Silkworm Genome Informatics Database

Gene

KWMTBOMO07288

Pre Gene Modal

BGIBMGA010637

Annotation

PREDICTED:_ATP-dependent_DNA_helicase_Q5-like_[Amyelois_transitella]

Location

Bomo_Chr12(-):10026147-10034897 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.392

CDS

ATGGATCACATAACGGATAAATTAATGCAATATTTTGGTCACCGAAAATTTAAAAGTGAACTTCAAGAACAAGCTATAAGAGCTATTACTAGAGGTGTGCATGATGTTTATGTATCCATGCCAACAGGATCTGGAAAATCATTGTGTTTCCAACTGCCTGCAATGTTACAAGACAATAAGCTAGCTATTGTTTTCTCACCACTTCTGGCACTCATAAAGGATCAAATTGATCATTTGACTAAGCTAAAAATAACAGCTGAATCTATTAATTCCAAAATGAGTGTGAAAGATAAGGAGCGAGTACTAAATGACTTGCATAGTATGAAGCCGAATACAAAGTTTCTTTACATTACTCCTGAGCAGGCGGCTACTGGCACTTTCAAGTCTCTCATAGACCATCTTGTCAAGTACAAAAAAGTATCATATATAGTTGTTGATGAAGCTCACTGTGTCAGCGAGTGGGGACATGACTTCCGACCAGACTATCTAAAGCTTGGGGAATTAAGAGAAAAATATAAATCAATACCATGGGTGGCTCTAACAGCAACGGCAAGTGCAGATGTAGCAAAAGATATTTTATCAAATTTAAAATTGCTTCAACCAGTTGCAAAGTACAAGACTCCTAGTTTTAGAAAGAATCTATTTTATGATGTGGTTTATCAAAATTGTATTGAAGATGAAATAGGGCACTTAATGGAATTCTTAAAAAATAGTTTAAAGGAAGATGAAAATGTTAAACAAAAAGACAAAAATGCTGCAATTGTTTATTGTCGAACAAGAGAGCAGACTGAGGATTTGGCAAATATGCTAACAAAAAGGGGCTTGCAGTCTCTAGCCTATCATGGAGGTTTGAAGACATCAGATCGTATAGCAGTGCAGGAAGCCTGGTCGTCGGGAGTATGTCCATGTGTGTGCGCTACACTATCATTTGGTATGGGAGTGGATAAAGCCACTGTTAGAGCAGTAGCTCACTGGGGCGTTTCGCAAAATGTTGCCGCATATTATCAGGAATCCGGCAGAGCAGGTCGCGACGGTAAACCTGCATTTTGTCGTATCTACTACTGTCGCAGTGAAAGAAACGCAGTTGACTTTTTGCTCAAAAATGAAATCGGCCGAGCTAAAACACCCGAACAAAAGCAACGTTGCAAGAACGCCTACAAAAGTTATGAAATAATGGTTAAATATTGTGAAGATGTTAGATGCCGGCACCTGACGTTCGCGGAGTACTTCGGCGAGGAGCGTCCCGCGTGCGGCGGGCGGTGCGACGTGTGCCGCGACGGACGCAGCGTGCGGCGCGCGCTCGAACAGCACTCCCGCCGCGCGCTCTCCGCCTCGCTGCACACCGCCGGCTTCGCACCCGCCGACCACAGCGACCCCGATCTCTACGGAGGCGGCCGATACGGACAGAAAATGGAAACGCAGTCTTACTATGGCATCGGTCATGATAGTGAAGAGTCTGATGGAGAAAGTAGTCACCGACGGGTCGGAGAAGAGACCAAATCCCTTATTTTAAAAGAATTTGCTGAACGGAAAAAACGTGTTGAAGAAAGAAAAATAACCGACACCCCAGAATCTGCAAAAAATTCCAAATGCCGAGCAGCCGAAAGTACAGCCACGAAGGTTAATGGCTTAACATTGTCGAATCGTGAAGGCTACCTTATCATACTCACGGATGTCCTTAGCAATAATCTCGCCAATATGAAAGGTGTTGACGAACCAAATAAACCATTATCAAAAAATGACATAGAGCAATGCGCTGTAGAAATGGAATATGAAGCATTCTCTAGTCATACTGTTGTGAGTCTCTACAGACGGGCTATGTCTAAAATGATTTCAGCAGTAAAGGCTTGTCAGGATTGCATTTTCCCACAGCTAAAAGAGTTTGACTCTAAATCCAAAAAAGAAGAAAGTAAAATCTATGATGGTTTTGTAAAAGCATCAGAGTTAAGAAATGACGTAGAGTCTAAAAGCGAAGCAAGGCCTCTTTCTAAGGCCGACAAAGAAACAAAAAGAAAAGCTAATTCGTTTAAAAAAGACCCACTCACACAAACAAAACTCAAAACCTTCTTTAAAGAAACATCCAAGAAATCTCCCAATGGTGATGAAAGCGAAAGTGAGAATGAAAATAGTCTTGTAATTGATGAAAATAGTTTAAATATTTGTAACAATACAACATTGAAATTGAATGAAGAATCTACAGATCAGAAGTCTTACAGTCATAATGATACAACATTAAAGATTACTGAAATCGAAACCAGTGAACAAACATCCGATGATGAAGAAGTGAAACCTAAGACTCTAGTTATTAATATAACACTGCAAGGTGTATCCTCCAAAAATATACAAAATGAATCGGAATCATCTGAACAATACGCAGAGGACCGTGACAGGAATATTCAATCACCAGAAAGTAAAAAGGGATCGAAACGAAAAATCAAAGATCTTTTTGGGGACTCTGACGAAAGTGATATAGAATTTAAAAAATCAAAAAAGTCGAAACATAGCGACAAACATAAATCTGGTAAACATAAGAAGTCTCACAGTGAAAGTAAAAAAAACACTAAAGACGAAAGTCGAAAGGTTAAATATATTCCAAAAAAAGAAAGTAGGCATAAAGATGATATTAAGAAACCAATTCAAAACGAAGTGAAAGGCGTTGATAAGCATGAAAATAATCATCACAATGATAGCACAATACTCGTTAAGACGGAAGCTGAAAATGTTGTAAAATTAGAAGGTCCCTCATTGTACTATAATTCAGACAGTGAATCCGAAAAGGAATTAGTCATTGATTTGCCCAATGATTCTCTGGTCAATGACAACGACGGTAACGATACAGCAGTCGAGCTTAGTCGACACGAGTCGGCAACAGATAAAAACATAAGTGAAGAATTAAATTTTGTAGAAGGCCCCATGGACACAGACGACGTTGAACTATCTAAAGCATATAAGCTTAGCAAGGAAGCCGATAAGGTGCTGGAATCGTTAAAGCAATTTGCTGATTTGCCGCCTAAGCCTGTCGTAAGCGAAGTCGGTACTGGCGTGCAGCAGAATGATGGTACTACGAAAAATAAACCAATATCACCAGAACGTCATCCTAAAAAAGATAAACATCACCATAAACATGATCACAAACATCGGAAAACTCTAAGTTCGAAACAGGAAGATAATGCTAAAGTTAACGAGAAATTAAAGAAAAAGGATGAAATACTCCAACACAAAGAAAAAGATATACGAAAAGAAAAATGGAAGCACAAAAAGAAATCAAACGAACCATCCACAAACAAAGCAGAAAAAGTAGATGTGGCAAGTCTGGTTGTTAAATTGTTAATGCCATATTATAAAAAGAAAAGGATTAGCAGCCGCGACCTTTTCAAAATAACTGCCCGGCACATCGTGCATCAACTGTTAGCTATTCAAGTTACTGAAGAGGCAGCAATTGCGATGATTCTTAAAAAAACATTTACAAAGGAGATGAAGATAGAAAAAGAAAGTGACTTAGCAGCTAAGCTGAATCTGAAAAAGGACACGTGA

Protein

MDHITDKLMQYFGHRKFKSELQEQAIRAITRGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSPLLALIKDQIDHLTKLKITAESINSKMSVKDKERVLNDLHSMKPNTKFLYITPEQAATGTFKSLIDHLVKYKKVSYIVVDEAHCVSEWGHDFRPDYLKLGELREKYKSIPWVALTATASADVAKDILSNLKLLQPVAKYKTPSFRKNLFYDVVYQNCIEDEIGHLMEFLKNSLKEDENVKQKDKNAAIVYCRTREQTEDLANMLTKRGLQSLAYHGGLKTSDRIAVQEAWSSGVCPCVCATLSFGMGVDKATVRAVAHWGVSQNVAAYYQESGRAGRDGKPAFCRIYYCRSERNAVDFLLKNEIGRAKTPEQKQRCKNAYKSYEIMVKYCEDVRCRHLTFAEYFGEERPACGGRCDVCRDGRSVRRALEQHSRRALSASLHTAGFAPADHSDPDLYGGGRYGQKMETQSYYGIGHDSEESDGESSHRRVGEETKSLILKEFAERKKRVEERKITDTPESAKNSKCRAAESTATKVNGLTLSNREGYLIILTDVLSNNLANMKGVDEPNKPLSKNDIEQCAVEMEYEAFSSHTVVSLYRRAMSKMISAVKACQDCIFPQLKEFDSKSKKEESKIYDGFVKASELRNDVESKSEARPLSKADKETKRKANSFKKDPLTQTKLKTFFKETSKKSPNGDESESENENSLVIDENSLNICNNTTLKLNEESTDQKSYSHNDTTLKITEIETSEQTSDDEEVKPKTLVINITLQGVSSKNIQNESESSEQYAEDRDRNIQSPESKKGSKRKIKDLFGDSDESDIEFKKSKKSKHSDKHKSGKHKKSHSESKKNTKDESRKVKYIPKKESRHKDDIKKPIQNEVKGVDKHENNHHNDSTILVKTEAENVVKLEGPSLYYNSDSESEKELVIDLPNDSLVNDNDGNDTAVELSRHESATDKNISEELNFVEGPMDTDDVELSKAYKLSKEADKVLESLKQFADLPPKPVVSEVGTGVQQNDGTTKNKPISPERHPKKDKHHHKHDHKHRKTLSSKQEDNAKVNEKLKKKDEILQHKEKDIRKEKWKHKKKSNEPSTNKAEKVDVASLVVKLLMPYYKKKRISSRDLFKITARHIVHQLLAIQVTEEAAIAMILKKTFTKEMKIEKESDLAAKLNLKKDT

Uniprot

H9JM84 A0A2A4K240 A0A2H1WIP2 A0A212FHX2 A0A0N0PEL8 A0A0N1PEK6 + More
A0A194PJ22 B3M3F2 B4HHR5 A0A0J9RWF1

Pubmed

19121390 22118469 26354079 17994087 22936249

EMBL

BABH01033359 BABH01033360 NWSH01000241 PCG78086.1 ODYU01008861 SOQ52826.1 + More
AGBW02008456 OWR53328.1 KQ459752 KPJ20189.1 KQ458711 KPJ05479.1 KQ459603 KPI92719.1 CH902618 EDV39213.1 CH480815 EDW41480.1 CM002912 KMY99599.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000007801 + More
UP000001292

PRIDE

H9JM84

Pfam

PF16124   RecQ_Zn_bind        + More
PF00270   DEAD
PF00271   Helicase_C

Interpro

IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd
IPR011545   DEAD/DEAH_box_helicase_dom
IPR004589   DNA_helicase_ATP-dep_RecQ
IPR032284   RecQ_Zn-bd
IPR002464   DNA/RNA_helicase_DEAH_CS
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

CDD

cd00079 HELICc

ProteinModelPortal

H9JM84 A0A2A4K240 A0A2H1WIP2 A0A212FHX2 A0A0N0PEL8 A0A0N1PEK6 + More
A0A194PJ22 B3M3F2 B4HHR5 A0A0J9RWF1

PDB

5LB8 E-value=7.73014e-127, Score=1166

KEGG

101738338 K10902 ATP-dependent DNA helicase Q5 [EC:3.6.4.12] | (RefSeq) ATP-dependent DNA helicase Q5

GO

GO:0006310 GO:0003676 GO:0005524 GO:0008026 GO:0045002 GO:0000070 GO:0017116 GO:0005525 GO:0005634 GO:0010165 GO:0003924 GO:0045930 GO:0009166 GO:0007156 GO:0008237 GO:0043401 GO:0003707 GO:0051537

Length:

1177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13278

Exp number, first 60 AAs:

0.01125

Total prob of N-in:

0.00106

outside

1 - 1177

Pi

19.67535

Theta

18.363539

Tajima's D

0.298622

CLR

0.864388

CSRT

0.460926953652317

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics