Silkworm Genome Informatics Database

Gene

KWMTBOMO07319

Annotation

hypothetical_protein_M514_07281_[Trichuris_suis]

Location

Bomo_Chr12(-):10588928-10592471 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.609

CDS

ATGCATTGTTTACGCTGTGGAAAGAAAGAACGGCACAGCCTATCACAGTGTTCAGCCAAGGACCATATTTGTAAAGAATGTAACACGAAGGCACACTTTGAGAGTTGTTGCATTAAGTCTGGACGGGCATACATCAGCTATACAAAAGGGAGCCGAAAATCAGTTAAAAAAATAACAAGACATCATAAGTCCTCAACTTCATCATCATCTATCAGTAATAACGAGGAAGAGAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGCATCAATGACATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTATGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGTAACACCAACTTAAAAACAAAGGGAATTACAAAAGTAACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCTAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAACCTATGACTCTTAAACAAATATTGGATAATAATGTACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGTTAGATCGTCTGATCTCAGAAGGGATTGTGGAAAAAGTAGATCCTAATGTTACACCTATTGAATGGGCTACACCCACAGTTAACATTTTGAAATCTACAGGGGAAGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAGCTTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAAATTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACACCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAATCTATCAGAACAGTTACTTATGAAAACAACTTCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTCATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGTTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAATCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGACGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAACATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACAAAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACACGCTGATCACATCAGGCCACGCGAGTCCTCCACCTTAGAAACCCCGAGGAATGAAAGGGCGCATTCTTCTATGCTGCCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAACAAAAGGCTAACTAAAAACAAGAATTCGGCAGCAGTACCATTACATACACCGCGGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTCCACAGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MHCLRCGKKERHSLSQCSAKDHICKECNTKAHFESCCIKSGRAYISYTKGSRKSVKKITRHHKSSTSSSSISNNEEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKPMTLKQILDNNVQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIERELDRLISEGIVEKVDPNVTPIEWATPTVNILKSTGEVRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANDTKKCIASSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKIDQYLRGTKFNLVTDHKPLIHIMGAHRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTSKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKQKYSYIVSTPGGLEKRRHADHIRPRESSTLETPRNERAHSSMLPATASPDIGMETTINKRLTKNKNSAAVPLHTPRSPTNVQISPNSPPQHSKLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

W4LMH6 A2TGR5 A0A2G8LRL0 A0A1S3DTM5 A0A3P8VSE7 A2TGR4 + More
A0A1S3DTG6 A0A1S3DUJ5 A0A2G8LB01 A0A146LWN6

Pubmed

24476823 17694394 29023486 24487278 26823975

EMBL

AZHX01001899 ETW98900.1 EF199622 ABM90393.1 MRZV01000005 PIK62810.1 + More
EF199621 ABM90392.1 MRZV01000143 PIK57404.1 GDHC01007869 JAQ10760.1

Proteomes

UP000019140 UP000230750 UP000079169 UP000265120

Pfam

PF00665   rve        + More
PF17917   RT_RNaseH
PF00078   RVT_1
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2

Interpro

IPR001584   Integrase_cat-core        + More
IPR012337   RNaseH-like_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR041577   RT_RNaseH_2
IPR021109   Peptidase_aspartic_dom_sf
IPR034128   K02A2.6-like
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR001995   Peptidase_A2_cat

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

3.30.420.10 2.40.70.10

CDD

cd05484 retropepsin_like_LTR_2

ProteinModelPortal

W4LMH6 A2TGR5 A0A2G8LRL0 A0A1S3DTM5 A0A3P8VSE7 A2TGR4 + More
A0A1S3DTG6 A0A1S3DUJ5 A0A2G8LB01 A0A146LWN6

PDB

5UOQ E-value=3.74274e-17, Score=220

KEGG

105842438 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074 GO:0003676 GO:0008270 GO:0003975 GO:0006487 GO:0006488 GO:0007156 GO:0008237 GO:0043401 GO:0003707 GO:0051537

Length:

958

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00163

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00011

outside

1 - 958

Pi

13.054361

Theta

23.391528

Tajima's D

-1.473606

CLR

127.27553

CSRT

0.0633468326583671

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree