Gene

KWMTBOMO07265

Pre Gene Modal

BGIBMGA010596

Annotation

PREDICTED:_histone_demethylase_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr12(+):9506492-9509312      View in EpiBrowser

Transcription factor

ARID

Location in the cell

Cytoplasmic   Reliability : 2.547 Nuclear   Reliability : 2.029

CDS

ATGGATATCAAAAATATTCAGAAAAACGCCATGCAAAAAAGTGCGGAGTTCACTTTCACTCCGCCACCCGAGGCTCCAGTATTTGAACCTACAGCTGAAGAGTTTTTGGATCCCTTGAGTTATATCGCTAAAATTCGTCCTGTGGCTGAGAAAACAGGAATTTGCAAAATTAAGCCACCATCTCGATGGCAACCACCTTTTTCGTTAGACGTAGACAAATTGAAATTTGTTCCTCGCATTCAAAAAGTAAATGAGCTGGAAGCTATTACAAGGTTAAAACTATTATTTCTTGAAAAAATCTTAAAATTTTGGGATTTACAAGGGTCACCATTAAAGATACCTATGATTGAAAATAAAACTCTGGACCTTTATTGTTTAAAATTTTGGGTTGATGAAGAAGGTGGTTTCGAAAATTGTAATACTCCTAAAAAATGGCGAAAGATAGCAAATTCCATGGGTTACAGTCAAAATACCAGTACAATGAATTTTTTAAGGAGCAATTATGAGAAAATATTACTTCCATATGAAATATTTGAGAAAAGCAAAGCTGATATTTTGAAAACAGTTAAAAAGACTGAAACAAAAACTGAATCTAAGGTTGGAGAACCTGGAAAATTAATGTTTAAAGAAGTATCAGTAGAATCAATTACCAAAGTCAAGGATGAGAGCGAAGTGAAAGAAGAAAAGCTCAGCAAAAGTATAAAGAAAACAAAAACAGGTTCAGATATTACAATTGAAATAGATTTGACCAAAAGTAATTTAGAAAATGAAGTATTAAAAAGAAACCGTGAGTTAAGAAGATTGGCTTGCTATGGACCAGGACCTAAAATGCCAGGACTCAATGATGAAGAATTTGATATAACTAAATCCAGAAAAAGACCGCGGTATGATTTGGATCCATTAGCAATTTATATTTGTGCAATTTGCCAAAAGGATCACAGAGATGACCTGCTTCTCATTTGTAATGGTTGTCAAGATACTTATCATACATTCTGTTTAAAACCACCACTGACAGCTGTGCCAGATGGAGACTGGCGATGTCCCTGTTGCATTGCGGCAGAGGTACATAAACCAGCAGAGGCATTTGGGTTTGCTCAAGCTGAAAGAGAATATACGCTTCAGCAGTTTGGAGAAATGGCAGATAAATTTAAATCTGAATATTTTAGCATGTCTGGTCATTTGGTTCCCACTAATGTTGCAGAGAAAGAATTTTGGAGAATAATTTCATCAGTAGAGGAAGATGTTACGGTTGAATATGGAGCAGATTTACATTCAATGGACCACGGCTCTGGATTCCCAACTAAATCATCTCTAAATCTCTATCCTGGTGATCAAGAATATGTTGATTCTGGTTGGAACCTCAATAACTTGCCAGTCTTAGAAGGCTCTGTATTAAGATTTATTAATGCAGACATATCAGGTATGACTGTCCCTTGGATGTATGTAGGGATGTGCTTTTCAGCATTTTGTTGGCATAATGAAGATCACTGGAGTTATTCTATAAATTATTTACATTGGGGTGAAGCAAAAACTTGGTATGGAGTACCTGGGAGTGGAGCAGAACTTTTAGAAAATGCAATGAAAGCAGCAGCTCCTGACCTTTTCAAAACCCAACCAGATTTACTGCATCAGTTAGTTACTATAATGAATCCTAACATTCTTATGGCTGCAGGGGTGCCAATTTACAGAACTGATCAGCAAGCTGGAGAGTTTGTTATCACTTTTCCAAGAGCATATCATGCTGGATTTAATCAAGGATATAACTTTGCTGAGGCAGTTAACTTTGCTCCTCCTGATTGGTTACCTATTGGACGAGAATGCATCACTCATTACAAAAAATTAAAAAGATTCTGTGTATTTTCTCATGATGAACTTATATGTAAAATGGCATTAGAAGGAGATAGATTAGACTTGGATACTGCATTACAAACACAAAAAGAGTTAATGCGCGCTACACAAGAAGAGGGATCTTTCCGTGGAAAGCTGGCAGACAAAGGTATTAAGAATGTTCGCAGAACTGCATTTGAGCTGCTCGGTGATGATGAACGACTTTGTGAAATCTGCAAAACGACTTGCTTCTTATCATCTGTTTCATGTAGTGAATGCAAACATATGGCATGCTTACAACATGCAGAAGTTATGTGTGAATGTAAGTGGGAGAAAAAAACCTTATACTATAGGTATGACATGGATGAATTGCATATAATGGTACAAACAATTGACTTTAGGGTTAACAGCTTTGATAAATGGATGACTGATGCCAAGACCCTTTTGCTCCCCACTGCCCCTGATATAGGTAGACTTCAAAAATTGAAAAATTTGATTGATGAAGCTGATGAGTTAAAATTACCAAAATGCAAGTTATTTCATCAGTTAAAAGAAGAATATACAAAAACCACCGAGAACACTGAACCGATTGTAATAGAACTTGATGATGATTAA

Protein

MDIKNIQKNAMQKSAEFTFTPPPEAPVFEPTAEEFLDPLSYIAKIRPVAEKTGICKIKPPSRWQPPFSLDVDKLKFVPRIQKVNELEAITRLKLLFLEKILKFWDLQGSPLKIPMIENKTLDLYCLKFWVDEEGGFENCNTPKKWRKIANSMGYSQNTSTMNFLRSNYEKILLPYEIFEKSKADILKTVKKTETKTESKVGEPGKLMFKEVSVESITKVKDESEVKEEKLSKSIKKTKTGSDITIEIDLTKSNLENEVLKRNRELRRLACYGPGPKMPGLNDEEFDITKSRKRPRYDLDPLAIYICAICQKDHRDDLLLICNGCQDTYHTFCLKPPLTAVPDGDWRCPCCIAAEVHKPAEAFGFAQAEREYTLQQFGEMADKFKSEYFSMSGHLVPTNVAEKEFWRIISSVEEDVTVEYGADLHSMDHGSGFPTKSSLNLYPGDQEYVDSGWNLNNLPVLEGSVLRFINADISGMTVPWMYVGMCFSAFCWHNEDHWSYSINYLHWGEAKTWYGVPGSGAELLENAMKAAAPDLFKTQPDLLHQLVTIMNPNILMAAGVPIYRTDQQAGEFVITFPRAYHAGFNQGYNFAEAVNFAPPDWLPIGRECITHYKKLKRFCVFSHDELICKMALEGDRLDLDTALQTQKELMRATQEEGSFRGKLADKGIKNVRRTAFELLGDDERLCEICKTTCFLSSVSCSECKHMACLQHAEVMCECKWEKKTLYYRYDMDELHIMVQTIDFRVNSFDKWMTDAKTLLLPTAPDIGRLQKLKNLIDEADELKLPKCKLFHQLKEEYTKTTENTEPIVIELDDD

Uniprot

H9JM44   E9JTY0   A0A2A4JI54   A0A212EWI6   A0A194R1K5   A0A194PNY7   + More
A0A0L7KX08   A0A2H1VIC5   N6TYB2   A0A151IQ66   F4WHF8   A0A0N0U5B4   A0A2J7QD49   A0A1Y1L5C8   A0A0L7QMR0   A0A0C9RHY9   A0A154NXH3   E2B0Z0   A0A088ALH5   A0A1Y1L5N2   A0A0P4WL73   A0A1Q3F832   A0A1Q3F853   A0A1B6CKQ7   A0A1B6DAW0   T1PL56   V9II47   A0A0K2U6I0   A0A151NIG8   B8YDZ0   A0A1S3FS10   A0A1S2ZXV3   A0A0T6BEF4   A0A093GAG8   A0A091X0D1   K7FGV6   A0A091QIJ0   A0A1U7RV07   A0A093FJC4   A0A091Q7P2   A0A091GGY2   A0A093T0W5   A0A091JHH4   A0A0A0A2K9   A0A093P8W1   A0A087RJE1   A0A087VPQ8   A0A091P401   R0KAA7   A0A091M0C4   A0A091SCV5   A0A091S0Q8   A0A091H1L7  

Pubmed

19121390    22118469    26354079    26227816    23537049    21719571    + More
28004739    20798317    25315136    22293439    17381049   

EMBL

BABH01039931    GU365866    ADU25265.1    NWSH01001485    PCG71110.1    AGBW02011969    + More
OWR45852.1    KQ460883    KPJ11125.1    KQ459603    KPI92840.1    JTDY01004926    KOB67589.1    ODYU01002725    SOQ40585.1    APGK01047273    KB741077    ENN74310.1    KQ976785    KYN08295.1    GL888161    EGI66312.1    KQ435794    KOX73732.1    NEVH01015827    PNF26510.1    GEZM01063974    JAV68883.1    KQ414889    KOC59831.1    GBYB01012792    JAG82559.1    KQ434778    KZC04317.1    GL444730    EFN60647.1    GEZM01063973    JAV68884.1    GDRN01040654    JAI67145.1    GFDL01011315    JAV23730.1    GFDL01011313    JAV23732.1    GEDC01023261    JAS14037.1    GEDC01014538    JAS22760.1    KA648850    AFP63479.1    JR048908    AEY60798.1    HACA01016483    CDW33844.1    AKHW03002956    KYO36588.1    FJ527001    ACL51656.1    LJIG01001222    KRT85718.1    KL215223    KFV63769.1    KL411409    KFR07051.1    AGCU01168363    AGCU01168364    AGCU01168365    AGCU01168366    AGCU01168367    AGCU01168368    AGCU01168369    AGCU01168370    AGCU01168371    AGCU01168372    KK797575    KFQ26431.1    KK632814    KFV56690.1    KK688406    KFQ15576.1    KL447420    KFO73377.1    KL420463    KFW88369.1    KK501987    KFP19235.1    KL870627    KGL88814.1    KL225530    KFW73388.1    KL226405    KFM13595.1    KL501135    KFO14600.1    KK651631    KFQ02066.1    KB742547    EOB07246.1    KK517532    KFP65258.1    KK469086    KFQ56417.1    KK938954    KFQ49197.1    KL517532    KFO88525.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000019118    UP000078542    UP000007755    UP000053105    UP000235965    UP000053825    UP000076502    UP000000311    UP000005203    UP000095301    UP000050525    UP000081671    UP000079721    UP000053875    UP000053283    UP000007267    UP000189705    UP000053760    UP000053119    UP000053858    UP000054081    UP000053286   

PRIDE

H9JM44    E9JTY0   

Pfam

PF02928   zf-C5HC2        + More
PF00628   PHD
PF02373   JmjC
PF02375   JmjN
PF01388   ARID
PF08429   PLU-1

Interpro

IPR001841   Znf_RING        + More
IPR003349   JmjN       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001606   ARID_dom       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR011011   Znf_FYVE_PHD       
IPR003347   JmjC_dom       
IPR036431   ARID_dom_sf       
IPR004198   Znf_C5HC2       
IPR013637   Lys_sp_deMease-like_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF57903   SSF57903        + More
SSF46774   SSF46774       

Gene 3D

1.10.150.60     3.30.40.10    

ProteinModelPortal

H9JM44   E9JTY0   A0A2A4JI54   A0A212EWI6   A0A194R1K5   A0A194PNY7   + More
A0A0L7KX08   A0A2H1VIC5   N6TYB2   A0A151IQ66   F4WHF8   A0A0N0U5B4   A0A2J7QD49   A0A1Y1L5C8   A0A0L7QMR0   A0A0C9RHY9   A0A154NXH3   E2B0Z0   A0A088ALH5   A0A1Y1L5N2   A0A0P4WL73   A0A1Q3F832   A0A1Q3F853   A0A1B6CKQ7   A0A1B6DAW0   T1PL56   V9II47   A0A0K2U6I0   A0A151NIG8   B8YDZ0   A0A1S3FS10   A0A1S2ZXV3   A0A0T6BEF4   A0A093GAG8   A0A091X0D1   K7FGV6   A0A091QIJ0   A0A1U7RV07   A0A093FJC4   A0A091Q7P2   A0A091GGY2   A0A093T0W5   A0A091JHH4   A0A0A0A2K9   A0A093P8W1   A0A087RJE1   A0A087VPQ8   A0A091P401   R0KAA7   A0A091M0C4   A0A091SCV5   A0A091S0Q8   A0A091H1L7  

PDB

5V9T     E-value=1.33844e-180,     Score=1629

KEGG

100533205    K11446 histone demethylase JARID1 [EC:1.14.11.-] | (RefSeq) histone demethylase

GO

GO:0046872   GO:0005634   GO:0003677   GO:0008168   GO:1901726   GO:0034647   GO:0034648   GO:0044212   GO:0051090   GO:0045893   GO:0000122   GO:0008270   GO:0035064   GO:0031490   GO:0003713   GO:0003700   GO:0032993   GO:0032922   GO:0005515   GO:0030170   GO:0006520   GO:0006508   GO:0008237   GO:0043401   GO:0003707   GO:0051537  

Subcellular location

Nucleus  

Length:

813

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04055

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00043

outside

1  -  813

 

 

Pi

5.337673

Theta

4.378218

Tajima's D

0.883313

CLR

0.715914

CSRT

0.656467176641168

Interpretation

Uncertain