Silkworm Genome Informatics Database

Gene

KWMTBOMO07300

Annotation

hypothetical_protein_M514_07281_[Trichuris_suis]

Location

Bomo_Chr12(-):10151729-10155277 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.689

CDS

ATGCATTGTTTACGCTGTGGAAAGAAAGAACGGCACAGCCTATCACAGTGTTCAGCCAAGGACCATATTTGTAAAGAATGTAACACGAAGGCACACTTTGAGAGTTGTTGCATTAAGTCTGGACGGGCATACATCAGCTATACAAAAGGGAGCCGAAAATCAGTTAAAAAAATAACAAGACATCATAAGTCCTCAACATCATCATCATCTATCAGTAATAACGAGGAAGAGAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGCATCAATGACATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTATGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGTAACACCAACTTAAAAACAAAGGGAATTACAAAAGTAACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCGGTATACGCCATCAAAACATCAACACCTATGACTCTTAAACAAATATTGGATAAACATGTACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGTTAGATCGTCTGATCTCAGAAGGGATTGTGGAAAAAGTAGATCCTAATGTTACACCTATTGAATGGGCTACACCCACAGTTAACATTTTGAAATCTACAGGGGAAGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAGCTTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTACTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACACCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTTTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTTCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTCATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACTTCCTGGCATTTCTGCTATGAAAGCGCTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAATCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGACGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAACATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACACGCTGATCAGATCAGGCCACGCGAGTCCTCCACCTCAGAAACCCCGAGGAATGAAAGAGCGCATTCTTCTATGCTGCCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAACGAAAAGCTAACTAAAAACAAGAATTCAGCAGCAGTACCATTACCTACACCGCAGTCACCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MHCLRCGKKERHSLSQCSAKDHICKECNTKAHFESCCIKSGRAYISYTKGSRKSVKKITRHHKSSTSSSSISNNEEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYAIKTSTPMTLKQILDKHVQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIERELDRLISEGIVEKVDPNVTPIEWATPTVNILKSTGEVRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANDTKKCIASSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVLGIKKFDQYLRGTKFNLVTDHKPLIHIMGAHRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRFLSTRMTDLNLSEQLLMKTTSKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGLPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADQIRPRESSTSETPRNERAHSSMLPATASPDIGMETTINEKLTKNKNSAAVPLPTPQSPTNVQISPNSPSQHSKLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

A0A1S3DTM5 A2TGR5 A0A1S3DTG6 A0A1S3DUJ5 A0A2G8LRL0 A0A3P8VSE7 + More
A2TGR4 A0A2G8LB01 A0A146LWN6 X1XTW6

Pubmed

17694394 29023486 24487278 26823975

EMBL

EF199622 ABM90393.1 MRZV01000005 PIK62810.1 EF199621 ABM90392.1 + More
MRZV01000143 PIK57404.1 GDHC01007869 JAQ10760.1 ABLF02008333 ABLF02020937

Proteomes

UP000079169 UP000230750 UP000265120 UP000007819

Pfam

PF00665   rve        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00078   RVT_1
PF17917   RT_RNaseH

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf
IPR001878   Znf_CCHC
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR034128   K02A2.6-like
IPR000477   RT_dom
IPR001995   Peptidase_A2_cat
IPR041373   RT_RNaseH

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

CDD

cd05484 retropepsin_like_LTR_2

ProteinModelPortal

A0A1S3DTM5 A2TGR5 A0A1S3DTG6 A0A1S3DUJ5 A0A2G8LRL0 A0A3P8VSE7 + More
A2TGR4 A0A2G8LB01 A0A146LWN6 X1XTW6

PDB

5UOQ E-value=3.04981e-16, Score=212

KEGG

105842438 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0008270 GO:0003676 GO:0015074 GO:0004190 GO:0006810 GO:0016021 GO:0042626 GO:0007156 GO:0008237 GO:0043401 GO:0003707 GO:0051537

Length:

961

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00185

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00011

outside

1 - 961

Pi

15.897089

Theta

22.603181

Tajima's D

-1.349329

CLR

2.627332

CSRT

0.0825958702064897

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree