Gene

KWMTBOMO07339  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010616

Annotation

WW_domain_binding_protein_4_[Bombyx_mori]

Location

Bomo_Chr12(-):10819914-10823007      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.856

CDS

ATGGATGATGAAATAAAAAAAATGGAGGCTGCTGCTATGACTGCATACATAAAAGATGTTCAGAACAATGCAGATTTAACTTCACAGAATATAAACCAAATGTTGGGGGGAGATGGAAGTAATAAAAGCAACCCAAAAATTGTGGCCAGCGAGATAGGAACCAAATCTGAACCTATTTGGCATGAAGTGAAGAATCAAGATGGTAGCTCTTATTACTGGAATACAATTACAAGTGAAACAACATGGGAACAACCTGACGAATATTTTTCAATTGTTGAACAAGAAAAGAAAAAACATAAAGAAGAGCAAGCAGAAATAAAGAAACAAAATTTAAAAAAAGAAAAACACAAGGAAGCCATTAAAGAAGTCAAAGCACACATGGCACGCGAGAAGATGAAGGAGAGAGCAGTGAAAAAGGATGAATCGGTGCTAACCAAGAGTGCAGTTGACTATGGTCCGGCTCCGCGCGCCTCAAAACCGTATGGAACATGGACAGAAATTGTTAAAGAACCAGCAAAAACCGTTGACCTTCAGCTACCGAAGACAAAAGAGTTACCTCCGCCACCAGTTGTCGTGGAACCTGAAAAGTTTCAATTCAAGGAGAAACGTGTCGAAACCCTGGGCGAAGGCCCCGTCGAGTTCAAAAAACGAAAGCTTAATAATCCAAAGCGTAACATGAGACAGAAAGTAGACGATGAGTAA

Protein

MDDEIKKMEAAAMTAYIKDVQNNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPDEYFSIVEQEKKKHKEEQAEIKKQNLKKEKHKEAIKEVKAHMAREKMKERAVKKDESVLTKSAVDYGPAPRASKPYGTWTEIVKEPAKTVDLQLPKTKELPPPPVVVEPEKFQFKEKRVETLGEGPVEFKKRKLNNPKRNMRQKVDDE

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

H9JM64   Q1HQ09   A0A3S2NYZ5   A0A1E1W4Z8   A0A2A4IY42   A0A1E1WNX1   + More
A0A2H1W8R8   A0A194R491   A0A194PH85   A0A212EQ29   T1HTX4   A0A1B6CJ28   A0A2J7R8Z2   A0A1B6G9T3   A0A067R836   A0A2P8ZFM1   A0A0K8SXU9   A0A0A9XHE0   A0A0P4VLA5   A0A1B6KJJ3   A0A0T6BHW0   A0A1Y1M3U8   J3JZI2   D6X0H6   N6UAM5   A0A0N0U4Q4   A0A1J1IJP3   U5EYC2   A0A3L8DWB5   A0A1L8DGG2   A0A310SK76   A0A1W4V320   A0A087TIZ2   A0A0L8HC29   A0A0L7RDN6   T1IPJ5   A0A336LS45   A0A0V1FG68   A0A0V1IQW9   A0A0V1IS26   A0A0V0YG19   A0A087ZYZ8   V9KW42   A0A0V1E9B4   A0A0V1E9B1   A0A0V1JIR6   A0A2A3EE09  

Pubmed

19121390    26354079    22118469    24845553    29403074    25401762    + More
26823975    27129103    28004739    22516182    18362917    19820115    23537049    30249741    24402279   

EMBL

BABH01033455    DQ443243    ABF51332.1    RSAL01000020    RVE52671.1    GDQN01009020    + More
JAT82034.1    NWSH01004597    PCG64877.1    GDQN01002325    JAT88729.1    ODYU01007045    SOQ49468.1    KQ460845    KPJ12055.1    KQ459603    KPI92667.1    AGBW02013325    OWR43600.1    ACPB03017835    GEDC01023896    JAS13402.1    NEVH01006721    PNF37300.1    GECZ01010716    JAS59053.1    KK852637    KDR19704.1    PYGN01000073    PSN55250.1    GBRD01007703    JAG58118.1    GBHO01038378    GBHO01024542    GBHO01024538    GDHC01005047    GDHC01004025    JAG05226.1    JAG19062.1    JAG19066.1    JAQ13582.1    JAQ14604.1    GDKW01003200    JAI53395.1    GEBQ01028382    GEBQ01009147    JAT11595.1    JAT30830.1    LJIG01000009    KRT86931.1    GEZM01044049    JAV78546.1    BT128664    AEE63621.1    KQ971372    EFA09571.1    APGK01042538    APGK01042539    KB741006    ENN75677.1    KQ435824    KOX72174.1    CVRI01000054    CRL00408.1    GANO01000388    JAB59483.1    QOIP01000003    RLU24727.1    GFDF01008541    JAV05543.1    KQ761768    OAD57086.1    KK115419    KFM65081.1    KQ418552    KOF86878.1    KQ414613    KOC68968.1    JH431263    UFQT01000144    SSX20826.1    JYDT01000119    KRY84259.1    JYDS01000109    KRZ25014.1    KRZ25013.1    JYDU01000016    KRX99135.1    JW870409    AFP02927.1    JYDR01000074    KRY70447.1    KRY70446.1    JYDV01000098    KRZ34453.1    KZ288269    PBC29948.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000015103    UP000235965    UP000027135    UP000245037    UP000007266    UP000019118    UP000053105    UP000183832    UP000279307    UP000192221    UP000054359    UP000053454    UP000053825    UP000054995    UP000054805    UP000054815    UP000005203    UP000054632    UP000054826    UP000242457   

PRIDE

H9JM64    Q1HQ09   

Pfam

PF06220   zf-U1        + More
PF00397   WW
PF10294   Methyltransf_16
PF01266   DAO
PF02931   Neur_chan_LBD
PF02932   Neur_chan_memb

Interpro

IPR040023   WBP4        + More
IPR001202   WW_dom       
IPR036020   WW_dom_sf       
IPR036236   Znf_C2H2_sf       
IPR013085   U1-CZ_Znf_C2H2       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR000690   Matrin/U1-C_Znf_C2H2       
IPR036188   FAD/NAD-bd_sf       
IPR025800   CaM-Lys-N-MeTrfase       
IPR006076   FAD-dep_OxRdtase       
IPR029063   SAM-dependent_MTases       
IPR019410   Methyltransf_16       
IPR006201   Neur_channel       
IPR036719   Neuro-gated_channel_TM_sf       
IPR036734   Neur_chan_lig-bd_sf       
IPR006028   GABAA/Glycine_rcpt       
IPR006202   Neur_chan_lig-bd       
IPR006029   Neurotrans-gated_channel_TM       

SUPFAM

SSF51045   SSF51045        + More
SSF57667   SSF57667       
SSF51905   SSF51905       
SSF53335   SSF53335       
SSF63712   SSF63712       
SSF90112   SSF90112       

Gene 3D

3.50.50.60     2.70.170.10    

CDD

cd00201  WW

ProteinModelPortal

H9JM64   Q1HQ09   A0A3S2NYZ5   A0A1E1W4Z8   A0A2A4IY42   A0A1E1WNX1   + More
A0A2H1W8R8   A0A194R491   A0A194PH85   A0A212EQ29   T1HTX4   A0A1B6CJ28   A0A2J7R8Z2   A0A1B6G9T3   A0A067R836   A0A2P8ZFM1   A0A0K8SXU9   A0A0A9XHE0   A0A0P4VLA5   A0A1B6KJJ3   A0A0T6BHW0   A0A1Y1M3U8   J3JZI2   D6X0H6   N6UAM5   A0A0N0U4Q4   A0A1J1IJP3   U5EYC2   A0A3L8DWB5   A0A1L8DGG2   A0A310SK76   A0A1W4V320   A0A087TIZ2   A0A0L8HC29   A0A0L7RDN6   T1IPJ5   A0A336LS45   A0A0V1FG68   A0A0V1IQW9   A0A0V1IS26   A0A0V0YG19   A0A087ZYZ8   V9KW42   A0A0V1E9B4   A0A0V1E9B1   A0A0V1JIR6   A0A2A3EE09  

PDB

6AHD     E-value=0.0157417,     Score=87

KEGG

732944    K13220 WW domain-binding protein 4 | (RefSeq) WW domain binding protein 4

GO

GO:0000398   GO:0005634   GO:0003676   GO:0008270   GO:0046872   GO:0016491   GO:0005737   GO:0018025   GO:0005886   GO:0005230   GO:0004888   GO:0016021   GO:0005515   GO:0006355   GO:0043565   GO:0005852   GO:0006446   GO:0043022   GO:0005488   GO:0003707   GO:0051537  

PANTHER

PTHR13173   PTHR13539   PTHR18945  

Subcellular location

Nucleus  

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14915

outside

1  -  233

 

 

Pi

19.685549

Theta

20.618085

Tajima's D

-0.4577

CLR

0

CSRT

0.249887505624719

Interpretation

Uncertain