Gene

KWMTBOMO07326

Annotation

PREDICTED:_TATA-box-binding_protein-like_[Papilio_xuthus]

Location

Bomo_Chr12(+):10657602-10665935      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.998

CDS

ATGGAAGTCTCTCAAGAAAATAGGGTTGAAAAAGAACATGAAGGTTCTATCAGTGAAATGTATTCAACACCAAAAACACCAATCAAAGCTCAAAATTTTAGTAAAGAAGATGCAGGAGTTTCAGGAACAAACTTAAGTTCACAAGTTGTTAATGGGGATGTTGCATTAACTCCTACTAATAGTTCATTCACACCTCAACCACTTAATCCACACAATTCTATGACTGCTTTAACACCTATGCCAAGTGCATCCACTCAAGCAAAAAGCAGTATCAAGCTACAAAATTGTGTTGCCACAGTCAGTTTAGGATGTGAACTAAAATTATTAGATATTTACTGCAGAACAAGATACTCTGAATATAATCCTGCAAGATTTCAAGGTGTTGTCATGAAAATATTAGATCCTCGAGCTACCGCCTTAGTATTCAGATCTGGGAAAATAGTTTGTACTGGGACAAGAAATGAACATGATTCATATGTAGCTGCAAGAAAAATTGCAAGGATTATACAAAAACTCGGATTCCCAGCAAAATTTTTGAATTTCAAAATACAAAATTTTATTGCTACTGCTGACCTTAGATTTCCAATAAAATTAGAAGCTTTACAGCAGGCACATGGTCAATTCTCCAGTTATGAACCAGAATTATTCCCAGGACTTGTTTACAGAATGGTGAGACCGAGAGTTGTCTTGCTTATTTTTGTTAACGGAAAAATGGTAATTACAGGTGGAAAATCAAGAACGGAAATTAGTGAAGCTGTAGATGTCATATATCCTATTTTAAGAAGTTACCGAATTAGTTAA

Protein

MEVSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVFRSGKIVCTGTRNEHDSYVAARKIARIIQKLGFPAKFLNFKIQNFIATADLRFPIKLEALQQAHGQFSSYEPELFPGLVYRMVRPRVVLLIFVNGKMVITGGKSRTEISEAVDVIYPILRSYRIS

Uniprot

A0A1E1W1X2   A0A2A4IZC2   A0A2H1V599   A0A194PIW1   A0A212EU32   S4PBM8   + More
B0W4M6   Q17JE5   A0A023EKE3   A0A336LYM0   A0A1Y1KDB2   A0A1L8DGW8   A0A0L7LIB5   A0A1B0DHZ1   A0A182W767   A0A182LVE9   A0A182S947   A0A182WU65   A0A182UX33   A0A182L1K4   A0A182TUP7   A0A182HUS7   A0A182JTQ7   A0A182Y050   A0A1I8P8Z9   W5J698   A0A182Q452   A0A0L7QVA8   A0A1I8P8W9   A0A182F6B8   A0A1S4GY00   A0A182S4U1   A0A182NUA3   A0A1I8N4N7   A0A088AT44   A0A084VN74   A0A232EZT2   A0A0K8TMV8   A0A1B0FEE8   A0A182PMM4   A0A1A9Z7W9   A0A1A9V876   A0A1B0C3H9   A0A1A9XEQ8   U5ERY7   A0A151JXG9   W8CDH3   A0A1A9WXJ3   A0A0L0CMH5   A0A151HZC9   A0A158NE17   A0A034WJT7   A0A0K8UE99   F4X442   A0A151WS36   A0A154NW54   A0A151IIM0   A0A2P8Z3E6   A0A0A1XN85   E2BJ50   A0A151ISN9   A0A2J7PTZ0   A0A026W5U7   A0A2A3EHJ3   Q29L40   B4H8S3   A0A0M9A5L2   A0A3B0JHZ5   B4KEC3   B4MUI2   B3MMX4   J3JVS1   F6UIV7   A0A0B6YAJ1   N6T0V3   H0ZS63   B4LSL7   A0A2J7R903   A0A1B6KM86   V9KUP6   A0A023F2E2   B4JC02   R0L2G6   A0A3S1BIK1   A0A0M4E0N2   B4NWD2   A0A1W4W8R2   A6H913   E2BLK6   U3IH47   E9IBP8   A0A1B6D291   A0A0F8ACE5   A0A1W4ZXA6   A0A2I4AP46   A0A0J7NEM6   B4Q694  

Pubmed

26354079    22118469    23622113    17510324    24945155    26483478    + More
28004739    26227816    20966253    25244985    20920257    23761445    12364791    25315136    24438588    28648823    26369729    24495485    26108605    21347285    25348373    21719571    29403074    25830018    20798317    24508170    30249741    15632085    17994087    22516182    19892987    23537049    20360741    24402279    25474469    17550304    17570761    21551351    23749191    21282665    25835551    22936249   

EMBL

GDQN01010078    JAT80976.1    NWSH01004441    PCG65111.1    ODYU01000758    SOQ36025.1    + More
KQ459603    KPI92654.1    AGBW02012509    OWR44967.1    GAIX01004541    JAA88019.1    DS231838    EDS33871.1    CH477233    EAT46758.1    JXUM01043841    GAPW01003987    KQ561377    JAC09611.1    KXJ78795.1    UFQS01000292    UFQT01000292    SSX02526.1    SSX22900.1    GEZM01087769    JAV58488.1    GFDF01008386    JAV05698.1    JTDY01000955    KOB75293.1    AJVK01006086    AXCM01002726    APCN01002476    ADMH02002020    ETN59952.1    AXCN02000770    KQ414731    KOC62396.1    AAAB01008964    ATLV01014722    KE524984    KFB39418.1    NNAY01001475    OXU23839.1    GDAI01002127    JAI15476.1    CCAG010005473    JXJN01024953    GANO01003493    JAB56378.1    KQ981607    KYN39409.1    GAMC01001946    JAC04610.1    JRES01000186    KNC33500.1    KQ976687    KYM78137.1    ADTU01013100    GAKP01004350    JAC54602.1    GDHF01027418    JAI24896.1    GL888625    EGI58766.1    KQ982796    KYQ50601.1    KQ434771    KZC03823.1    KQ977477    KYN02494.1    PYGN01000215    PSN51015.1    GBXI01001880    JAD12412.1    GL448558    EFN84200.1    KQ981064    KYN09849.1    NEVH01021216    PNF19801.1    KK107425    QOIP01000001    EZA50986.1    RLU26953.1    KZ288254    PBC30742.1    CH379061    EAL32984.1    CH479225    EDW35132.1    KQ435750    KOX76339.1    OUUW01000006    SPP82034.1    CH933807    EDW12891.1    CH963857    EDW76177.1    CH902620    EDV30999.1    BT127339    AEE62301.1    HACG01005570    CEK52435.1    APGK01049149    KB741142    KB632266    ENN73724.1    ERL90969.1    ABQF01004089    CH940649    EDW64839.1    NEVH01006721    PNF37317.1    GEBQ01032014    GEBQ01027424    JAT07963.1    JAT12553.1    JW870174    AFP02692.1    GBBI01002930    JAC15782.1    CH916368    EDW04105.1    KB744769    EOA94442.1    RQTK01000064    RUS89141.1    CP012523    ALC38728.1    CM000157    EDW88449.1    BK005778    DAA06038.1    GL449036    EFN83340.1    ADON01134817    GL762137    EFZ21981.1    GEDC01017532    GEDC01014326    JAS19766.1    JAS22972.1    KQ042762    KKF11095.1    LBMM01006062    KMQ90970.1    CM000361    CM002910    EDX04170.1    KMY88915.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000002320    UP000008820    UP000069940    + More
UP000249989    UP000037510    UP000092462    UP000075920    UP000075883    UP000075901    UP000076407    UP000075903    UP000075882    UP000075902    UP000075840    UP000075881    UP000076408    UP000095300    UP000000673    UP000075886    UP000053825    UP000069272    UP000075900    UP000075884    UP000095301    UP000005203    UP000030765    UP000215335    UP000092444    UP000075885    UP000092445    UP000078200    UP000092460    UP000092443    UP000078541    UP000091820    UP000037069    UP000078540    UP000005205    UP000007755    UP000075809    UP000076502    UP000078542    UP000245037    UP000008237    UP000078492    UP000235965    UP000053097    UP000279307    UP000242457    UP000001819    UP000008744    UP000053105    UP000268350    UP000009192    UP000007798    UP000007801    UP000002281    UP000019118    UP000030742    UP000007754    UP000008792    UP000001070    UP000271974    UP000092553    UP000002282    UP000192221    UP000005226    UP000016666    UP000192224    UP000192220    UP000036403    UP000000304   

Pfam

PF00352   TBP

Interpro

IPR033710   TBP_eukaryotic        + More
IPR012295   TBP_dom_sf       
IPR030491   TBP_CS       
IPR000814   TBP       

Gene 3D

3.30.310.10    

CDD

cd04516  TBP_eukaryotes

ProteinModelPortal

A0A1E1W1X2   A0A2A4IZC2   A0A2H1V599   A0A194PIW1   A0A212EU32   S4PBM8   + More
B0W4M6   Q17JE5   A0A023EKE3   A0A336LYM0   A0A1Y1KDB2   A0A1L8DGW8   A0A0L7LIB5   A0A1B0DHZ1   A0A182W767   A0A182LVE9   A0A182S947   A0A182WU65   A0A182UX33   A0A182L1K4   A0A182TUP7   A0A182HUS7   A0A182JTQ7   A0A182Y050   A0A1I8P8Z9   W5J698   A0A182Q452   A0A0L7QVA8   A0A1I8P8W9   A0A182F6B8   A0A1S4GY00   A0A182S4U1   A0A182NUA3   A0A1I8N4N7   A0A088AT44   A0A084VN74   A0A232EZT2   A0A0K8TMV8   A0A1B0FEE8   A0A182PMM4   A0A1A9Z7W9   A0A1A9V876   A0A1B0C3H9   A0A1A9XEQ8   U5ERY7   A0A151JXG9   W8CDH3   A0A1A9WXJ3   A0A0L0CMH5   A0A151HZC9   A0A158NE17   A0A034WJT7   A0A0K8UE99   F4X442   A0A151WS36   A0A154NW54   A0A151IIM0   A0A2P8Z3E6   A0A0A1XN85   E2BJ50   A0A151ISN9   A0A2J7PTZ0   A0A026W5U7   A0A2A3EHJ3   Q29L40   B4H8S3   A0A0M9A5L2   A0A3B0JHZ5   B4KEC3   B4MUI2   B3MMX4   J3JVS1   F6UIV7   A0A0B6YAJ1   N6T0V3   H0ZS63   B4LSL7   A0A2J7R903   A0A1B6KM86   V9KUP6   A0A023F2E2   B4JC02   R0L2G6   A0A3S1BIK1   A0A0M4E0N2   B4NWD2   A0A1W4W8R2   A6H913   E2BLK6   U3IH47   E9IBP8   A0A1B6D291   A0A0F8ACE5   A0A1W4ZXA6   A0A2I4AP46   A0A0J7NEM6   B4Q694  

PDB

6O9L     E-value=3.19498e-62,     Score=602

KEGG

101741862    K03120 transcription initiation factor TFIID TATA-box-binding protein | (RefSeq) TATA-box-binding pr

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0006352   GO:0003677   GO:0005634   GO:0001003   GO:0042797   GO:0000978   GO:0001092   GO:0005667   GO:0006367   GO:0016251   GO:0001093   GO:0001046   GO:0005700   GO:0006384   GO:0045944   GO:0006366   GO:0000126   GO:0001016   GO:0000979   GO:0008134   GO:0005669   GO:0070898   GO:0003700   GO:0005737   GO:0007369   GO:0006402   GO:0051082   GO:0006487   GO:0006488   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

PANTHER

PTHR10126  

Length:

266

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0777

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08657

outside

1  -  266

 

 

Pi

0.419722

Theta

2.099953

Tajima's D

-2.088636

CLR

1263.416217

CSRT

0.00459977001149943

Interpretation

Possibly Positive selection