SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07322
Pre Gene Modal
BGIBMGA010665
Annotation
hypothetical_protein_KGM_15744_[Danaus_plexippus]
Full name
DNA ligase       + More
Rab3 GTPase-activating protein regulatory subunit      
Location in the cell
PlasmaMembrane   Reliability : 2.987
 

Sequence

CDS
ATGTCTTGTCAAATAGAACAAATTGCTGACTGTGGTGATTTATCTAGTTTAGCACGAGCACTGTTTTTAAGCAGTAATGAAGAACAAAATTGGTTGTCCCAATGTTGTGTTTCTCTATCATCTTGTGGTAACTTGCTTGCTGTTGGCTATCGCAATCGTCTTTGTATACTCACCACACAATGGATTAGTTCGACACAAAGCAATACTTTTTTGATATCTTGGAGTGGAACTTTACCTGCAGATATATCAACAGTATTGGTATTGCCAATTTGCCCATCTCATCATTCTTTCCAGAATGGCCCGGACTGGTTTTGCATTGTAGTTGGATTCAAAAACGGAAACATTGCTTTCCATACAAATACAGGCCATTTATTATTATCTGAAAAAATTGATGAAAAACCAGTATTGAAAATATCTTGTCATACTGGAACATATGGCACATTACCTGATGATGTTCATGTATTGTTTCATACTTGTGAATGTATTATATCAGGAGCAACGCTATTTCCAACACTGCGAAACGCAAAGGCACAATTAGCAAAAGTGCAAGCTGGTATTCAAGACTATTATAGTGTGGATAATCGTAGCATTAGCATAAAGAAATGGTTGTATACTGAACAAGAAGTTGTAAATGATGCTGCAGTTGTGGGATTAGAATTAAAAAATGCCTACGATCATTTACTAGCAGCTTCAACATATGGTGGTTATGATGTATGGTACCGTTCAGTCCCTCCAGTGAATACGTTAATATTAGGAGCTGGGCAGAAACCATATGTAGGTTTCCATTATGCTCTGGAGGGTGGCACTGCGCCCCCTTTACAAGATGTAGCCAGAGCTGTTGCACATAAAATCAAATCTGCTCTACCAGGCTGGCTAGGCGGGGCCTCGACAGAGGGCAGTGTGAGCGCGGCCGAGCCACGGATACGTTCGGAGCCCCTGTCCCTGCGCAGCGGCCTGCACGACGCGCAGAGGCACGGCACCTCCGTCACCGTCTCGCCGGACCGCCGCCTGGCTGCGGTCGTCGACAGCTTCGGCCGAGTCGCCGTACTGGACGTTAACAGAGGACATCTAATTAGACTAATAAAAGGTTGCAGAGACGCACAGTGTGCATTCGTCCAAATTTTTGAATTAGATAACAAGAAACCTCAATTATCTTTTGTTAAAGAAATAAGAAGGGCAATTTTTTTAATTATCTATAATCCCAAGAAAGGATTAATTGATATTCGTCTAATGCAAAGAGGGAACAGAGTAGCCGTTTTTACGGCTACGAAAAACGGCCAACTTTTATACAATACTTGTGGTCTAGTTGGAGCTGATAAAAATTATACCCAAAAAAAACTAAATTTACCAGAATTTCAGTGTGTTTTATTAGATCCAGATGGCAAGCTCAAAAAATTCAGTATTCCATTTTTTTACGCATTAGATGGTGTACATTCCGAAAGATCGAAAGATTTGAACACTTTGAAAGAATTACGTGATCTCATTAAAAACAATACAAGTAACTTTGAAGATTATGAGCAAAAGCTATTTAGTAAAGTATCCGAAATTAAAACATTAGAATTAAAGAAACATTTTCTAGAAATGCTCATTAGAAATTATGATACGTCTCCAACAATTATTATCTCATGTTTGCAAATATTCTGGGATAGCACAAAAGAGGAATCCGTGAGCAGTCAGCAACGTGAAACTCAACACTATTTTGCCAATCTAGGTTTGCTTACTATATTTTATATGTGCATAAATGACGATTGTGAAAGAGATGAAATAGAATTTGCAACTGAATTGCGTAATTTCCTTGGCTTAGAGGTAAATGAAAGTTGTTTGGAAAAAACAATAGACAACCAGAATGAAGACAACAGTTTGTTTCATCTACTAGAGGATGACAGTTGTATTTTGGAAAGATTACTGGTTTTAGCACACGAAAACAATTATAAACACCACGCACGGGTAACTTTTGCCGATACAAGTATGACTACCTATAAAAAATTCATTTCCTGTTTTAATTTAGAAGAAAAATCTAAATATATATCCTTAAAGGCCAATGCTTCGGTGGACAAGCTAAATAACTTAGCCACAATAACGTTCACGTCAATATTCAAATTAAAAAACTTTTCAATGTTGGCTAGTTATGTCAACAAATGCAATATCGACCCGAAAGAGATTGTGAAGCTTTTAATAACACATTTCATGAATATGTCTTTGGAAGAGATAACCATTGACTTAGTCGAGAAATGGACAATGGCCGTATACCACGTGTGTACGGTCACAAAAGACGCTACTAATATTATTTATAATGAAATTTCTCATTGGTGGGAAGACATCCGGAACGTTTTGGTTGAAATGCCTTGTCCCTTACGAAGCATGATAGTTGCAATGGCTTGTAAAGTAATCAGTAGGATTTTGGAAAGTAACAATGCTGAAAGCGACGATGTGTGGGAATCTGTGACCAAAGAAAACGCCAAATGGGGTATTTTAATTGGAAAACTTGAAGATATTTCTATACTCAGTATCGTATTAATGTGTAAAGACACATTTAATGGCAATTCTCTTCCTTCCCTGGAAATGGATGATTTCAATATCAACCTAAAATACATTTATACAAGGGGAAAGGGATCAATTACTGAACTGATTGCCAAGTGGCTATGCAGCATGGGAGCGACTCCTGCGGCGATAGTGGCTAACGAGCTAATGGAAACGATAGCAGCTAACTCTGAACTAACTGATGAGGACGACAATGATGACAACACCACTGATCTCCTGTTTGTTGAAAATAATCGTTATGCCGTTGACGAAAATACAAGAATATTTAAATGGCTCTCGCTTCTGCGCCGTCAATTCCCTCTCAGTACGTCCGCAAATTATATAATTACCAATATGTGTTGGGAATACGCAATGGCATGGCAGAAATGTATGAAGAATACATTGCTTCTTGATGCTGTTATTCACTGTCTTTCTAGTATATCTGACATTCATATACGGTTAGGGTTGTTTTCAATTATTTGGGCAACCTACATCAAACAAATATTTGAAATTAGTTGCCGTTTAGTTAACAAAGTCGGACGTTTGCCAAAAGACCCTCTTTGCTTACAAGATATCAGTTTCGACAATACAACCTTAATCAACTTCTTCCGTTTAACAACATTGTACTTGAATGATTTTCAAAATTGTTTGAAACTGTCATACAGTCATAATAAAAAGAAGGTGGAATTTGAAAAGATTTGGGAAGAAAGTATGCCTTCTTTAGTTGAAGTAACACAACACACAAAGAATGTAAACGATTGTATATTAACTTTAAATTACCAAGTATCTTGCACTCTGTACTATCAATGTCACTTCAATATCAAATTGTCGAAACCCCTCGATGTATTGTTCGACATCGACTATCATTATATTCTGGAAGCACTTACTGGTAATGTTGTGAATAGAGAAATTAATATGAAACCGTCTGAAAAACTCCGGAATCCACGAATGAAGTTTCTAACCAAACTTATAAGAGCATCTGTAGAAACTATAAGTTGTTCTGATGGTCACGAATCATACAGAACATATGATAGTGGTGACTGTCAAATGTGGATTGAAAAAATTTCCATTCTAGCGAACCTGTGGAGCATAGACGACGAATTCATAAAGAGGCAGCAGGTAATCGCTTTATATCACGTGGGTTACGATACACTAGCAGAAAATACAATGAACTCGATCCGTAATCCTGTGCCAGTGCTTGCTCCAATTTTGGCTATTACGATCCAACGTCTTAAACGAAGCCTAGAACATTCTAATAATCAAGCCGAATGGATTGTCAGTATTCCACCACAACTCTACAAACGTTTGCAAAATACTGTCCTGGACACATCAATTCCAGCACATCCGTCACTTTCCACCACAATATTAGTACTCCAAAAGTTGCTGTTTCAATTAAACAAAAAATCTCCTGATCCGGCTCATCTTCAGGATATAAAATTAATAGAGCTGATTATAGAAAACTGTGAAATTATTATTAGAAGAAAATTGTAA
Protein
MSCQIEQIADCGDLSSLARALFLSSNEEQNWLSQCCVSLSSCGNLLAVGYRNRLCILTTQWISSTQSNTFLISWSGTLPADISTVLVLPICPSHHSFQNGPDWFCIVVGFKNGNIAFHTNTGHLLLSEKIDEKPVLKISCHTGTYGTLPDDVHVLFHTCECIISGATLFPTLRNAKAQLAKVQAGIQDYYSVDNRSISIKKWLYTEQEVVNDAAVVGLELKNAYDHLLAASTYGGYDVWYRSVPPVNTLILGAGQKPYVGFHYALEGGTAPPLQDVARAVAHKIKSALPGWLGGASTEGSVSAAEPRIRSEPLSLRSGLHDAQRHGTSVTVSPDRRLAAVVDSFGRVAVLDVNRGHLIRLIKGCRDAQCAFVQIFELDNKKPQLSFVKEIRRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLPEFQCVLLDPDGKLKKFSIPFFYALDGVHSERSKDLNTLKELRDLIKNNTSNFEDYEQKLFSKVSEIKTLELKKHFLEMLIRNYDTSPTIIISCLQIFWDSTKEESVSSQQRETQHYFANLGLLTIFYMCINDDCERDEIEFATELRNFLGLEVNESCLEKTIDNQNEDNSLFHLLEDDSCILERLLVLAHENNYKHHARVTFADTSMTTYKKFISCFNLEEKSKYISLKANASVDKLNNLATITFTSIFKLKNFSMLASYVNKCNIDPKEIVKLLITHFMNMSLEEITIDLVEKWTMAVYHVCTVTKDATNIIYNEISHWWEDIRNVLVEMPCPLRSMIVAMACKVISRILESNNAESDDVWESVTKENAKWGILIGKLEDISILSIVLMCKDTFNGNSLPSLEMDDFNINLKYIYTRGKGSITELIAKWLCSMGATPAAIVANELMETIAANSELTDEDDNDDNTTDLLFVENNRYAVDENTRIFKWLSLLRRQFPLSTSANYIITNMCWEYAMAWQKCMKNTLLLDAVIHCLSSISDIHIRLGLFSIIWATYIKQIFEISCRLVNKVGRLPKDPLCLQDISFDNTTLINFFRLTTLYLNDFQNCLKLSYSHNKKKVEFEKIWEESMPSLVEVTQHTKNVNDCILTLNYQVSCTLYYQCHFNIKLSKPLDVLFDIDYHYILEALTGNVVNREINMKPSEKLRNPRMKFLTKLIRASVETISCSDGHESYRTYDSGDCQMWIEKISILANLWSIDDEFIKRQQVIALYHVGYDTLAENTMNSIRNPVPVLAPILAITIQRLKRSLEHSNNQAEWIVSIPPQLYKRLQNTVLDTSIPAHPSLSTTILVLQKLLFQLNKKSPDPAHLQDIKLIELIIENCEIIIRRKL

Summary

Description
Probable regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP (By similarity).
Catalytic Activity
ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.
Subunit
The Rab3 GTPase-activating complex is a heterodimer composed of CG31935 and Rab3-GAP.
Similarity
Belongs to the ATP-dependent DNA ligase family.
Belongs to the Rab3-GAP regulatory subunit family.
Keywords
Complete proteome   Cytoplasm   GTPase activation   Phosphoprotein   Reference proteome  
Feature
chain  Rab3 GTPase-activating protein regulatory subunit
EC Number
6.5.1.1
EMBL
NWSH01004441    PCG65105.1    RSAL01000597    RVE41337.1    AGBW02010564    OWR48311.1    + More
KQ459603    KPI92650.1    KQ460845    KPJ12069.1    JTDY01000955    KOB75289.1    ODYU01000758    SOQ36028.1    PCG65104.1    GEZM01006579    JAV95711.1    GEZM01006578    JAV95712.1    KB631008    KB632204    ERL83997.1    ERL90088.1    KQ971372    EFA10326.1    APGK01043446    KB741014    ENN75474.1    NEVH01006721    PNF37325.1    DS231826    EDS28712.1    GFDF01003505    JAV10579.1    JXUM01093231    JXUM01093232    KQ564043    KXJ72873.1    LJIG01022683    KRT79269.1    CH477602    EAT38427.1    GDUN01000773    JAN95146.1    AJVK01000819    AJVK01000820    QOIP01000005    RLU22590.1    LBMM01001228    KMQ96685.1    KZ288363    PBC26930.1    GEDC01009620    JAS27678.1    AXCM01000956    PYGN01000174    PSN52085.1    GL761987    EFZ22535.1    AJWK01020170    KQ434899    KZC10899.1    KQ414617    KOC68340.1    APCN01000881    AAAB01008987    EAL38577.4    NNAY01000360    OXU28898.1    KQ981215    KYN44625.1    ADTU01027812    GANO01000437    JAB59434.1    KQ979679    KYN19865.1    AXCN02001530    GL888695    EGI58384.1    GBYB01001709    GBYB01001717    GBYB01006672    JAG71476.1    JAG71484.1    JAG76439.1    KQ982706    KYQ51818.1    GAMC01007556    JAB98999.1    GBXI01013560    GBXI01010111    JAD00732.1    JAD04181.1    GAKP01017869    JAC41083.1    GL451323    EFN79470.1    GFDF01003714    JAV10370.1    CH964182    EDW80240.1    GEDC01021251    JAS16047.1    AE014134    BT016089    AF145682    OUUW01000006    SPP81443.1    SPP81444.1    CH954177    EDV58830.1    CM000157    EDW88151.1    CM000361    EDX04770.1    CH480831    EDW45885.1    PNF37324.1    CM002910    KMY89870.1    CH933807    EDW11276.1    CCAG010001456    CH379059    EAL34218.2    JXJN01021143    CH902624    EDV33249.1    JXUM01047743    JXUM01047744    JXUM01047745    JXUM01047746    JXUM01047747    KQ561531    KXJ78251.1    CH479187    EDW39870.1    GAMC01007555    JAB99000.1    GL439655    EFN66870.1    GGLE01001320    MBY05446.1    KL448134    KFO80827.1    CH916368    EDW04033.1    KK663996    KFQ10018.1    HADX01003740    SBP25972.1    CABD030008962    CABD030008963    CABD030008964    CABD030008965    CABD030008966    AJFE02020675    AJFE02020676    AJFE02020677   
Pfam
PF14655   RAB3GAP2_N        + More
PF14656   RAB3GAP2_C
PF01068   DNA_ligase_A_M
PF04679   DNA_ligase_A_C
PF04675   DNA_ligase_A_N
Interpro
IPR029257   RAB3GAP2_C        + More
IPR026059   Rab3-gap_reg       
IPR032839   RAB3GAP_N       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR036322   WD40_repeat_dom_sf       
IPR000977   DNA_ligase_ATP-dep       
IPR012308   DNA_ligase_ATP-dep_N       
IPR012309   DNA_ligase_ATP-dep_C       
IPR036599   DNA_ligase_N_sf       
IPR012310   DNA_ligase_ATP-dep_cent       
IPR012340   NA-bd_OB-fold       
IPR016059   DNA_ligase_ATP-dep_CS       
SUPFAM
SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF117018   SSF117018       
SSF50249   SSF50249       
Gene 3D

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
1336
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.191400000000001
Exp number, first 60 AAs:
0.01355
Total prob of N-in:
0.00623
outside
1  -  1336
 
 

Population Genetic Test Statistics

Pi
4.018947
Theta
7.935772
Tajima's D
-1.67836
CLR
1.309422
CSRT
0.0386480675966202
Interpretation
Uncertain
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