Silkworm Genome Informatics Database

Gene

KWMTBOMO07286

Pre Gene Modal

BGIBMGA010650

Annotation

PREDICTED:_condensin-2_complex_subunit_D3-like_[Amyelois_transitella]

Location

Bomo_Chr12(+):10011968-10015463 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.603 Nuclear Reliability : 1.297

CDS

ATGGTCACACAAATACCCACCGAGGCGGTGTTCGACGCCTTCCTCGCGGGACCCATGCACCAGTTGTCAGATCCTGAAAATAAGGTGCAAGAGCAGGTCGTGACACAGATACAGCAACTGCTTACAGATCGCGTTGACACGTTCGTGTCGAATCAATTCAGTCCGGTGCCTTGGATGTTCTTAGACGGGATAACGCGACACAATATGAGGAGGCATTTGCAGAAAGCCTGCACTTTACTCTCGAAAACATCTAACTGTATAAACCACCGCCTCGTGGACGTGGTGAGCACGCACCTGGGCGCGGCGGACGACCGGCGCGACCTGCAGTGCCTGGTGCTGCTGACCGGCGTGGCGCGGCTCGTGGACTACTCGGACATCGGGTTCGTGCTCGACTATTACTACAAACTTGCTGACGACACTGAGGAGCGCGACGTGCGGCTGATGCCTCTCACAGTGGAGCTACTGTCGGTGTGGAGTCGGTTCGCGAGCAACGAACAGCGGCACGCCCTGCGCGAGCACCTCGTGAGGCGGCTCGCCACGTCTGAAGACGAAACGTCCAGGATCCCCATCGCCACGTTGGCGGCGCAACTCGATCCTGAAAACCTTCAGTGGGCTACGGAAATGATGCAACTTTGTGAGTTTATCCCATATTAA

Protein

MVTQIPTEAVFDAFLAGPMHQLSDPENKVQEQVVTQIQQLLTDRVDTFVSNQFSPVPWMFLDGITRHNMRRHLQKACTLLSKTSNCINHRLVDVVSTHLGAADDRRDLQCLVLLTGVARLVDYSDIGFVLDYYYKLADDTEERDVRLMPLTVELLSVWSRFASNEQRHALREHLVRRLATSEDETSRIPIATLAAQLDPENLQWATEMMQLCEFIPY

Uniprot

H9JM97 A0A1E1WSE7 A0A212FHX1 A0A2A4K2F6 A0A2A4K1E4 A0A2H1VXD0 + More
A0A194R5U2 A0A194PNM1 E0V9V4 A0A3R7PE01 A0A1B6MN06 A0A1B6MQY2 A0A1B6HU70 K1QWD7

Pubmed

19121390 22118469 26354079 20566863 22992520

EMBL

BABH01033357 BABH01033358 BABH01033359 GDQN01001197 JAT89857.1 AGBW02008456 + More
OWR53329.1 NWSH01000241 PCG78084.1 PCG78085.1 ODYU01004973 SOQ45386.1 KQ460883 KPJ11236.1 KQ459603 KPI92720.1 DS234996 EEB10160.1 QCYY01000711 ROT83248.1 GEBQ01002657 JAT37320.1 GEBQ01001645 JAT38332.1 GECU01029480 JAS78226.1 JH818407 EKC33275.1

Proteomes

UP000005204 UP000007151 UP000218220 UP000053240 UP000053268 UP000009046 + More
UP000283509 UP000005408

PRIDE

H9JM97

Pfam

PF12717 Cnd1 + More
PF12765 Cohesin_HEAT

Interpro

IPR016024   ARM-type_fold        + More
IPR032682   Cnd1_C
IPR026971   CND1/NCAPD3
IPR011989   ARM-like
IPR011030   Lipovitellin_superhlx_dom
IPR026003   Cohesin_HEAT

SUPFAM

SSF48371 SSF48371 + More
SSF48431 SSF48431

Gene 3D

1.25.10.10

ProteinModelPortal

H9JM97 A0A1E1WSE7 A0A212FHX1 A0A2A4K2F6 A0A2A4K1E4 A0A2H1VXD0 + More
A0A194R5U2 A0A194PNM1 E0V9V4 A0A3R7PE01 A0A1B6MN06 A0A1B6MQY2 A0A1B6HU70 K1QWD7

KEGG

101738206 K11491 condensin-2 complex subunit D3 | (RefSeq) condensin-2 complex subunit D3-like

GO

GO:0007076

PANTHER

PTHR14222

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0223

Exp number, first 60 AAs:

0.00264

Total prob of N-in:

0.08120

outside

1 - 217

Pi

16.998082

Theta

18.375568

Tajima's D

0.185815

CLR

0.601106

CSRT

0.425678716064197

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics