Gene

KWMTBOMO07328  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010668

Annotation

PREDICTED:_barrier-to-autointegration_factor_B_[Plutella_xylostella]

Location

Bomo_Chr12(+):10675912-10677238      View in EpiBrowser

Full name

Barrier-to-autointegration factor B      

Location in the cell

Cytoplasmic   Reliability : 1.319 Extracellular   Reliability : 1.041 Nuclear   Reliability : 1.092

CDS

ATGTCGAGTACATCACAAAAACATAGAAACTTTGTTGCTGAGCCAATGGGTGAGAAACCAGTAACAGAATTGGCGGGCGTGGGTGAAGTTTTAGGAAAACGACTTGAAACCGGGGGCTTCGATAAGGCCTATGTCGTCTTGGGTCAATTTTTGGTACTAAAGAAAGATAAAGAGTTATTTCAAGAATGGATGAAGGACGCCTGCAGTGCAAACTCTAAACAGTCAGCAGATTGTTATCAGTGTTTGAAGGATTGGTGTGATGAGTTTTTGTAA

Protein

MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQEWMKDACSANSKQSADCYQCLKDWCDEFL

Description

Plays fundamental roles in nuclear assembly, chromatin organization, gene expression and gonad development. May potently compress chromatin structure and be involved in membrane recruitment and chromatin decondensation during nuclear assembly. Contains 2 non-specific dsDNA-binding sites which may promote DNA cross-bridging (By similarity).

Subunit

Homodimer. Binds non-specifically to double-stranded DNA, and is found as hexamer or dodecamer upon DNA binding. Binds to LEM domain-containing nuclear proteins (By similarity). Interacts with nemp1a and nemp1b.

Similarity

Belongs to the BAF family.

Keywords

Chromosome   DNA-binding   Nucleus   Phosphoprotein  

Feature

chain  Barrier-to-autointegration factor B

Uniprot

H9JMB5   A0A2H1WQB1   A0A0N1PJH5   A0A194PH77   S4PMT5   A0A2W1BK97   + More
A0A2A4K0Q7   A0A3S2NFE2   A0A151I141   A0A158NG20   A0A195E805   A0A151XB73   F4X6K3   E2A9L1   A0A023FA51   E2BN03   A0A026WSU2   A0A232FLN1   K7IVY9   A0A0J7KL26   A0A0V0G9R1   A0A0M8ZXE7   A0A2P8YDF6   A0A069DNU4   A0A0L7LIL8   A0A2R7WXE5   D2A041   A0A154P269   A0A088AKM9   A0A151ILJ9   A0A310SJK4   A0A182QRX6   T1DPJ3   A0A2M4CTB1   A0A2M3ZKD5   A0A2M4C4X1   A0A182F3P2   A0A2J7PMW7   A0A182YM16   A0A2C9GS31   A0A182P2V0   A0A182MBC2   A0A182V206   A0A182K306   A0A182TE78   A0A182VTK1   A0A084VMP1   A0A182X659   Q7Q881   A0A182R441   A0A2M4AZ37   A0A195F1Z9   G1K0C4   A0A2A3EDU8   A0A1W4XWA5   A0A182NB89   E9J5Y3   T1DFU6   A0A0P4VRZ0   A0A1L8DX15   A0A1B0CDL9   A0A1Q3F4W9   B0W6Y7   N6UAN5   Q1HRI3   A0A023ECD3   U5ELZ8   A0A224XZD6   A0A2R5LHF0   A0A067RDK3   A0A023G0W2   A0A224YVQ0   A0A131YEX3   A0A131XN04   A0A023FDQ5   E0W3Y0   A0A0K8R5J2   A0A1E1WWF0   A0A1J1IJZ8   A0A182JHN6   C1BUT6   C1C252   A0A0K8TT20   C1BQK5   A0A2I4BVX9   A0A182KWK4   A0A3P8VU86   A0A3Q3E8F5   A0A3B4ZDG9   A0A3B3HU08   A0A3P9MLN3   A0A3Q3LEY2   A0A087T752   A0A3B4YLL8   A0A3B4UU04   A0A1L8GCL6   Q66KV4   A0A0E9X1H6   A0A1S3DEN4   A0A3Q3W3D2  

Pubmed

19121390    26354079    23622113    28756777    21347285    21719571    + More
20798317    25474469    24508170    30249741    28648823    20075255    29403074    26334808    26227816    18362917    19820115    25244985    24438588    12364791    14747013    17210077    21736942    21282665    24330624    27129103    23537049    17204158    17510324    24945155    26483478    24845553    28797301    26830274    28049606    20566863    28503490    26369729    20966253    24487278    17554307    27762356    19167377    25613341   

EMBL

BABH01033435    BABH01033436    ODYU01009901    SOQ54624.1    KQ460456    KPJ14662.1    + More
KQ459603    KPI92657.1    GAIX01000006    JAA92554.1    KZ150090    PZC73697.1    NWSH01000276    PCG77827.1    RSAL01000139    RVE46117.1    KQ976580    KYM79899.1    ADTU01014889    KQ979568    KYN20957.1    KQ982335    KYQ57606.1    GL888818    EGI57963.1    GL437917    EFN69901.1    GBBI01000909    JAC17803.1    GL449382    EFN82907.1    KK107109    QOIP01000008    EZA59100.1    RLU19458.1    NNAY01000040    OXU31644.1    LBMM01006104    KMQ90936.1    GECL01002013    JAP04111.1    KQ435811    KOX72877.1    PYGN01000689    PSN42204.1    GBGD01003627    JAC85262.1    JTDY01000955    KOB75292.1    KK855873    PTY24208.1    KQ971338    EFA02465.1    KQ434787    KZC05308.1    KQ977104    KYN05765.1    KQ760551    OAD59838.1    OAD59839.1    AXCN02000633    GAMD01003299    JAA98291.1    GGFL01004389    MBW68567.1    GGFM01008169    MBW28920.1    GGFJ01011168    MBW60309.1    NEVH01023960    PNF17681.1    APCN01000645    AXCM01002111    ATLV01014616    KE524975    KFB39235.1    AAAB01008944    EAA10294.1    GGFK01012661    MBW45982.1    KQ981864    KYN34192.1    JO495005    AEL79235.1    KZ288285    PBC29462.1    GL768221    EFZ11768.1    GALA01000432    JAA94420.1    GDKW01001927    JAI54668.1    GFDF01003093    JAV10991.1    AJWK01007998    GFDL01012434    JAV22611.1    DS231851    EDS37261.1    APGK01032040    KB740834    KB632166    ENN78800.1    ERL89332.1    DQ440111    CH477527    ABF18144.1    EAT39517.1    JXUM01086049    GAPW01006624    GAPW01006620    KQ563540    JAC06978.1    KXJ73694.1    GANO01001212    JAB58659.1    GFTR01001008    JAW15418.1    GGLE01004621    MBY08747.1    KK852572    KDR21103.1    GBBL01000815    JAC26505.1    GFPF01007237    MAA18383.1    GEDV01011525    JAP77032.1    GEFH01000152    JAP68429.1    GBBK01004451    JAC20031.1    DS235883    EEB20336.1    GADI01007371    JAA66437.1    GFAC01007833    JAT91355.1    CVRI01000054    CRK99868.1    BT078365    ACO12789.1    BT080931    ACO15355.1    GDAI01000310    JAI17293.1    BT076884    BT076967    ACO11308.1    KK113747    KFM60941.1    CM004473    OCT81677.1    BC078546    GBXM01013019    JAH95558.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000283053    UP000078540    + More
UP000005205    UP000078492    UP000075809    UP000007755    UP000000311    UP000008237    UP000053097    UP000279307    UP000215335    UP000002358    UP000036403    UP000053105    UP000245037    UP000037510    UP000007266    UP000076502    UP000005203    UP000078542    UP000075886    UP000069272    UP000235965    UP000076408    UP000075840    UP000075885    UP000075883    UP000075903    UP000075881    UP000075902    UP000075920    UP000030765    UP000076407    UP000007062    UP000075900    UP000078541    UP000242457    UP000192223    UP000075884    UP000092461    UP000002320    UP000019118    UP000030742    UP000008820    UP000069940    UP000249989    UP000027135    UP000009046    UP000183832    UP000075880    UP000192220    UP000075882    UP000265120    UP000261660    UP000261400    UP000001038    UP000265180    UP000265200    UP000261640    UP000054359    UP000261360    UP000261420    UP000186698    UP000079169    UP000261620   

PRIDE

H9JMB5    Q66KV4   

Pfam

PF02961   BAF

Interpro

IPR004122   BAF_prot        + More
IPR036617   BAF_sf       
IPR002885   Pentatricopeptide_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR006150   Cys_repeat_1       
IPR009030   Growth_fac_rcpt_cys_sf       

SUPFAM

SSF47798   SSF47798        + More
SSF57184   SSF57184       

Gene 3D

1.10.150.40     1.25.40.10    

ProteinModelPortal

H9JMB5   A0A2H1WQB1   A0A0N1PJH5   A0A194PH77   S4PMT5   A0A2W1BK97   + More
A0A2A4K0Q7   A0A3S2NFE2   A0A151I141   A0A158NG20   A0A195E805   A0A151XB73   F4X6K3   E2A9L1   A0A023FA51   E2BN03   A0A026WSU2   A0A232FLN1   K7IVY9   A0A0J7KL26   A0A0V0G9R1   A0A0M8ZXE7   A0A2P8YDF6   A0A069DNU4   A0A0L7LIL8   A0A2R7WXE5   D2A041   A0A154P269   A0A088AKM9   A0A151ILJ9   A0A310SJK4   A0A182QRX6   T1DPJ3   A0A2M4CTB1   A0A2M3ZKD5   A0A2M4C4X1   A0A182F3P2   A0A2J7PMW7   A0A182YM16   A0A2C9GS31   A0A182P2V0   A0A182MBC2   A0A182V206   A0A182K306   A0A182TE78   A0A182VTK1   A0A084VMP1   A0A182X659   Q7Q881   A0A182R441   A0A2M4AZ37   A0A195F1Z9   G1K0C4   A0A2A3EDU8   A0A1W4XWA5   A0A182NB89   E9J5Y3   T1DFU6   A0A0P4VRZ0   A0A1L8DX15   A0A1B0CDL9   A0A1Q3F4W9   B0W6Y7   N6UAN5   Q1HRI3   A0A023ECD3   U5ELZ8   A0A224XZD6   A0A2R5LHF0   A0A067RDK3   A0A023G0W2   A0A224YVQ0   A0A131YEX3   A0A131XN04   A0A023FDQ5   E0W3Y0   A0A0K8R5J2   A0A1E1WWF0   A0A1J1IJZ8   A0A182JHN6   C1BUT6   C1C252   A0A0K8TT20   C1BQK5   A0A2I4BVX9   A0A182KWK4   A0A3P8VU86   A0A3Q3E8F5   A0A3B4ZDG9   A0A3B3HU08   A0A3P9MLN3   A0A3Q3LEY2   A0A087T752   A0A3B4YLL8   A0A3B4UU04   A0A1L8GCL6   Q66KV4   A0A0E9X1H6   A0A1S3DEN4   A0A3Q3W3D2  

PDB

2ODG     E-value=1.14786e-34,     Score=360

KEGG

101742097    K21870 barrier-to-autointegration factor | (RefSeq) barrier-to-autointegration factor B

GO

GO:0003677   GO:0030261   GO:0007059   GO:0005654   GO:0005635   GO:0005694   GO:0005524   GO:0006260   GO:0006487   GO:0006488   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

PANTHER

PTHR12912  

Subcellular location

Nucleus   Colocalizes with nemp1a and nemp1b at the nuclear envelope.   With evidence from 2 publications.
Nucleus envelope   Colocalizes with nemp1a and nemp1b at the nuclear envelope.   With evidence from 2 publications.
Chromosome   Colocalizes with nemp1a and nemp1b at the nuclear envelope.   With evidence from 2 publications.

Length:

90

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00181

Exp number, first 60 AAs:

0.00181

Total prob of N-in:

0.66577

inside

1  -  90

 

 

Pi

0.807891

Theta

5.142472

Tajima's D

-2.302381

CLR

1044.86631

CSRT

0.00199990000499975

Interpretation

Possibly Positive selection