Gene

KWMTBOMO07279

Pre Gene Modal

BGIBMGA010641

Annotation

PREDICTED:_tetraspanin-13_isoform_X1_[Papilio_machaon]

Location

Bomo_Chr12(-):9923230-9931947      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.849

CDS

ATGTGTGGAGGTTTCACTTGTTCGAAGAATGCTTTGATCGCGTTGAACATTCTTTACGTGGTTGTAGCAAGCATCTTGATTTCAGTCACAGTCTATGGGCAAGCGTCATCCCTGGTTACCAACTTGCCCATTGTAGGTGGTATACTAGCATGTGGAGTATTTCTCATCTTAATCTCCATATTGGGGCTTGCAGGAGCAGTCAAGCATCACCAAGTTATGCTGTTCTTTTACATGGTAATACTATTCCTTTTGTTTTTGGTACAGTTTTCGATTGCTTGTGCTTGTTTGGCAGTTAACTCCGAGCAGCAAGAGATGTTGGCTCAACAGGGATGGAATAAAGTTGATATGGATGTGAAGCAGCAAGTACAAGAACGCTTCCAGTGCTGCGGCTTCCAGGACTCTACATTCACGAACACTACGGCTGATCATCCATCATGTGCTGTGGTCAATGCAATATGTTGCAAGGGCATTAATACAACAAACTGCCAGTGTGAGCCTTGCATGGAGAAATTGAAGGAAACAATTGATTACGCATTTAAACTTTGTGGTGGTATTGGACTTTTCTTCAGCTTCACAGAGTTGTTCGCGGTGTGGCTAGCTCGTCGCTACCGCAACCAGCCCGACCCGAACTACAAGGAGCCTCACGCGATTTTCCCAAGAAAAAATTATCTTTATTAA

Protein

MCGGFTCSKNALIALNILYVVVASILISVTVYGQASSLVTNLPIVGGILACGVFLILISILGLAGAVKHHQVMLFFYMVILFLLFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFTELFAVWLARRYRNQPDPNYKEPHAIFPRKNYLY

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

A0A194R5H2   I4DLA4   A0A2A4K1D1   A0A2H1VYR6   A0A1E1WKV9   A0A2A4K358   + More
A0A0C9RJW0   B0X893   A0A1Q3FEZ0   Q16G00   A0A023EK21   A0A0T6B4A2   U5EYF3   A0A0C9R2U1   A0A1I8Q624   A0A0L0C6B9   A0A1I8N388   Q9VB99   Q29BB1   A0A1Y1M8V0   B4PSB1   A0A1Q3FBS2   B4NA29   A0A1A9ZHE8   A0A1B0GE18   B4LX03   A0A182FIF2   A0A1A9V6C6   A0A1A9X3Z0   D6WB42   A0A1W4VKZ4   A0A1L8DK84   B3M3A5   W5JPU5   W8BM17   B4K899   A0A224XXG4   T1I407   A0A0K8W8E9   A0A1I8Q600   A0A1W4XQ98   B3P886   B4QWU0   B4IC11   A0A1W4XR38   A0A1I8N384   Q8IMQ7   A0A0R1E8C8   V5I982   A0A2M4AXZ8   A0A0Q9WQ33   A0A034VWS4   A0A2J7Q232   A0A0C9QTS4   I5AN34   B4GYV0   A0A023ELF4   A0A3B0JFF5   A0A1B6E945   E0VD20   A0A0P8XZJ1   A0A0Q9X388   A0A1B6JP60   A0A2M4BYV3   A0A158NMR7   A0A0Q9XBN9   W8BXJ0   A0A1B6MT44   A0A2P8XPI5   K7IXP7   A0A0A1XRU7   A0A0K8V6A3   A0A1Y1M7M1   A0A154PQ43   K7IXP6   B4JRW6   A0A151I198   A0A3L8DJD4   A0A1W7R6R3   G2J606   A0A2R7W7C0   A0A1J1J0E3   A0A2A3E7V1   V9IGZ5   K1Q3T6   A0A336M2U5   A0A0M8ZZV8   A0A087ZNC1   E9GGP8   A0A1S3H8R4   A0A1S3HA96   A0A1S3H8Q6   T1E8N4   A0A087TUE4   A0A2R5LK75   A0A3S0ZRN2   A0A293MT82   A0A0B6Z3X8  

Pubmed

26354079    22651552    17510324    24945155    26108605    25315136    + More
11122467    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17994087    28004739    17550304    18362917    19820115    20920257    23761445    24495485    25348373    20566863    21347285    29403074    20075255    25830018    30249741    22992520    21292972   

EMBL

KQ460883    KPJ11111.1    AK402072    KQ459603    BAM18694.1    KPI92854.1    + More
NWSH01000241    PCG78081.1    ODYU01004973    SOQ45384.1    GDQN01003394    JAT87660.1    PCG78082.1    GBYB01007141    JAG76908.1    DS232478    EDS42362.1    GFDL01008931    JAV26114.1    CH478353    CH477361    EAT33169.1    EAT42651.1    GAPW01004143    JAC09455.1    LJIG01015983    KRT81966.1    GANO01000397    JAB59474.1    GBYB01007142    JAG76909.1    JRES01000835    KNC27933.1    AE014297    AF274020    AY060360    AAF56643.1    AAF90146.1    AAL25399.1    AGB96382.1    AHN57549.1    CM000070    EAL27087.3    GEZM01040019    JAV81000.1    CM000160    EDW98573.2    GFDL01010083    JAV24962.1    CH964232    EDW80672.2    CCAG010012081    CH940650    EDW67750.2    KQ971311    EEZ98935.2    GFDF01007253    JAV06831.1    CH902617    EDV43566.2    ADMH02000457    ETN66407.1    GAMC01008522    JAB98033.1    CH933806    EDW16481.2    GFTR01003677    JAW12749.1    ACPB03019018    GDHF01005020    JAI47294.1    CH954182    EDV53490.1    CM000364    EDX14607.1    CH480828    EDW45169.1    AAN14096.2    ACL83571.2    KRK04355.1    GALX01003390    JAB65076.1    GGFK01012343    MBW45664.1    KRF83441.1    GAKP01012662    GAKP01012661    JAC46290.1    NEVH01019373    PNF22637.1    GBYB01007139    JAG76906.1    EIM52369.1    CH479198    EDW27968.1    GAPW01004519    JAC09079.1    OUUW01000005    SPP81124.1    GEDC01026339    GEDC01023008    GEDC01007741    GEDC01006747    GEDC01002847    JAS10959.1    JAS14290.1    JAS29557.1    JAS30551.1    JAS34451.1    DS235070    EEB11276.1    KPU80334.1    KRF99318.1    GECU01006672    JAT01035.1    GGFJ01009136    MBW58277.1    ADTU01020710    KRG02162.1    GAMC01008524    GAMC01008523    JAB98031.1    GEBQ01000904    JAT39073.1    PYGN01001582    PSN33895.1    GBXI01001039    JAD13253.1    GDHF01017852    JAI34462.1    GEZM01040021    GEZM01040020    JAV80998.1    KQ435031    KZC14026.1    CH916373    EDV94506.1    KQ976593    KYM79676.1    QOIP01000007    RLU20545.1    GEHC01000798    JAV46847.1    BT128863    AEN75783.2    KK854411    PTY15634.1    CVRI01000066    CRL05995.1    KZ288357    PBC27131.1    JR047168    AEY60340.1    JH816093    EKC23510.1    UFQT01000461    SSX24576.1    KQ435789    KOX74500.1    GL732543    EFX81450.1    GAMD01002608    JAA98982.1    KK116783    KFM68733.1    GGLE01005790    MBY09916.1    RQTK01000179    RUS85179.1    GFWV01018581    MAA43309.1    HACG01016398    CEK63263.1   

Proteomes

UP000053240    UP000053268    UP000218220    UP000002320    UP000008820    UP000095300    + More
UP000037069    UP000095301    UP000000803    UP000001819    UP000002282    UP000007798    UP000092445    UP000092444    UP000008792    UP000069272    UP000078200    UP000091820    UP000007266    UP000192221    UP000007801    UP000000673    UP000009192    UP000015103    UP000192223    UP000008711    UP000000304    UP000001292    UP000235965    UP000008744    UP000268350    UP000009046    UP000005205    UP000245037    UP000002358    UP000076502    UP000001070    UP000078540    UP000279307    UP000183832    UP000242457    UP000005408    UP000053105    UP000005203    UP000000305    UP000085678    UP000054359    UP000271974   

PRIDE

Q9VB99    Q8IMQ7    G2J606   

Pfam

PF00335   Tetraspanin

Interpro

IPR018499   Tetraspanin/Peripherin        + More
IPR000301   Tetraspanin       
IPR008952   Tetraspanin_EC2_sf       

SUPFAM

SSF48652   SSF48652       

ProteinModelPortal

A0A194R5H2   I4DLA4   A0A2A4K1D1   A0A2H1VYR6   A0A1E1WKV9   A0A2A4K358   + More
A0A0C9RJW0   B0X893   A0A1Q3FEZ0   Q16G00   A0A023EK21   A0A0T6B4A2   U5EYF3   A0A0C9R2U1   A0A1I8Q624   A0A0L0C6B9   A0A1I8N388   Q9VB99   Q29BB1   A0A1Y1M8V0   B4PSB1   A0A1Q3FBS2   B4NA29   A0A1A9ZHE8   A0A1B0GE18   B4LX03   A0A182FIF2   A0A1A9V6C6   A0A1A9X3Z0   D6WB42   A0A1W4VKZ4   A0A1L8DK84   B3M3A5   W5JPU5   W8BM17   B4K899   A0A224XXG4   T1I407   A0A0K8W8E9   A0A1I8Q600   A0A1W4XQ98   B3P886   B4QWU0   B4IC11   A0A1W4XR38   A0A1I8N384   Q8IMQ7   A0A0R1E8C8   V5I982   A0A2M4AXZ8   A0A0Q9WQ33   A0A034VWS4   A0A2J7Q232   A0A0C9QTS4   I5AN34   B4GYV0   A0A023ELF4   A0A3B0JFF5   A0A1B6E945   E0VD20   A0A0P8XZJ1   A0A0Q9X388   A0A1B6JP60   A0A2M4BYV3   A0A158NMR7   A0A0Q9XBN9   W8BXJ0   A0A1B6MT44   A0A2P8XPI5   K7IXP7   A0A0A1XRU7   A0A0K8V6A3   A0A1Y1M7M1   A0A154PQ43   K7IXP6   B4JRW6   A0A151I198   A0A3L8DJD4   A0A1W7R6R3   G2J606   A0A2R7W7C0   A0A1J1J0E3   A0A2A3E7V1   V9IGZ5   K1Q3T6   A0A336M2U5   A0A0M8ZZV8   A0A087ZNC1   E9GGP8   A0A1S3H8R4   A0A1S3HA96   A0A1S3H8Q6   T1E8N4   A0A087TUE4   A0A2R5LK75   A0A3S0ZRN2   A0A293MT82   A0A0B6Z3X8  

KEGG

101737394    K17356 tetraspanin-13/31 | (RefSeq) tetraspanin-13

GO

GO:0016021   GO:0005887   GO:0009116   GO:0004850   GO:0005737   GO:0009166   GO:0007156   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

Subcellular location

Membrane  

Length:

225

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

89.2772100000001

Exp number, first 60 AAs:

39.92468

Total prob of N-in:

0.62920

POSSIBLE N-term signal

sequence

inside

1  -  11

TMhelix

12  -  34

outside

35  -  43

TMhelix

44  -  66

inside

67  -  72

TMhelix

73  -  92

outside

93  -  176

TMhelix

177  -  199

inside

200  -  225

 

 

Pi

1.371581

Theta

3.032504

Tajima's D

-1.843411

CLR

10.000816

CSRT

0.0180490975451227

Interpretation

Uncertain