Silkworm Genome Informatics Database

Gene

KWMTBOMO07335 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010671

Annotation

eukaryotic_translation_initiation_factor_3_subunit_K_[Bombyx_mori]

Location

Bomo_Chr12(+):10748758-10755706 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.041

CDS

ATGGATAAATACAATCCAGATACATTCAGAATTGACGATTACATTGATTTTTTCGAAAACAAATGCAAAATTCTTGCTATCGATAACAGCGACTTACAGAAAGATTTGCTTCTGAATTTACTAACACCAGAGATATTCCACGAATTAAAAGTAGCTTTAACGCCTGATTTCGATATAGCTACATACAGCGAAATTTGTAACAAATTATTAGACCTCTATCGCATAAAAACGACGAGGTATAGAGCCTTAACAGAATTTTGGAATTGCACTAGAGAACAAAATGAAACGATGGAACACTATGCAAACAGATTAAAAGGTCTTAGTCGGGATTGTGGCTACACTAATGACTTCCTGGAACGACAATTACGTGACCGCTTTGCCACTGGATTGAATCATCCAGATTTAGAAACCGACTTGAAACAAAAATGGCCTGATTTAGTTCAAATGGTAGACGGAATACCACGAGAAGTAACCTTCCAACAAATTTTTACAATCTCTCAATCAAGAGAACAGGCAGAACAAGACACACCACGAACAAGTATTAAAAAAATAAATAGGAGCAAAACCAAAACCGTACCATTACATCAAAATACAACACGAAAATTAAATCCAATGCATTGTTTACGCTGTGGAAAGAAAGAACGGCACAGCCTATCACAGTGCTCAGCCAAGGACCATATGTGTAAAGAATGTAACACGAAAGCACACTTTGAGAGTTGTTGCATTAAGTCTGGACGGGCATACATCAGCTATTCAGAAGGGAGCCGAAAATCAATTAAAAAAATAACAAGACCTCATAAGTCCTCAACATCATCATCATCATCATCTATCTGTAATAACAAGGAAGAAAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGCATCAATGACATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTATGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGTAACACAAACTTAAAAACAAAGGGAATTACAAAAGTAACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAACACCGATGACTCTTAAAGAAATACTGGATAAACATTCACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGTTAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAATTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCGATTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAACGTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAGCCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAACCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGTATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACACCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAATACAAATCTCGAGCGCCGACTATTAGAATTTCTGTTTACATACAGAAACACTCCGCACTCGTCCACTGATACAATGGCCGAAACTATGAAACAGACAGTAGCATCTATACTCAAGAGCATTGAAAGGTACAATCCAGCTAATCTGGAAATACTAGAACGATATGTCGAAATGCAGTCCCGAGAAAACACATACGATTTGGGAGCTAATTTAGCTGTGCTCAAGCTATATCAATTTAATCCCGAAAAGTTTAACGCAGACATTACATGTCAGATACTTTTGAAAGCTCTTACTAATTTCCCGCATACCGATTTTACATTGTGCAAGTGCTTACTTCTTGAATCCGTGGTGGAAAATGAGACAATTTCTCAAATCAAATACTTAGCCGACATTCTGGAGCAATGTGACTTTGCTCAGTTTTGGAATAGAGTACACCAAATGCCAGAGCTGTGCAGTCGTATCAGTGGCTTCCATGACTCAATCAGAAAGTTTGTCTGTCATGTGGTTGGTATCACATTTCAGACTATTGACAAAAACAACCTGGCAAATCTGTTAGGAGGTATTGATGATGTAACATTGAAGCACTGGGTTAAGAAGTATGGATGGAGGGATGACGGTAGTCTTATCTTCATTGCTAATCAAGATGAAAATATTAAAACCAAGAATATTACAGAGAAGATTGAGTTTGATCATCTAGCCCCATTGATGGCTCTTTTATAA

Protein

MDKYNPDTFRIDDYIDFFENKCKILAIDNSDLQKDLLLNLLTPEIFHELKVALTPDFDIATYSEICNKLLDLYRIKTTRYRALTEFWNCTREQNETMEHYANRLKGLSRDCGYTNDFLERQLRDRFATGLNHPDLETDLKQKWPDLVQMVDGIPREVTFQQIFTISQSREQAEQDTPRTSIKKINRSKTKTVPLHQNTTRKLNPMHCLRCGKKERHSLSQCSAKDHMCKECNTKAHFESCCIKSGRAYISYSEGSRKSIKKITRPHKSSTSSSSSSICNNKEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKTSTPMTLKEILDKHSQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIERELDRLISEGIVEKVDPNITPIEWATPTVNILKSTGEIRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANDTKKCITSSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESVYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTDTMAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNADITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVTLKHWVKKYGWRDDGSLIFIANQDENIKTKNITEKIEFDHLAPLMALL

Uniprot

A0A1S3DTG6 A0A1S3DUJ5 X1XTW6

EMBL

ABLF02008333 ABLF02020937

Proteomes

UP000079169 UP000007819

Pfam

PF00665   rve        + More
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf
IPR001878   Znf_CCHC
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR041373   RT_RNaseH
IPR001995   Peptidase_A2_cat

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF50630   SSF50630

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A1S3DTG6 A0A1S3DUJ5 X1XTW6

PDB

6FEC E-value=1.27874e-66, Score=647

KEGG

733122 K15028 translation initiation factor 3 subunit K | (RefSeq) eIF3k; eukaryotic translation initiation

GO

GO:0015074 GO:0003676 GO:0008270 GO:0004190 GO:0003743 GO:0005737 GO:0005852 GO:0006446 GO:0043022 GO:0005488 GO:0003707 GO:0051537

Length:

1188

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0003

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00001

outside

1 - 1188

Pi

1.673474

Theta

2.929422

Tajima's D

-1.438076

CLR

23.096986

CSRT

0.055897205139743

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	YNPANLEILER	100.00	3e-04
28556443	SENSSPNPIPK	100.00	3e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree