A0A3Q1BHT2   A0A3P8SQW8   A0A2I4D4U6   A0A3B5B3J6   A0A1V4L047   A0A3Q3KDG1   A0A3B3Y5R9   A0A096MGZ7   A0A3B3UEP0   A0A1V4L1B7   A0A3Q1CTB3   A0A218UHY1   A0A1V4L048   D2A382   A0A226NZD0   A0A0P5LV64   A0A3Q0GM22   A0A096M957   A0A3Q3KNT5   A0A3Q2U357   A0A2J7RCW0   A0A151N3D8   A0A151N3G8   A0A3Q3KNU9   A0A0P5PIP7   A0A0C9QPI8   A0A0N8DWE8   A0A2A3EF95   A0A151N3C3   A0A151N3B6   A0A0P6D5E0   A0A336MBB9   A0A182R435   R7UNP1   A0A3B3CVL4   A0A336KN21   A0A0P5GT20   A0A3P9PV59   A0A0P5PUI7   A0A2I0LSJ9   A0A0P6IG38   A0A164Z4Q7   A0A0P5WD37   A0A3B3HIZ0   A0A3P9IP89   A0A139WIX3   A0A3Q2Y7Z0   A0A151X2Y1   A0A0P6B3S6   A0A3B3E0W2   A0A3S2M0J9   A0A3B4FMQ3   A0A3M0JBP4   A0A3B3I2U2   A0A3P9IP61   A0A182GS35   Q17HK6   A0A0P5LWT1   A0A0P7VBE7   E2BTA3   A0A1J1HGM8   A0A3P8YV93   A0A1A8DGY2  

KEGG

101736179    K10649 tripartite motif-containing protein 9/67 | (RefSeq) E3 ubiquitin-protein ligase TRIM9

GO

GO:0008270   GO:0046872   GO:0016874   GO:0004842   GO:0035544   GO:0043161   GO:0019904   GO:0005829   GO:0042803   GO:0030425   GO:0005515   GO:0005524   GO:0043565   GO:0005737   GO:0005852   GO:0006446   GO:0043022   GO:0005488   GO:0003707   GO:0051537  

Length:

104

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0636

Exp number, first 60 AAs:

0.05173

Total prob of N-in:

0.08477

outside

1  -  104

 

 

Pi

14.43556

Theta

16.197971

Tajima's D

-1.460908

CLR

3.874775

CSRT

0.063946802659867

Interpretation

Uncertain