Silkworm Genome Informatics Database

Gene

KWMTBOMO07262

Pre Gene Modal

BGIBMGA010594

Annotation

Uncharacterized_protein_OBRU01_18063_[Operophtera_brumata]

Location

Bomo_Chr12(-):9437707-9445851 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.991

CDS

ATGTGGGTTCTAGTGATGCTCGCCCTAGCGGCGGTAGCCACAGCCGATTGCCCACGTCACTGCGAATGCAAGTGGCGCAGCGGCAAAGAATCCGCACTATGTGCACGCGCCGGACTCTCATCTATCCCTCCACGACTAGACCCGACCACGCAATTGCTAGATCTCTCAGAAAATCGACTACCGACTCTACGTGATGATGTCTTTGCCTCAGCGGGACTTCTTAATCTTCAACGTCTTTATCTTCCTTCATGCAGCGTCCGAACTATACGTCAATATGCCTTCCGCGCTCTAGTGAATCTCGTTGAGTTAGATTTATCTCGAAACCGACTTGATTCAGTGCCATCACACACATTTGATTCCATACCCGAACTACGTGAGCTAAAACTGAGTGGTAATCCAATAGCAAAGATTTTAGATGAATCATTCACTTCATTACCACATTTGGTACGCCTCAGTCTTAGTTCTTGTAAGGTTGCTGAAATAGAGCTCCGGGGATTTACTGGTTTGGAGTCGTCTTTAGAATATTTGGAGCTTAGCCGGAATAAGCTACAGGTTCTACATGTTGCAGTACTAGCATCGTTACGATCTTTGAAAGGATTAGAATTGGCAAATAATCCTTGGGAATGTACTTGTGCATTGAGACCTCTACGTGATTGGATGATTACAAAAAATGTACCAGCAACTGTGGTGCCAGAATGTGCATTGCCTCCCCGATTAATGTCGCATTCTTGGGATAGATTGGACTTGGAAGACTTTGCGTGTCAACCAGTGGTCAGTGCTTTTTCAAGTAACTTGAAAGGAGTGGAAGGGGAACAAGTTGTATTAGTGTGTCAAGTAAAAGGAGTACCAGCACCGAGAGTTCGCTGGGTACGTGCTGGTCGATTACTGGCAAACACTACTTCTAATGTCAATTCTGGTAGAGCTTTTATGTTACGTAGTGAAGGTCATACGAGTAATTTAACAATAGTATCTGCTGATATTCAAGATGCTGGATCGTATACTTGTAGTGCCGAAAATCGGGCAGGAAAGGCTGAACTTACTTTGAATTTAGTCATAGAGAAAAAACTGGAAAAAACAGCATTTTCTATCTTTAATGTAATTGTAGGCCTAATTGGATTTATTGGCCTTCTATTAGTTATATTAACAACAGTAATGTACGTGATGGGTTTTTATAAAAAAAGACAAGTGGATCGATGGGATCAACAAATTGTAACAACGAGTCATCGTGACGATACATATGAGAAAATTGAAGCTGGTATAAAAAATATAGTCGAAGTACCAAAGATACTACCTAATGACAACAATCGTAAAAGAGGCGATTATAGAAACGTTCCATCACACGACCCAGAAGATGAATTAGAAGGATATCTGCGAGGCGATTTGCAAGAGGAAAGGGAATGTGCGATATCTCCACCTATTGAACCAAATTGGCGAAGATCAGATTTTGAACAAATAACAAGAAAAGTTAACGTAGAACAAGATTTACACATACCTCAATATAGCGAATACAATTTACGATGTGACGCAACCCCAGAATCGATCCAAAGCTCAAATTCAGCAGGAATAATGAATCCGCATTTAGAAATCCTGCCGGACAATAAGAGATTTAACAATAATTCGAAACCTTGTCATCGTTCGAGACCCCGGGATCGTTTGGACAACGACCTCTCCGGTAGCGACAGTGAAAAAAACTATCCTGATCTAATAGAAATGAGTACTTTGGGTCAGACGTTGGACGATTTTGATTTTAGAGCATCACAATTGGAGAAATTTTTAGAGGAGTACAGAGCTCTACGCGAACAATTATCTAGAATGAAAGAAACTCGCGAAAATTTACAAAGGACAAGGGCTGCAGAAAATGATGAATTACGGTCGATTTTAAAAGGAAAACCAAGTATAGCTGTCACTGAAACATCTTCCTCGGTCGCCTTAGCAGATGCAGCATCGCCACTCGCTCTCAGCCCCACAGAATACAAGACACAACAGCAGAGGCCGGAGTGGCTAACGACCTTACTATATCGAAACTAA

Protein

MWVLVMLALAAVATADCPRHCECKWRSGKESALCARAGLSSIPPRLDPTTQLLDLSENRLPTLRDDVFASAGLLNLQRLYLPSCSVRTIRQYAFRALVNLVELDLSRNRLDSVPSHTFDSIPELRELKLSGNPIAKILDESFTSLPHLVRLSLSSCKVAEIELRGFTGLESSLEYLELSRNKLQVLHVAVLASLRSLKGLELANNPWECTCALRPLRDWMITKNVPATVVPECALPPRLMSHSWDRLDLEDFACQPVVSAFSSNLKGVEGEQVVLVCQVKGVPAPRVRWVRAGRLLANTTSNVNSGRAFMLRSEGHTSNLTIVSADIQDAGSYTCSAENRAGKAELTLNLVIEKKLEKTAFSIFNVIVGLIGFIGLLLVILTTVMYVMGFYKKRQVDRWDQQIVTTSHRDDTYEKIEAGIKNIVEVPKILPNDNNRKRGDYRNVPSHDPEDELEGYLRGDLQEERECAISPPIEPNWRRSDFEQITRKVNVEQDLHIPQYSEYNLRCDATPESIQSSNSAGIMNPHLEILPDNKRFNNNSKPCHRSRPRDRLDNDLSGSDSEKNYPDLIEMSTLGQTLDDFDFRASQLEKFLEEYRALREQLSRMKETRENLQRTRAAENDELRSILKGKPSIAVTETSSSVALADAASPLALSPTEYKTQQQRPEWLTTLLYRN

Uniprot

H9JM42 A0A2H1W115 A0A2A4K030 A0A3S2NED2 A0A0L7L0D9 A0A194R005 + More
A0A194PHP4 A0A212EWJ5 A0A1B0CZ98 U4ULB8 A0A1A9Z8S0

Pubmed

19121390 26227816 26354079 22118469 23537049

EMBL

BABH01039923 ODYU01005686 SOQ46790.1 NWSH01000304 PCG77597.1 RSAL01000165 + More
RVE45288.1 JTDY01003957 KOB68776.1 KQ460883 KPJ11128.1 KQ459603 KPI92837.1 AGBW02011969 OWR45856.1 AJVK01002166 KB632266 ERL90966.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000037510 UP000053240 UP000053268 + More
UP000007151 UP000092462 UP000030742 UP000092445

PRIDE

H9JM42

Pfam

PF07679 I-set + More
PF13855 LRR_8

Interpro

IPR032675   LRR_dom_sf        + More
IPR013098   Ig_I-set
IPR003599   Ig_sub
IPR000483   Cys-rich_flank_reg_C
IPR007110   Ig-like_dom
IPR013783   Ig-like_fold
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp

SUPFAM

SSF48726 SSF48726

Gene 3D

2.60.40.10 3.80.10.10

ProteinModelPortal

H9JM42 A0A2H1W115 A0A2A4K030 A0A3S2NED2 A0A0L7L0D9 A0A194R005 + More
A0A194PHP4 A0A212EWJ5 A0A1B0CZ98 U4ULB8 A0A1A9Z8S0

PDB

6F2O E-value=4.52684e-25, Score=287

KEGG

101742788 K07523 netrin-G1 ligand | (RefSeq) uncharacterized LOC101742788

GO

GO:0016021 GO:0005515 GO:0016020 GO:0051056 GO:0030170 GO:0006520 GO:0006508 GO:0008237 GO:0043401 GO:0003707 GO:0051537

SignalP

Position: 1 - 15, Likelihood: 0.997371

Length:

675

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.70036

Exp number, first 60 AAs:

0.00431

Total prob of N-in:

0.11817

outside

1 - 365

TMhelix

366 - 388

inside

389 - 675

Pi

26.220701

Theta

27.055735

Tajima's D

0.244553

CLR

0.335412

CSRT

0.44202789860507

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics