Gene

KWMTBOMO07317

Pre Gene Modal

BGIBMGA010625

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_54_[Bombyx_mori]

Location

Bomo_Chr12(-):10575195-10578581      View in EpiBrowser

Full name

Vacuolar protein sorting-associated protein 54      

Alternative Name

Protein scattered

Location in the cell

Nuclear   Reliability : 2.953

CDS

ATGGAAGATGTTAATGGGAGTGATAATGAAGAGATTTGGTCAGCTGAAGAATTGACATCTATTGAAGACAAATTGAAAAAAATGATTGTTTCATTGTCAGATTACTGCAATGAAAGATGTGCTAACCTAATTGTAACTAAAACAGACAAAGATTATGTGTGTTCTGATATGTCACAGTTATCTCTCCTATCAAATTTGATTAAAGAATTTTGCACCAAATGTGAGGATGTAACCGGATATTGTAGTAATGCCATGAATTTGGCTCTAAGGAGCTTTGCTATGAAGTATATACAGACACTTCACACTGAACGCAGATCTCAATTAACAGCTTCTCTAAATGCTGAACGATGGAAAACTGCAGATGTTCCATATGAATTGCAAAGTGCAATCACAAAAATATGTGAAATTCAAGAAATACCTCCTAATTTACTGTATGAAAGTGGGAAACCAGACGGAAAATATCTTTTTATAAACAAAGAAAGCTATGCTCTGGTAGGGACAGTTCAACTACTTATAAAAATTTTATTGGAATACTGTGATGCAACCAGACAATCTCCCATTATAGTTCAGTATTTAGTTCATTGTATGTTAGAATTATTAAGATTGTTTAATTCTCGGTGCTGCCAACTTGTTCTCGGTGCAGGGGCAATACAAAGTGCTGGACTTAAAACTATTTCTACATCCAATTTAGCTCTAGTATCTCGATCTTTACAGGTTATATTATGGTTTTTACCTATGATAAAACAGCTGTTAGAGAAAATACATTCTTCTGAGGTATCATTGAGCGGTTTTGTTGCTATTGAGAGTGATATTGCTAGCCATAAACAGGAAATAGAAAATAAGATTTGCTTAATTGTAAGTAATATGTTATGTTCTCAATTAACAGGGTGGGATGCAAAGCCCCCAGTTCCTTCTCAAACATTCCGCAATATTTCAAAACATTTAGTGAAGTTACATGAAGCATTAATTGATATTTTGCCACCTGAACAAATAAAGTTTATATACAAACGAGTACATGATAATTTTAAAGATAAATTAAGAGAACAACTAATTAAAATGAATATAGTTGCTAATGGAAGCCCCCAACATGGTGTAGTGACTTCTGAATTGACATTTTACTTACAAACTCTAAAGACACTCAGAGTTATAAACGATAATGATGCAGAAGACAATATACTATATGACGTTTGGTTAAATTAA

Protein

MEDVNGSDNEEIWSAEELTSIEDKLKKMIVSLSDYCNERCANLIVTKTDKDYVCSDMSQLSLLSNLIKEFCTKCEDVTGYCSNAMNLALRSFAMKYIQTLHTERRSQLTASLNAERWKTADVPYELQSAITKICEIQEIPPNLLYESGKPDGKYLFINKESYALVGTVQLLIKILLEYCDATRQSPIIVQYLVHCMLELLRLFNSRCCQLVLGAGAIQSAGLKTISTSNLALVSRSLQVILWFLPMIKQLLEKIHSSEVSLSGFVAIESDIASHKQEIENKICLIVSNMLCSQLTGWDAKPPVPSQTFRNISKHLVKLHEALIDILPPEQIKFIYKRVHDNFKDKLREQLIKMNIVANGSPQHGVVTSELTFYLQTLKTLRVINDNDAEDNILYDVWLN

Description

May be involved in retrograde transport from early and late endosomes to late Golgi (By similarity). Required during spermatogenesis for sperm individualization.

Similarity

Belongs to the VPS54 family.

Keywords

Coiled coil   Complete proteome   Developmental protein   Differentiation   Golgi apparatus   Phosphoprotein   Protein transport   Reference proteome   Spermatogenesis   Transport  

Feature

chain  Vacuolar protein sorting-associated protein 54

Uniprot

A0A0L7L7V6   A0A2A4J5L8   A0A2H1V2S6   A0A3S2TLN5   A0A212F3K1   A0A194R2Q7   + More
A0A194PNE8   A0A1L8DVG9   B0WC20   A0A182H6U5   A0A182GWR3   A0A1Q3EX00   A0A0P6J3Y7   A0A1S4EYY6   A0A1J1I403   A0A182ISM8   A0A1B0CJL3   A0A1I8NBJ3   A0A182NTX3   E2C760   Q7Q4D8   A0A0L0C8E9   A0A034V9C9   U5EVN8   D6X241   A0A1I8PN64   A0A0T6B5V4   A0A0A1WT42   W8BBJ1   U4UE23   A0A0K8V6E5   A0A0K8WEU1   A0A1B0D2T3   A0A1W4WXB3   A0A0C9RDR0   A0A1Y1LRW8   A0A336LPB0   A0A1W4VHX0   A0A3B0JUV5   B4GKS6   Q29PH7   A0A0L7RH22   B4M9R9   A0A195FIM1   B3MUU3   A0A0J7L806   A0A151WTU9   A0A195DM28   B3N7Z8   A0A195BTB0   B4N1D6   E2AY30   A0A0J9R030   B4NY36   A0A1A9W025   B4HYX5   Q9VLC0   B4JPV9   A0A026WC72   A0A158P2E0   F4WUR4   A0A2J7QXU0   A0A1B0A4Z7   K7IWH9   E9IGC2   B4KIQ3   A0A0M5J3Z8   A0A195D384   A0A310S5Y0   A0A1B0FFB5   A0A1A9V9L8   A0A088A9H6   N6U2S3   A0A1A9XGV2   A0A1B0BJH1   A0A2A3EGK3   A0A0M9A7P7   A0A067QV92   R7UWE0   K1Q8F6   A0A087UES5   T1J950   A0A2D4LVJ8   A0A1B6DGB4   A0A210PHC0   A0A2D4PKF3   G3HDQ0   E9GYI9   A0A2D4HCZ4   A0A2D4HD00   A0A0N8A5N3   A0A2D4PKE5   S4RLY6   A0A0P6I3K3   A0A164TR75   A0A2D4LUI5   A0A2D4LUZ1   A0A1W7RBQ9  

Pubmed

26227816    22118469    26354079    26483478    26999592    25315136    + More
20798317    12364791    26108605    25348373    18362917    19820115    25830018    24495485    23537049    28004739    17994087    15632085    22936249    17550304    10731132    12537572    12537569    9550716    18327897    24508170    30249741    21347285    21719571    20075255    21282665    24845553    23254933    22992520    28812685    21804562    21292972    26358130   

EMBL

JTDY01002364    KOB71573.1    NWSH01003090    PCG66968.1    ODYU01000383    SOQ35076.1    + More
RSAL01000063    RVE49484.1    AGBW02010564    OWR48316.1    KQ460845    KPJ12073.1    KQ459603    KPI92645.1    GFDF01003653    JAV10431.1    DS231884    EDS43080.1    JXUM01114915    KQ565831    KXJ70621.1    JXUM01093988    JXUM01093989    JXUM01093990    JXUM01093991    JXUM01093992    JXUM01093993    JXUM01093994    KQ564095    KXJ72804.1    GFDL01015213    JAV19832.1    GDUN01001103    JAN94816.1    CVRI01000037    CRK93598.1    AJWK01014705    AJWK01014706    GL453340    EFN76173.1    AAAB01008964    EAA12219.3    JRES01000864    KNC27679.1    GAKP01019823    JAC39129.1    GANO01001780    JAB58091.1    KQ971371    EFA09922.2    LJIG01009604    KRT82748.1    GBXI01012694    GBXI01003674    JAD01598.1    JAD10618.1    GAMC01012162    JAB94393.1    KB632100    ERL88826.1    GDHF01026324    GDHF01018016    JAI25990.1    JAI34298.1    GDHF01002697    JAI49617.1    AJVK01002795    AJVK01002796    AJVK01002797    AJVK01002798    AJVK01002799    AJVK01002800    GBYB01007242    GBYB01011237    JAG77009.1    JAG81004.1    GEZM01048806    JAV76393.1    UFQT01000093    SSX19625.1    OUUW01000010    SPP85885.1    CH479184    EDW37242.1    CH379058    EAL34316.1    KQ414594    KOC70138.1    CH940654    EDW57945.1    KQ981523    KYN40248.1    CH902624    EDV33008.1    LBMM01000329    KMR01092.1    KQ982753    KYQ51197.1    KQ980734    KYN13945.1    CH954177    EDV58359.1    KQ976408    KYM91198.1    CH963920    EDW78073.1    GL443762    EFN61626.1    CM002910    KMY89259.1    CM000157    EDW88638.1    CH480818    EDW52255.1    AE014134    AY061309    CH916372    EDV98939.1    KK107323    QOIP01000002    EZA52629.1    RLU25806.1    ADTU01007165    GL888375    EGI62061.1    NEVH01009372    PNF33403.1    GL762997    EFZ20380.1    CH933807    EDW12409.1    CP012525    ALC44468.1    KQ976885    KYN07357.1    KQ769058    OAD53014.1    CCAG010014241    APGK01041782    KB740997    ENN75870.1    JXJN01015395    KZ288254    PBC30838.1    KQ435730    KOX77559.1    KK853336    KDR08332.1    AMQN01005993    KB297336    ELU10634.1    JH817970    EKC25155.1    KK119496    KFM75864.1    JH431970    IACM01046221    LAB24713.1    GEDC01012565    JAS24733.1    NEDP02076698    OWF35898.1    IACN01072218    LAB58504.1    JH000301    EGW00356.1    GL732575    EFX75401.1    IACK01012036    LAA69830.1    IACK01012034    LAA69823.1    GDIP01180073    JAJ43329.1    IACN01072217    LAB58502.1    GDIQ01143161    GDIQ01011899    JAN82838.1    LRGB01001763    KZS10677.1    IACM01046222    LAB24715.1    IACM01046224    LAB24718.1    GDAY02002889    JAV48578.1   

Proteomes

UP000037510    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000002320    UP000069940    UP000249989    UP000183832    UP000075880    UP000092461    UP000095301    UP000075884    UP000008237    UP000007062    UP000037069    UP000007266    UP000095300    UP000030742    UP000092462    UP000192223    UP000192221    UP000268350    UP000008744    UP000001819    UP000053825    UP000008792    UP000078541    UP000007801    UP000036403    UP000075809    UP000078492    UP000008711    UP000078540    UP000007798    UP000000311    UP000002282    UP000091820    UP000001292    UP000000803    UP000001070    UP000053097    UP000279307    UP000005205    UP000007755    UP000235965    UP000092445    UP000002358    UP000009192    UP000092553    UP000078542    UP000092444    UP000078200    UP000005203    UP000019118    UP000092443    UP000092460    UP000242457    UP000053105    UP000027135    UP000014760    UP000005408    UP000054359    UP000242188    UP000001075    UP000000305    UP000245300    UP000076858   

PRIDE

Q9VLC0    G3HDQ0   

Pfam

PF10475   Vps54_N        + More
PF07928   Vps54

Interpro

IPR019515   VPS54_N        + More
IPR012501   Vps54_C       
IPR039745   Vps54       
IPR027417   P-loop_NTPase       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A0L7L7V6   A0A2A4J5L8   A0A2H1V2S6   A0A3S2TLN5   A0A212F3K1   A0A194R2Q7   + More
A0A194PNE8   A0A1L8DVG9   B0WC20   A0A182H6U5   A0A182GWR3   A0A1Q3EX00   A0A0P6J3Y7   A0A1S4EYY6   A0A1J1I403   A0A182ISM8   A0A1B0CJL3   A0A1I8NBJ3   A0A182NTX3   E2C760   Q7Q4D8   A0A0L0C8E9   A0A034V9C9   U5EVN8   D6X241   A0A1I8PN64   A0A0T6B5V4   A0A0A1WT42   W8BBJ1   U4UE23   A0A0K8V6E5   A0A0K8WEU1   A0A1B0D2T3   A0A1W4WXB3   A0A0C9RDR0   A0A1Y1LRW8   A0A336LPB0   A0A1W4VHX0   A0A3B0JUV5   B4GKS6   Q29PH7   A0A0L7RH22   B4M9R9   A0A195FIM1   B3MUU3   A0A0J7L806   A0A151WTU9   A0A195DM28   B3N7Z8   A0A195BTB0   B4N1D6   E2AY30   A0A0J9R030   B4NY36   A0A1A9W025   B4HYX5   Q9VLC0   B4JPV9   A0A026WC72   A0A158P2E0   F4WUR4   A0A2J7QXU0   A0A1B0A4Z7   K7IWH9   E9IGC2   B4KIQ3   A0A0M5J3Z8   A0A195D384   A0A310S5Y0   A0A1B0FFB5   A0A1A9V9L8   A0A088A9H6   N6U2S3   A0A1A9XGV2   A0A1B0BJH1   A0A2A3EGK3   A0A0M9A7P7   A0A067QV92   R7UWE0   K1Q8F6   A0A087UES5   T1J950   A0A2D4LVJ8   A0A1B6DGB4   A0A210PHC0   A0A2D4PKF3   G3HDQ0   E9GYI9   A0A2D4HCZ4   A0A2D4HD00   A0A0N8A5N3   A0A2D4PKE5   S4RLY6   A0A0P6I3K3   A0A164TR75   A0A2D4LUI5   A0A2D4LUZ1   A0A1W7RBQ9  

PDB

3N1E     E-value=4.38474e-21,     Score=250

KEGG

101747031    K17600 vacuolar protein sorting-associated protein 54 | (RefSeq) vacuolar protein sorting-associated

GO

GO:0000938   GO:0042147   GO:0005829   GO:0003676   GO:0006896   GO:0019905   GO:0000138   GO:0007291   GO:0032456   GO:0001675   GO:0007290   GO:0016021   GO:0005794   GO:0015031   GO:0003975   GO:0006487   GO:0006488   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

PANTHER

PTHR12965  

Subcellular location

  

Length:

399

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04479

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01000

outside

1  -  399

 

 

Pi

1.925696

Theta

4.635344

Tajima's D

-1.541327

CLR

1.085305

CSRT

0.0499975001249938

Interpretation

Uncertain