Gene

KWMTBOMO07321

Pre Gene Modal

BGIBMGA010623

Annotation

PREDICTED:_transcription_initiation_factor_TFIID_subunit_7-like_[Bombyx_mori]

Location

Bomo_Chr12(-):10603731-10605041      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.425

CDS

ATGAATAGAGACAAAAGAGATCCTGATTTTCCAGTTGAGTTAGAATCTCAATTTCTATTGAGACTACCAGAAGAACCGGCCAAAGCTCTCAGAGAAGCCTTACAAACAGGAGAAAATTTCAAAAACAGGTTGACAATACAAATGGATAATGATATGAGAAATGGAGAAGTACGATTAGATCATTGGTTACTTCATGGGAAAGTATACGACTTACCAACTATTGTCGAGTCGCTCAAAACGATTGACAGAAAAAGTGTTTACAAAACCGCAGACATTTGTCAAATAATGATTTGTAAAGATGAAATCGACCCATCGTCCACCGAAGAAGAATCTCCAGCAAAAAACAAAAAAAAAGATTCTTTCAAAGTTGATAAAAAATTCTTGTGGCCTCATGGTATAACTCCGCCAACAAAAAATGTCCGTAAAAGGCGTTTTAGGAAAACTTTAAAAAAGAAATGTGTAGAAGCTCCTGAAATTGAAAAAGAAGTTAAAAGACTTTTAAGAGCCGATAATGAAGCAGTAAGTTTTACATGGGAAGTGATTCAGGAGGAGGATGATCATTCTTCTAAACCAGAAACAGTCAATATTACAAAAACGGAGAAAGCAAAAACAAAGAAAGGACACAATGTAAAAGCAGAAATCGCTAATCAATCATCTTCAAAAGTTGAAGATATATTTGGTGGAGCTTTAAGTGATAGTGATTTAGAAGATGAAAATATCAATGTAGATGTTGAAGACAGTAGAATGTCTTCATATGATGACCAATACTCTGAAGCTTCAGTCCAAGGTTCAGATCGTTTTGCAACACAGTTTAATTCTGACATGTTTTACTACTCACAAATGTTAAACCCTGAACGAGCTGATAATGACACTGCTGAAAAACGAAAAGTTGTAGCTCATAAAAGTGGTCTGCAGTACTCTGTTGATGATTATTTAAAAGCACCAAGTGAAACTGGGGTAAAAATGCAACAGTTGGCAACTGAATTGGAAGAACTGAAACAACGCCGCCAAAGAACGCAACTGGAGATAGCTGGAATGGAAAATATGACTTTAAGACAAAGATTTCAAGAGATACTCCTCACTATCAACAAGGAAATAATTTATAAAGAAATGGAATACCAAAAATTACTTAAACAGTAG

Protein

MNRDKRDPDFPVELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPAKNKKKDSFKVDKKFLWPHGITPPTKNVRKRRFRKTLKKKCVEAPEIEKEVKRLLRADNEAVSFTWEVIQEEDDHSSKPETVNITKTEKAKTKKGHNVKAEIANQSSSKVEDIFGGALSDSDLEDENINVDVEDSRMSSYDDQYSEASVQGSDRFATQFNSDMFYYSQMLNPERADNDTAEKRKVVAHKSGLQYSVDDYLKAPSETGVKMQQLATELEELKQRRQRTQLEIAGMENMTLRQRFQEILLTINKEIIYKEMEYQKLLKQ

Uniprot

A0A1E1WT79   A0A2A4JGW5   A0A2W1BVY1   A0A2H1X1V2   S4PMS8   A0A212ENE8   + More
A0A194PGX2   A0A194R2R1   A0A194QUD4   A0A194Q4Y8   A0A1E1WBU4   H9ITR6   A0A1B6EID4   A0A1B6LC64   A0A0L7KPL3   A0A3L8DL12   A0A2J7R1T1   A0A0J7NRW8   A0A088A6F2   A0A2A3E4Z5   F4X6V4   A0A158NFW7   A0A151XC47   A0A195B2W4   A0A195CI57   A0A195F1C1   E1ZYY7   D6WF61   A0A1B6BZ07   A0A2P8Y3Y0   E2BX26   E9J663   A0A1W4XHG3   A0A0M8ZSD6   A0A026WPP9   A0A067R178   A0A2J7R1S5   A0A0P4VVY4   R4FNG6   A0A195E7Q0   A0A154PNM8   A0A212FDT1   A0A1B6JFB1   U5ESV5   A0A1Y1JZN5   E0VPI1   A0A0L7R8H4   A0A146M171   A0A0K8T0F4   A0A0A9Z2S3   A0A0A9Z880   A0A0K8SZJ7   A0A1B0D6A0   B0WP10   A0A1L8DI89   A0A0T6AXY7   A0A023ETI8   A0A336MRT0   A0A084WAJ4   A0A336MW45   N6TJN2   A0A182GHT8   A0A1Q3FBS3   K7JNJ1   A0A0K8TLX4   W5JPH0   A0A182HYG6   Q7Q8X9   A0A182TJ73   A0A2M4AU20   A0A182VEP5   A0A1S4H549   A0A2M4AUA0   A0A182JQQ5   A0A182VT52   A0A182LZ90   A0A182FTG3   A0A182NDD5   A0A182YFA1   A0A182PUG9   A0A182IV14   A0A182WUX2   A0A232EN49   A0A0A1WDY4   A0A182RIU9   A0A1B0CR90   A0A182Q7F5   A0A1L8DGJ4   A0A1I8MCE4   E9GKY0   A0A034WDS1   A0A0P5Y761   A0A0K8U386   A0A0P6D340   A0A0P5R374   A0A0P5S0H4   A0A0P5RRW2   A0A0P5PZ57   A0A0P5S418  

Pubmed

28756777    23622113    22118469    26354079    19121390    26227816    + More
30249741    21719571    21347285    20798317    18362917    19820115    29403074    21282665    24508170    24845553    27129103    28004739    20566863    26823975    25401762    24945155    24438588    23537049    26483478    20075255    26369729    20920257    23761445    12364791    25244985    28648823    25830018    25315136    21292972    25348373   

EMBL

GDQN01001018    JAT90036.1    NWSH01001499    PCG71059.1    KZ149945    PZC76806.1    + More
ODYU01012810    SOQ59301.1    GAIX01003400    JAA89160.1    AGBW02013671    OWR42999.1    KQ459603    KPI92641.1    KQ460845    KPJ12078.1    KQ461108    KPJ09138.1    KQ459463    KPJ00603.1    GDQN01006600    JAT84454.1    BABH01006912    GECZ01032107    JAS37662.1    GEBQ01024539    GEBQ01018716    JAT15438.1    JAT21261.1    JTDY01007389    KOB65243.1    QOIP01000006    RLU21107.1    NEVH01008202    PNF34782.1    LBMM01002177    KMQ95180.1    KZ288405    PBC26151.1    GL888818    EGI57886.1    ADTU01014819    KQ982314    KYQ57919.1    KQ976662    KYM78539.1    KQ977754    KYN00112.1    KQ981864    KYN34263.1    GL435242    EFN73677.1    KQ971327    EFA00911.1    GEDC01031049    JAS06249.1    PYGN01000956    PSN38949.1    GL451202    EFN79745.1    GL768221    EFZ11767.1    KQ435922    KOX68559.1    KK107135    EZA58032.1    KK852818    KDR15694.1    PNF34783.1    GDKW01000364    JAI56231.1    ACPB03000489    GAHY01001304    JAA76206.1    KQ979568    KYN20872.1    KQ434998    KZC13327.1    AGBW02008997    OWR51909.1    GECU01009776    JAS97930.1    GANO01003073    JAB56798.1    GEZM01098826    JAV53731.1    DS235366    EEB15287.1    KQ414632    KOC67187.1    GDHC01005634    JAQ12995.1    GBRD01007146    JAG58675.1    GBHO01004037    GBHO01004033    GBHO01004031    GBHO01004030    GDHC01014467    JAG39567.1    JAG39571.1    JAG39573.1    JAG39574.1    JAQ04162.1    GBHO01004036    GBHO01004035    GBHO01004034    GBHO01004032    GDHC01012281    JAG39568.1    JAG39569.1    JAG39570.1    JAG39572.1    JAQ06348.1    GBRD01007147    JAG58674.1    AJVK01025851    DS232018    EDS32037.1    GFDF01007997    JAV06087.1    LJIG01022576    KRT79844.1    GAPW01001884    JAC11714.1    UFQT01002304    SSX33172.1    ATLV01022200    KE525330    KFB47238.1    UFQT01003306    SSX34834.1    APGK01022613    KB740436    KB632373    ENN80659.1    ERL93776.1    JXUM01064747    KQ562313    KXJ76165.1    GFDL01010010    JAV25035.1    GDAI01002460    JAI15143.1    ADMH02000540    ETN66016.1    APCN01005907    AAAB01008933    EAA09978.4    GGFK01010984    MBW44305.1    GGFK01011023    MBW44344.1    AXCM01000018    NNAY01003212    OXU19785.1    GBXI01017416    JAC96875.1    AJWK01024489    AXCN02001767    GFDF01008599    JAV05485.1    GL732550    EFX79758.1    GAKP01006113    JAC52839.1    GDIP01061964    LRGB01002190    JAM41751.1    KZS08641.1    GDHF01031549    JAI20765.1    GDIQ01083611    JAN11126.1    GDIQ01106103    JAL45623.1    GDIQ01098700    JAL53026.1    GDIQ01106102    JAL45624.1    GDIQ01128444    JAL23282.1    GDIQ01093345    JAL58381.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000005204    UP000037510    + More
UP000279307    UP000235965    UP000036403    UP000005203    UP000242457    UP000007755    UP000005205    UP000075809    UP000078540    UP000078542    UP000078541    UP000000311    UP000007266    UP000245037    UP000008237    UP000192223    UP000053105    UP000053097    UP000027135    UP000015103    UP000078492    UP000076502    UP000009046    UP000053825    UP000092462    UP000002320    UP000030765    UP000019118    UP000030742    UP000069940    UP000249989    UP000002358    UP000000673    UP000075840    UP000007062    UP000075902    UP000075903    UP000075881    UP000075920    UP000075883    UP000069272    UP000075884    UP000076408    UP000075885    UP000075880    UP000076407    UP000215335    UP000075900    UP000092461    UP000075886    UP000095301    UP000000305    UP000076858   

PRIDE

H9ITR6   

Pfam

PF04658   TAFII55_N        + More
PF11027   DUF2615
PF00733   Asn_synthase
PF13537   GATase_7

Interpro

IPR037817   TAF7        + More
IPR006751   TAFII55_prot_cons_reg       
IPR020309   Uncharacterised_CD034/YQF4       
IPR014729   Rossmann-like_a/b/a_fold       
IPR001962   Asn_synthase       
IPR017932   GATase_2_dom       
IPR029055   Ntn_hydrolases_N       

SUPFAM

SSF56235   SSF56235       

Gene 3D

3.40.50.620     3.60.20.10    

CDD

cd08047  TAF7
cd01991  Asn_Synthase_B_C

ProteinModelPortal

A0A1E1WT79   A0A2A4JGW5   A0A2W1BVY1   A0A2H1X1V2   S4PMS8   A0A212ENE8   + More
A0A194PGX2   A0A194R2R1   A0A194QUD4   A0A194Q4Y8   A0A1E1WBU4   H9ITR6   A0A1B6EID4   A0A1B6LC64   A0A0L7KPL3   A0A3L8DL12   A0A2J7R1T1   A0A0J7NRW8   A0A088A6F2   A0A2A3E4Z5   F4X6V4   A0A158NFW7   A0A151XC47   A0A195B2W4   A0A195CI57   A0A195F1C1   E1ZYY7   D6WF61   A0A1B6BZ07   A0A2P8Y3Y0   E2BX26   E9J663   A0A1W4XHG3   A0A0M8ZSD6   A0A026WPP9   A0A067R178   A0A2J7R1S5   A0A0P4VVY4   R4FNG6   A0A195E7Q0   A0A154PNM8   A0A212FDT1   A0A1B6JFB1   U5ESV5   A0A1Y1JZN5   E0VPI1   A0A0L7R8H4   A0A146M171   A0A0K8T0F4   A0A0A9Z2S3   A0A0A9Z880   A0A0K8SZJ7   A0A1B0D6A0   B0WP10   A0A1L8DI89   A0A0T6AXY7   A0A023ETI8   A0A336MRT0   A0A084WAJ4   A0A336MW45   N6TJN2   A0A182GHT8   A0A1Q3FBS3   K7JNJ1   A0A0K8TLX4   W5JPH0   A0A182HYG6   Q7Q8X9   A0A182TJ73   A0A2M4AU20   A0A182VEP5   A0A1S4H549   A0A2M4AUA0   A0A182JQQ5   A0A182VT52   A0A182LZ90   A0A182FTG3   A0A182NDD5   A0A182YFA1   A0A182PUG9   A0A182IV14   A0A182WUX2   A0A232EN49   A0A0A1WDY4   A0A182RIU9   A0A1B0CR90   A0A182Q7F5   A0A1L8DGJ4   A0A1I8MCE4   E9GKY0   A0A034WDS1   A0A0P5Y761   A0A0K8U386   A0A0P6D340   A0A0P5R374   A0A0P5S0H4   A0A0P5RRW2   A0A0P5PZ57   A0A0P5S418  

PDB

6MZM     E-value=4.57108e-33,     Score=353

KEGG

101741347    K03132 transcription initiation factor TFIID subunit 7 | (RefSeq) transcription initiation factor TF

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0005669   GO:0006367   GO:0003743   GO:0051123   GO:0003713   GO:0008134   GO:0044212   GO:0006357   GO:0035035   GO:0016021   GO:0004066   GO:0006529   GO:0003975   GO:0006487   GO:0006488   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

PANTHER

PTHR12228  

Length:

379

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03548

outside

1  -  379

 

 

Pi

3.496948

Theta

8.091429

Tajima's D

-1.60111

CLR

2.12075

CSRT

0.0441977901104945

Interpretation

Uncertain