Gene

KWMTBOMO07264  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010593

Annotation

PREDICTED:_39S_ribosomal_protein_L38?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr12(-):9499044-9502891      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.503

CDS

ATGCTAAACACAATCCGTGGGGCCCGTATAGCTGCTGTTCAACTTCAACAAATAAGGTCGGGGCACAGAGTACGAGGTAATCCGCCTATATATGCGAGGTCCTTGAAACAACGTATCCAAGAACTTAATTACAAAGATGAACTGTACACAAGTCGAATCGACATTGGCTTCCCACCAATAAAGCAAACTAAAGAAGTTCGTGATCATCGACTGCAACATCTGAGAAAAATAAAAAGTGATAAAAACTTAGAAAAATCATCTCGAAATTTAAAACTTGAAATAGATCTGGAAGATGTCAGAAAAGAATGGCTGAAAACTACAGGTCCATTTCATAAAAAACAAATTGGAGACCATTATGGCGTATTTGAACATCTTTATGGTGAAGGATATTTTTTACCACATTTAAACATAGATGTTCTGTACAATTTGAAGGATGGCACATTTTTGCCTGTTTGTGCAGGAAATGTAATTAAGCCTACAGAGGCTTTAGAGGCACCAATTATTACTTATGAATCTGATGACAATGCATTATGGACTTTAGCATTTACTAGCTTAGATGGTCATTTATATGAGAATGAAAAGGAATATGTACATTGGCTTGTGGCTAATATACCTGGTAATGCTATCGAGAAGGGTGAAACTCTTGTTGATTATTTACAGCCATTTCCTTTGAAGGGCACTGGTTACCACAGATATGTGTTTGTTCTTTATAAACAGGATAAGACAATTGATTATGCTTTACCAAAAGTTACTTCGTCATCAGCTCTTCAAGATCGCACATTTGTTACTAGAGAATGGTATAAAAAACATCAAGATAATATCACACCAATTGGATTATCGTTTTACCAGAGTGATTGGGATTATTCCGTTAGAAGTTTTTTCCACAATGTCTTAAATGCAAAAGAACCAGAATATGAATATGATTTCCCGGCGCCATATATCAGACCCCAGGAATGGTTTCCACGCCGAAAACCCTTCAATCTTTATATGGACAAATATCGCGATCCAAAGAAGATAAACGAAGAATATTTGCTACGTAAACTAAAAAATGAAGACCCATTTAAGAGGCCTCCTCCTCCTTTAAAATTCCCCAATGCTCAACAACTGCCTAAGAGTATGCCTTCATGGCTAAAACTTCATGAGAAGAAAATCCGACTAGGCTGGGGGAGAGTAAATGATGTTTAA

Protein

MLNTIRGARIAAVQLQQIRSGHRVRGNPPIYARSLKQRIQELNYKDELYTSRIDIGFPPIKQTKEVRDHRLQHLRKIKSDKNLEKSSRNLKLEIDLEDVRKEWLKTTGPFHKKQIGDHYGVFEHLYGEGYFLPHLNIDVLYNLKDGTFLPVCAGNVIKPTEALEAPIITYESDDNALWTLAFTSLDGHLYENEKEYVHWLVANIPGNAIEKGETLVDYLQPFPLKGTGYHRYVFVLYKQDKTIDYALPKVTSSSALQDRTFVTREWYKKHQDNITPIGLSFYQSDWDYSVRSFFHNVLNAKEPEYEYDFPAPYIRPQEWFPRRKPFNLYMDKYRDPKKINEEYLLRKLKNEDPFKRPPPPLKFPNAQQLPKSMPSWLKLHEKKIRLGWGRVNDV

Uniprot

H9JM41   A0A1E1W9Q2   A0A2A4JI71   A0A2H1VIG7   A0A212EWJ2   A0A3S2NPS0   + More
A0A194R5I6   A0A194PJE1   A0A0L7KX01   D6WGV2   A0A067QJE0   J3JVA6   U4U1M3   A0A2J7RJP4   A0A1Y1KZB3   A0A1W4WF76   A0A2H8TGZ6   N6THB7   A0A154P084   A0A182TEG6   B0WSZ5   A0A182IHG9   A0A182RKQ0   A0A2C9H8U7   A0A1Q3F5G6   Q7QEH4   A0A1Q3F4M4   A0A182HDB7   A0A2M4CRM8   Q16QR9   A0A2M4CRQ6   A0A2S2Q3K6   J9K741   A0A023ESZ4   U5ERQ6   A0A182IK36   A0A084VQG3   A0A182M2W6   W8AZ64   A0A2A3EJT8   E9FW29   A0A336M6N0   A0A182Q033   A0A336MQ47   A0A0A1WQU6   A0A1W4VHD9   A0A151JXM6   A0A336KMK6   A0A2M3ZHN9   A0A034WKD8   A0A2M3Z662   A0A2M3Z666   A0A182YH07   B4GVC6   Q29GN4   A0A182TB25   F4WGB2   A0A026WSI7   A0A1B6FG51   E2AZF6   A0A1A9UUD9   A0A088A3P3   A0A182FJX0   A0A182W5W8   Q9VY48   A0A0J7P4Q8   A0A0L7QS30   B4HCA0   A0A0K8VCN3   B4Q2R4   A0A158NI56   B4IGB4   A0A1B0G4S4   D3TQI7   A0A1B6LT33   A0A1A9Z4P7   A0A151WJE5   E2B354   A0A2M4AIQ7   T1DJ74   E9IB86   A0A0P6G1N4   A0A195CNX5   A0A0N8E2W2   A0A195EGP4   A0A2M4BR13   B4M365   B3NVV2   A0A1B6DR97   A0A2M4BR07   A0A2M4AIJ1   B4L1J2   A0A1B6HVY9   A0A1A9X7U3   A0A1B0ALN7   B4R4N2   A0A1A9W211   A0A3B0KPY8   A0A1I8NXN3   B3N127  

Pubmed

19121390    22118469    26354079    26227816    18362917    19820115    + More
24845553    22516182    23537049    28004739    12364791    14747013    17210077    26483478    17510324    24945155    24438588    24495485    21292972    25830018    25348373    25244985    17994087    15632085    21719571    24508170    30249741    20798317    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    21347285    20353571    21282665   

EMBL

BABH01039930    BABH01039931    GDQN01007463    JAT83591.1    NWSH01001485    PCG71112.1    + More
ODYU01002725    SOQ40586.1    AGBW02011969    OWR45853.1    RSAL01000165    RVE45285.1    KQ460883    KPJ11126.1    KQ459603    KPI92839.1    JTDY01004926    KOB67591.1    KQ971330    EEZ99758.1    KK853422    KDR07704.1    BT127173    AEE62135.1    KB631992    ERL87769.1    NEVH01002989    PNF41056.1    GEZM01068811    JAV66759.1    GFXV01001569    MBW13374.1    APGK01026507    APGK01026508    KB740635    ENN79824.1    KQ434783    KZC04668.1    DS232078    EDS34128.1    APCN01001075    GFDL01012234    JAV22811.1    AAAB01008847    EAA06842.4    GFDL01012533    JAV22512.1    JXUM01034121    KQ561012    KXJ80040.1    GGFL01003814    MBW67992.1    CH477736    EAT36733.1    GGFL01003815    MBW67993.1    GGMS01003115    MBY72318.1    ABLF02017488    ABLF02017492    ABLF02017493    ABLF02017494    ABLF02045163    GAPW01001672    JAC11926.1    GANO01003628    JAB56243.1    ATLV01015207    KE525003    KFB40207.1    AXCM01000747    GAMC01015033    GAMC01015032    JAB91522.1    KZ288227    PBC31734.1    GL732525    EFX88649.1    UFQS01000452    UFQT01000452    SSX04174.1    SSX24539.1    AXCN02002234    UFQT01001520    SSX30903.1    GBXI01013065    JAD01227.1    KQ981578    KYN39760.1    SSX04173.1    SSX24538.1    GGFM01007197    MBW27948.1    GAKP01004749    JAC54203.1    GGFM01003258    MBW24009.1    GGFM01003261    MBW24012.1    CH479192    EDW26413.1    CH379064    EAL32075.1    GL888128    EGI66879.1    KK107111    QOIP01000011    EZA58997.1    RLU16784.1    GECZ01020826    JAS48943.1    GL444207    EFN61195.1    AE014298    AY071580    AAF48357.2    AAL49202.1    LBMM01000112    KMR04884.1    KQ414758    KOC61450.1    CH479287    EDW25285.1    GDHF01015688    JAI36626.1    CM000162    EDX01658.1    ADTU01016299    CH480835    EDW48848.1    CCAG010019908    EZ423689    ADD19965.1    GEBQ01013198    JAT26779.1    KQ983039    KYQ47989.1    GL445295    EFN89879.1    GGFK01007349    MBW40670.1    GAMD01001606    JAA99984.1    GL762111    EFZ22152.1    GDIQ01039824    JAN54913.1    KQ977481    KYN02416.1    GDIP01043135    GDIQ01067172    JAM60580.1    JAN27565.1    KQ978957    KYN27067.1    GGFJ01006358    MBW55499.1    CH940651    EDW65240.2    CH954180    EDV47117.1    GEDC01009092    JAS28206.1    GGFJ01006359    MBW55500.1    GGFK01007273    MBW40594.1    CH933810    EDW07628.1    GECU01028921    JAS78785.1    JXJN01000029    CM000366    EDX17886.1    OUUW01000015    SPP88679.1    CH902650    EDV30062.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053240    UP000053268    + More
UP000037510    UP000007266    UP000027135    UP000030742    UP000235965    UP000192223    UP000019118    UP000076502    UP000075902    UP000002320    UP000075840    UP000075900    UP000076407    UP000007062    UP000069940    UP000249989    UP000008820    UP000007819    UP000075880    UP000030765    UP000075883    UP000242457    UP000000305    UP000075886    UP000192221    UP000078541    UP000076408    UP000008744    UP000001819    UP000075901    UP000007755    UP000053097    UP000279307    UP000000311    UP000078200    UP000005203    UP000069272    UP000075920    UP000000803    UP000036403    UP000053825    UP000002282    UP000005205    UP000001292    UP000092444    UP000092445    UP000075809    UP000008237    UP000078542    UP000078492    UP000008792    UP000008711    UP000009192    UP000092443    UP000092460    UP000000304    UP000091820    UP000268350    UP000095300    UP000007801   

PRIDE

H9JM41    Q9VY48   

Pfam

PF01161   PBP        + More
PF03105   SPX
PF03124   EXS

Interpro

IPR036610   PEBP-like_sf        + More
IPR035810   PEBP_euk       
IPR008914   PEBP       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR010987   Glutathione-S-Trfase_C-like       
IPR004342   EXS_C       
IPR004331   SPX_dom       

SUPFAM

SSF49777   SSF49777        + More
SSF47616   SSF47616       

Gene 3D

3.90.280.10    

CDD

cd00866  PEBP_euk

ProteinModelPortal

H9JM41   A0A1E1W9Q2   A0A2A4JI71   A0A2H1VIG7   A0A212EWJ2   A0A3S2NPS0   + More
A0A194R5I6   A0A194PJE1   A0A0L7KX01   D6WGV2   A0A067QJE0   J3JVA6   U4U1M3   A0A2J7RJP4   A0A1Y1KZB3   A0A1W4WF76   A0A2H8TGZ6   N6THB7   A0A154P084   A0A182TEG6   B0WSZ5   A0A182IHG9   A0A182RKQ0   A0A2C9H8U7   A0A1Q3F5G6   Q7QEH4   A0A1Q3F4M4   A0A182HDB7   A0A2M4CRM8   Q16QR9   A0A2M4CRQ6   A0A2S2Q3K6   J9K741   A0A023ESZ4   U5ERQ6   A0A182IK36   A0A084VQG3   A0A182M2W6   W8AZ64   A0A2A3EJT8   E9FW29   A0A336M6N0   A0A182Q033   A0A336MQ47   A0A0A1WQU6   A0A1W4VHD9   A0A151JXM6   A0A336KMK6   A0A2M3ZHN9   A0A034WKD8   A0A2M3Z662   A0A2M3Z666   A0A182YH07   B4GVC6   Q29GN4   A0A182TB25   F4WGB2   A0A026WSI7   A0A1B6FG51   E2AZF6   A0A1A9UUD9   A0A088A3P3   A0A182FJX0   A0A182W5W8   Q9VY48   A0A0J7P4Q8   A0A0L7QS30   B4HCA0   A0A0K8VCN3   B4Q2R4   A0A158NI56   B4IGB4   A0A1B0G4S4   D3TQI7   A0A1B6LT33   A0A1A9Z4P7   A0A151WJE5   E2B354   A0A2M4AIQ7   T1DJ74   E9IB86   A0A0P6G1N4   A0A195CNX5   A0A0N8E2W2   A0A195EGP4   A0A2M4BR13   B4M365   B3NVV2   A0A1B6DR97   A0A2M4BR07   A0A2M4AIJ1   B4L1J2   A0A1B6HVY9   A0A1A9X7U3   A0A1B0ALN7   B4R4N2   A0A1A9W211   A0A3B0KPY8   A0A1I8NXN3   B3N127  

PDB

6GB2     E-value=1.61522e-67,     Score=650

KEGG

101743314    K17419 large subunit ribosomal protein L38 | (RefSeq) 39S ribosomal protein L38, mitochondrial

GO

GO:0005840   GO:0005762   GO:0016021   GO:0003735   GO:0006412   GO:0032543  

PANTHER

PTHR11362  

Length:

394

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00146

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01648

outside

1  -  394

 

 

Pi

18.234108

Theta

13.427336

Tajima's D

0.767338

CLR

0.267606

CSRT

0.601669916504175

Interpretation

Uncertain