Gene

KWMTBOMO07331  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010670

Annotation

PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(+):10695932-10715768      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.098

CDS

ATGGAGCCACCCAGTGCGGGGACCAGTTCTCCGGGTCTCTTAAACGCGCCTCCTCTTTTACCGCCTCCAATGCTAAGCGGTATGCCTCCACCAATGCCGCCCGCTGTGGCAATGCCACCAGTGCCTGGGTTACCTCCAAATATGGCTACATTACCACCGCCCATGGGCTTTCCTCCCATGTTGCCGCCTCCATTTTCAATACCACCGCCAGGATTCCCTGCATTCAAACCGGAATTAAATGCTCCTGCACCAGATGTTGCTCCATCGGCAAATCAAAGTAGTCCATGGTCTGAACATAAGGCCCCTGATGGAAGAACATATTACTATAATTCTGTAACCAAACAAAGCTTGTGGGAAAAACCTGACGACTTAAAAACGTCAGCTGAGAAACTATTATCTGCTTGTGTATGGAAAGAATATACCACAAATACTGGCAGACTTTACTATCATAATATTGAGACAAAGGAGTCCAGTTGGGTAGTACCGAAAGAATTACAGGAGATTAAAGACAAAATTGCTGCTGAAGAAGCTGCTCAGCGCATTGTGATGGAAGTAACACCGAGTGAGGTGCCGCTGCCGGCAGAGCCTGCAGGCTCCTCCGCCCTTGACGAAGCTATGGCTAAAACATTAGCAGCCATTGATACCTCATTGGCCACATCCATACCTGTACCTGACGAAAAACCAGAAGACACAGTTTCAATTAATAATGAAACTCAAGAACAACCTGAGATGTTGTACAAAGACAAGAAAGAAGCTATTGAAGCATTTAAAGAACTCCTGAAAGATAAGAATATACCCTCAAATGCAACATGGGAACAATGTGTAAAAGTTATTTCAAAAGATCCACGATATGTCACTTTTAAAAAACTCAATGAAAAGAAACAAGCGTTCAATGCTTACAAAACTCAAAAACTAAAAGATGAAAGAGAGGAACAGAGACTGAAAACAAAAAAAAATCGCGAGAATCTTGAAGAGTTTTTGTTGAGTTGCGAACGGGTGACATCTCTAACAAAATTTTACAAATGTGAAGAAATGTTCAGCAATCTAGAGATTTGGCGATGTGTTCCAGAAGCCGATCGTAGGGACATATTTGAAGATTGTATTTTTACTATAGCGAAACGGGAAAAAGAAGAAGCAAAGGCTTTAAAGAAACGGAACATGAAAATGTTAACCCAGGTATTAGAGAACATGAGCGAAATTACGTACAGTAGTACGTGGAGTGAGGCACAAGTACTATTGCTAGAAAATTCAGCTTTTAAAAATGATGTTAGTTTACTAGGTATGGACAAGGAAGATGCCCTGATTGTATTTGAACAACACATACGAAATTTAGAAGCTGAATATCAACAAGAAAGAGAACAAATTAAAAAGAGGAATAAAAGACAACAAAGAAAAAATAGAGACAACTTTTTGGCTTTGCTGGACAGTCTTCATGAAGAAGGTAAATTGACATCGATGTCTCTATGGGTCGAGCTGTATCCGGTTATTTCTGCAGACATGAGATTTTCAGCTATGTTAGGACAAAGCGGATCGACACCGTTAGACTTATTCAAGTTTTACGTTGAAAATTTGAAAGCGAGGTTCCACGACGAAAAGAAGATAATAAAGGAGATACTGAAAGACAAGAATTTCGAAGTTAAACCGGAGACCACGTTCGAGGAGTTCGCCACCGTCGTGTGCGAGGACAGCAAGTCCGCCTCGCTCGACGCCGGAAATGTCAAACTTACTTACAATTCGCTTTTAGAGAAGGCTGAAACTAGAAAGAAGGAGAAATTGAAAGAAGAATCGAAAGCTCAAAAGAAAATAGAATCTGCATTTAAATGGGCATTGAGTGATGCAAACATCGACCACCTGCTCTCGTGGAGCGAGGTTAAGGAGAAACTTGACTTGAACGCGCCAGAGTTTGCCGCCGTCACCAGTGAAGAAGACAGAATTAGAATTTATAAGGATTATCAGCATGAACAAGAAGAAAGCTGCATGCACTATCACCATCCAAAACCAAAGAAGTCCAAACGATCAAAGAAGAAGAAGCGTTCTCACTCTGCCTCTTTGTCTCGGTCAGCATCAGCGTCGCGGTCGCCATCCCCGGCACCGAGCCACGGCACTTGGAGCTCCGACGAGGGCCGGAAACCCAAGAAAACTAAGAAGAAGCATCGGAGGCACTCTCCTGCTCCGAAATCACCGTCTCCCGAGGAGGGTGGCATCACAGACGACGAAGAAGTGATTCGGCACAAAAACAAAAAGACGAAACGCAGTGCGCCCAGCAGCCCGGAAGAGGAACAGGAACCGGAAATCGTTTACAAACCCAAGAAGAAGAAGGACAAGAAAGATAAAAAAGAGAGGTCGGGTGCGGCGTGGAGTGACGCCGACCTGGAGTCGCGTCGTGCGGCGCTGCTAGCTCAGCTGCACGAGCACGAGGCGGACTGA

Protein

MEPPSAGTSSPGLLNAPPLLPPPMLSGMPPPMPPAVAMPPVPGLPPNMATLPPPMGFPPMLPPPFSIPPPGFPAFKPELNAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKEYTTNTGRLYYHNIETKESSWVVPKELQEIKDKIAAEEAAQRIVMEVTPSEVPLPAEPAGSSALDEAMAKTLAAIDTSLATSIPVPDEKPEDTVSINNETQEQPEMLYKDKKEAIEAFKELLKDKNIPSNATWEQCVKVISKDPRYVTFKKLNEKKQAFNAYKTQKLKDEREEQRLKTKKNRENLEEFLLSCERVTSLTKFYKCEEMFSNLEIWRCVPEADRRDIFEDCIFTIAKREKEEAKALKKRNMKMLTQVLENMSEITYSSTWSEAQVLLLENSAFKNDVSLLGMDKEDALIVFEQHIRNLEAEYQQEREQIKKRNKRQQRKNRDNFLALLDSLHEEGKLTSMSLWVELYPVISADMRFSAMLGQSGSTPLDLFKFYVENLKARFHDEKKIIKEILKDKNFEVKPETTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAETRKKEKLKEESKAQKKIESAFKWALSDANIDHLLSWSEVKEKLDLNAPEFAAVTSEEDRIRIYKDYQHEQEESCMHYHHPKPKKSKRSKKKKRSHSASLSRSASASRSPSPAPSHGTWSSDEGRKPKKTKKKHRRHSPAPKSPSPEEGGITDDEEVIRHKNKKTKRSAPSSPEEEQEPEIVYKPKKKKDKKDKKERSGAAWSDADLESRRAALLAQLHEHEAD

Uniprot

H9JMB7   A0A2A4JVB7   A0A2H1VE01   A0A194PHY2   A0A194R2P6   A0A1E1W155   + More
D2A466   A0A1W4WVV7   A0A1Y1K8C7   A0A1Y1KG09   A0A1Y1K8G9   A0A0L7QNR5   A0A154PPP6   A0A088A1I7   A0A2A3EII4   A0A026X1E2   A0A1Y1KDJ1   A0A1Y1KB37   A0A1Y1K872   E2ACC7   A0A0C9RKZ6   F4WZV6   A0A0J7L715   A0A158NH65   E2BU72   A0A232F700   E9IL98   A0A151ICF1   A0A1Y1KE41   A0A1Y1K8F6   N6U607   K7IVK3   U4U4T0   A0A151XAH3   A0A195B719   A0A195FFP4   A0A195DXK7   A0A1B0D1J8   A0A1B0C8A0   A0A182MW53   A0A182Y3H6   A0A336LL88   A0A336LQS5   A0A336LQA8   A0A182R2Z8   A0A336LL83   A0A336LYI3   A0A182W6R1   Q17BB3   A0A182NU18   Q7PNE5   A0A182XL43   A0A1S4GXR9   A0A182ICH9   A0A182JY97   A0A182UVP3   A0A182TVT5   W5JFM9   U5ESU8   A0A084W4U2   A0A1B6EA38   A0A0P4WBT2   A0A1Q3FW24   A0A0N7ZBZ3   A0A1Q3F1D3   A0A182GKQ7   A0A182PCN5   A0A182GQ15   A0A0P4WEZ2   A0A0P4W9L4   A0A3Q0JD52   A0A1I8PA21   A0A1I8P9U2   A0A3Q0J859   A0A182UIZ9   A0A1S4EK48   B0X9W9   A0A0L0BZF9   E9HFR0   A0A1I8NAE5   B3MMY5   A0A0A9W9D7   A0A1B0G9K7   A0A1A9Z7U5   B4MW11   A0A1A9V864   A0A3B0JH08   A0A3B0K3F4   Q29LZ7   A0A1A9XEN0   A0A0R3P0A0   B4G6Z5   A0A1B0C570   A0A0J9QVI7   A0A0A9W9E5   A0A0A9WBA7   A0A0P5DV99   A0A0P6ACK2   Q9VQK5  

Pubmed

19121390    26354079    18362917    19820115    28004739    24508170    + More
20798317    21719571    21347285    28648823    21282665    23537049    20075255    25244985    17510324    12364791    20920257    23761445    24438588    26483478    26108605    21292972    25315136    17994087    25401762    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01033439    BABH01033440    BABH01033441    NWSH01000510    PCG75951.1    ODYU01002047    + More
SOQ39068.1    KQ459603    KPI92658.1    KQ460845    KPJ12063.1    GDQN01010348    JAT80706.1    KQ971348    EFA05623.1    GEZM01089113    JAV57689.1    GEZM01089115    JAV57687.1    GEZM01089118    JAV57684.1    KQ414851    KOC60209.1    KQ435012    KZC13866.1    KZ288241    PBC31284.1    KK107063    EZA61199.1    GEZM01089117    JAV57685.1    GEZM01089114    JAV57688.1    GEZM01089120    JAV57682.1    GL438491    EFN68917.1    GBYB01007586    JAG77353.1    GL888480    EGI60246.1    LBMM01000397    KMQ98458.1    ADTU01015146    GL450586    EFN80756.1    NNAY01000799    OXU26445.1    GL764074    EFZ18647.1    KQ978053    KYM97764.1    GEZM01089116    JAV57686.1    GEZM01089119    JAV57683.1    APGK01047620    APGK01047621    APGK01047622    KB741084    ENN74007.1    KB632108    ERL88889.1    KQ982339    KYQ57357.1    KQ976574    KYM80313.1    KQ981625    KYN39047.1    KQ980107    KYN17613.1    AJVK01022090    AJWK01000296    AXCM01001956    AXCM01001957    UFQT01000042    SSX18726.1    SSX18727.1    SSX18729.1    SSX18730.1    SSX18728.1    CH477324    EAT43533.1    AAAB01008964    EAA12318.5    APCN01000799    ADMH02001645    ETN61619.1    GANO01003066    JAB56805.1    ATLV01020383    KE525299    KFB45236.1    GEDC01002502    JAS34796.1    GDRN01075703    JAI63012.1    GFDL01003224    JAV31821.1    GDRN01075709    GDRN01075708    JAI63008.1    GFDL01013679    JAV21366.1    JXUM01070412    KQ562604    KXJ75509.1    JXUM01079561    KQ563134    KXJ74426.1    GDRN01075707    JAI63009.1    GDRN01075706    JAI63010.1    DS232553    EDS43395.1    JRES01001205    KNC24629.1    GL732637    EFX69363.1    CH902620    EDV31010.1    GBHO01038552    GBRD01007343    JAG05052.1    JAG58478.1    CCAG010009121    CH963857    EDW75881.1    OUUW01000004    SPP79562.1    SPP79561.1    CH379060    EAL33899.1    KRT04310.1    CH479180    EDW29194.1    JXJN01010999    JXJN01025882    CM002910    KMY87804.1    GBHO01038542    JAG05062.1    GBHO01038540    JAG05064.1    GDIP01157075    JAJ66327.1    GDIP01036250    JAM67465.1    AE014134    AY058551    AAF51160.1    AAL13780.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007266    UP000192223    + More
UP000053825    UP000076502    UP000005203    UP000242457    UP000053097    UP000000311    UP000007755    UP000036403    UP000005205    UP000008237    UP000215335    UP000078542    UP000019118    UP000002358    UP000030742    UP000075809    UP000078540    UP000078541    UP000078492    UP000092462    UP000092461    UP000075883    UP000076408    UP000075900    UP000075920    UP000008820    UP000075884    UP000007062    UP000076407    UP000075840    UP000075881    UP000075903    UP000075902    UP000000673    UP000030765    UP000069940    UP000249989    UP000075885    UP000079169    UP000095300    UP000002320    UP000037069    UP000000305    UP000095301    UP000007801    UP000092444    UP000092445    UP000007798    UP000078200    UP000268350    UP000001819    UP000092443    UP000008744    UP000092460    UP000000803   

PRIDE

H9JMB7    Q9VQK5   

Pfam

PF05653   Mg_trans_NIPA        + More
PF01846   FF
PF00397   WW
PF04055   Radical_SAM
PF00171   Aldedh
PF00919   UPF0004
PF01938   TRAM
PF02205   WH2
PF00076   RRM_1

Interpro

IPR036517   FF_domain_sf        + More
IPR002713   FF_domain       
IPR001202   WW_dom       
IPR036020   WW_dom_sf       
IPR008521   Mg_trans_NIPA       
IPR039726   Prp40-like       
IPR016161   Ald_DH/histidinol_DH       
IPR006638   Elp3/MiaB/NifB       
IPR016160   Ald_DH_CS_CYS       
IPR016163   Ald_DH_C       
IPR006463   MiaB_methiolase       
IPR005839   Methylthiotransferase       
IPR016162   Ald_DH_N       
IPR005931   P5CDH/ALDH4A1       
IPR023404   rSAM_horseshoe       
IPR013848   Methylthiotransferase_N       
IPR020612   Methylthiotransferase_CS       
IPR038135   Methylthiotransferase_N_sf       
IPR015590   Aldehyde_DH_dom       
IPR007197   rSAM       
IPR002792   TRAM_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR003124   WH2_dom       
IPR035979   RBD_domain_sf       
IPR036443   Znf_RanBP2_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR001876   Znf_RanBP2       
IPR000504   RRM_dom       

SUPFAM

SSF51045   SSF51045        + More
SSF81698   SSF81698       
SSF53720   SSF53720       
SSF90209   SSF90209       
SSF54928   SSF54928       

Gene 3D

1.10.10.440     3.40.309.10     3.40.50.12160     3.40.605.10     3.80.30.20     3.30.70.330    

CDD

cd00201  WW
cd07123  ALDH_F4-17_P5CDH

ProteinModelPortal

H9JMB7   A0A2A4JVB7   A0A2H1VE01   A0A194PHY2   A0A194R2P6   A0A1E1W155   + More
D2A466   A0A1W4WVV7   A0A1Y1K8C7   A0A1Y1KG09   A0A1Y1K8G9   A0A0L7QNR5   A0A154PPP6   A0A088A1I7   A0A2A3EII4   A0A026X1E2   A0A1Y1KDJ1   A0A1Y1KB37   A0A1Y1K872   E2ACC7   A0A0C9RKZ6   F4WZV6   A0A0J7L715   A0A158NH65   E2BU72   A0A232F700   E9IL98   A0A151ICF1   A0A1Y1KE41   A0A1Y1K8F6   N6U607   K7IVK3   U4U4T0   A0A151XAH3   A0A195B719   A0A195FFP4   A0A195DXK7   A0A1B0D1J8   A0A1B0C8A0   A0A182MW53   A0A182Y3H6   A0A336LL88   A0A336LQS5   A0A336LQA8   A0A182R2Z8   A0A336LL83   A0A336LYI3   A0A182W6R1   Q17BB3   A0A182NU18   Q7PNE5   A0A182XL43   A0A1S4GXR9   A0A182ICH9   A0A182JY97   A0A182UVP3   A0A182TVT5   W5JFM9   U5ESU8   A0A084W4U2   A0A1B6EA38   A0A0P4WBT2   A0A1Q3FW24   A0A0N7ZBZ3   A0A1Q3F1D3   A0A182GKQ7   A0A182PCN5   A0A182GQ15   A0A0P4WEZ2   A0A0P4W9L4   A0A3Q0JD52   A0A1I8PA21   A0A1I8P9U2   A0A3Q0J859   A0A182UIZ9   A0A1S4EK48   B0X9W9   A0A0L0BZF9   E9HFR0   A0A1I8NAE5   B3MMY5   A0A0A9W9D7   A0A1B0G9K7   A0A1A9Z7U5   B4MW11   A0A1A9V864   A0A3B0JH08   A0A3B0K3F4   Q29LZ7   A0A1A9XEN0   A0A0R3P0A0   B4G6Z5   A0A1B0C570   A0A0J9QVI7   A0A0A9W9E5   A0A0A9WBA7   A0A0P5DV99   A0A0P6ACK2   Q9VQK5  

PDB

2L5F     E-value=1.71428e-21,     Score=256

KEGG

101742390    K12821 pre-mRNA-processing factor 40 | (RefSeq) pre-mRNA-processing factor 40 homolog A

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0015095   GO:0045292   GO:0071004   GO:0000398   GO:0005685   GO:0003723   GO:0010133   GO:0006400   GO:0016740   GO:0003842   GO:0051539   GO:0016620   GO:0003824   GO:0003779   GO:0046872   GO:0071011   GO:0005515   GO:0015693   GO:0006488   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

PANTHER

PTHR11864  

Length:

808

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00407999999999999

Exp number, first 60 AAs:

0.00407999999999999

Total prob of N-in:

0.00021

outside

1  -  808

 

 

Pi

0.90556

Theta

4.377904

Tajima's D

-2.199996

CLR

303.073677

CSRT

0.00379981000949953

Interpretation

Possibly Positive selection