SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07338
Pre Gene Modal
BGIBMGA010672
Annotation
PREDICTED:_uncharacterized_protein_LOC106129120_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.673
 

Sequence

CDS
ATGGGCGGCGCGGGCGGCGGGTGGTCGCGCGAGGCCCCCGCGCTGCTCAGCACGGCGCTGCTGCTGGGCGGTGCGATGCCAGAGCGCCCACCGGCTCCACTCTTCACCATTGATAGCATACTGGCACCACGTCCACAGCCAACTATCCCACCTTTACAACTGCATCATTTGGCACATTCGCCTTTTCACAGAGCACATGATTTCTTTGGTACGTCCGCCAAACTGTTAGCGCTAACGGGAGTGAGTGGAGTCGGCAACGGTGTCTCCGGCGCTGGTAGCTACGGTAGCTTGTATGGGGGGTATGCTGCAGCCGCGCTAGCAGGCCTGGCCGGCCCTCCGCCAAAACGCAAGCGTCGTCACCGAACGATATTCACAGAAGAGCAACTCGAGCAATTGGAGAGTACGTTTGACAAGACACATTATCCGGACGTCGTCCTACGAGAGCAGCTCGCCCTCAGAGTCGATCTGAAAGAGGAAAGAGTCGAGGTATGGTTTAAGAATCGCCGTGCAAAATGGCGCAAGCAGAAACGCGAGGAGCAAGAAAGACTCAGAAAATTACAGGAGGAGCGATCCTGTGGCCGAGCTCCTCTGCTCTCGAGACCGACATTATCACCTGCCCATTCACCACCTGCACAGCTGCCGCCTGCACCTCCAACACCTCGCATGTACACGGATGATTCTGATTCAGATTTGGAAGTGGCTTAA
Protein
MGGAGGGWSREAPALLSTALLLGGAMPERPPAPLFTIDSILAPRPQPTIPPLQLHHLAHSPFHRAHDFFGTSAKLLALTGVSGVGNGVSGAGSYGSLYGGYAAAALAGLAGPPPKRKRRHRTIFTEEQLEQLESTFDKTHYPDVVLREQLALRVDLKEERVEVWFKNRRAKWRKQKREEQERLRKLQEERSCGRAPLLSRPTLSPAHSPPAQLPPAPPTPRMYTDDSDSDLEVA

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR009057   Homeobox-like_sf        + More
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
SUPFAM
SSF46689   SSF46689       
PDB
2M0C     E-value=1.60663e-16,     Score=208

Ontologies

Topology

Subcellular location
Nucleus  
Length:
234
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.75995
Exp number, first 60 AAs:
0.25952
Total prob of N-in:
0.05080
outside
1  -  234
 
 

Population Genetic Test Statistics

Pi
21.743073
Theta
21.207789
Tajima's D
0.127141
CLR
1.460505
CSRT
0.410329483525824
Interpretation
Uncertain
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