SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07258
Pre Gene Modal
BGIBMGA010357
Annotation
PREDICTED:_cilia-_and_flagella-associated_protein_44-like_[Bombyx_mori]
Full name
Cilia- and flagella-associated protein 44      
Location in the cell
Nuclear   Reliability : 3.209
 

Sequence

CDS
ATGTATCAAGTCAGTCTCGAACTATTTAATGCGTTTCAGTGGCAGGAACATCTATCCCGTAAGCCCGATCCACTAGCAATGCCTCCCGGTGCCGCTGAAGCTTTAAAAGAAGCTGAAGCAACCATCGGCAATAGACTGCTCAAGACCGAACCAGACTACGTCGCTCCGCCAGGACACAATACGCAATTACGTGTCTGTCTAGCCAGGAAAGAGATCTACGATACCAAAAGAGCTTTTAACGATAAAGTACTCGAATTACGTCAGCATAAAGTGCGTCTCGTTTCTCGAATGAAAGAGATTGGTGAACGTCTACTAGAAATTAAAGCTGAAATTCCAACGAAACTCGCTAAATCACCACCCCATATACCACAAATCGACGAGGATTTGGAGTTTCCTGAAAAGAATCTTGAGATTAAACCAGAACCGGTCCAAGTCACGTCGAGAGCTACGACGGTTAAGAAAACCCAAGAACGAAGGAAATCTACACTGTTTCCACAGCCCAGGATCAGACAACCGAGAGTTGCAAGATTCATACCGATTACAGAATCCCGTCCACTTGCCGCTTCTTGGGAACTACTAAAGCCAAAGCCAGATCAAGAATCATCGGCCATCGAGATTGAAATTCGTGAACGACGTATAGCCAGACACCTTTATGAACAAGACATGCTGCTCGCCGACGCCGAAGTGGCCGTACAACAGTTCGATTCACGTTTGAGGCAACTTCAACGGGAACGTATTCGTGTACAGGAGAAAGATCAATTGTTGGAGTTACATTTGTACCAACTTCACAGAGAAATGAATGTACTTAATCGTTTTGAAGCACACGAGGACAGATTGGCTGAAAGGGTTTTCTCAAAATTAATGCAGGTACGGAGTGTCCAAGACCAAATCACTGAATGCGAACATCGGATCGAAGAACATGAAACAGAAAAAGAGAGTTTGGATTTTGCTTGTCAAGAGCTGCAGCGGCAGTTTAAAAGATTGGTCCAAGATAACAAGTTTGCTGATTTTCTGCGAAGGATTTTTAAGAAAAAATACCGTCCACCGCGTGACCGAGACGACGATGAATCATCAGAATCAGAATCTTCTTCGTCGTCAAGCGAAGAAGAAGAAGAAGAAGGTAGTATGGACAGTCGAGATATCGGACCTATTCGACTGGACCCTAACGTATGTCCCGAAGGATGCGACCAAGAAATTTACGATAAAACTTACGACTTGAGAAACACAAGACATAAACACGAACAAGAAATGATTGAACAGAGCCGTTTTGTGGAGATGCTTCGCAAGGATATCGACGCGCACAATAAAGTTAAACGCAAACTTTCTACGCAATTAGATAAAAGGAAGAATGAATTGAAAGAATTCATGTTGGAGAAACAGAGCTGCATGAACGATGTAGACCAAGTGGTGGTGCTTCGGTACGATCAGATCAGAGCTTCGGCGATACGCAACAGCGAGGGGCCGGAGGGTCTCTCTCAAACGGTTGTATTCCCTGAACAAATGCTGACAAGACTACGGAAGAGAGTTTTGGAGCTACAAGACGAGATCAAACAACAGAAGCAGCGACAGAAAATCAATCGAACCCATTTGTTCCGCATGAATATCGATCTTCGTGAAATGGAAGCTAAAGCTAAGGACTTGCGTGATAAAATGAGAGATGTTCTAACAAAGAAATTGGGGAAGCCTCGTAAAGTCGATCGTATTTTAGACGACTTGCTGAGACAGATGGCTAGGAGGCATAAGTTCTCTGCCGCTTTGGGGACAACACCACAAATGCTGGCTCAATTACGGAAGTGGAGGGTAGGTGGATAG
Protein
MYQVSLELFNAFQWQEHLSRKPDPLAMPPGAAEALKEAEATIGNRLLKTEPDYVAPPGHNTQLRVCLARKEIYDTKRAFNDKVLELRQHKVRLVSRMKEIGERLLEIKAEIPTKLAKSPPHIPQIDEDLEFPEKNLEIKPEPVQVTSRATTVKKTQERRKSTLFPQPRIRQPRVARFIPITESRPLAASWELLKPKPDQESSAIEIEIRERRIARHLYEQDMLLADAEVAVQQFDSRLRQLQRERIRVQEKDQLLELHLYQLHREMNVLNRFEAHEDRLAERVFSKLMQVRSVQDQITECEHRIEEHETEKESLDFACQELQRQFKRLVQDNKFADFLRRIFKKKYRPPRDRDDDESSESESSSSSSEEEEEEGSMDSRDIGPIRLDPNVCPEGCDQEIYDKTYDLRNTRHKHEQEMIEQSRFVEMLRKDIDAHNKVKRKLSTQLDKRKNELKEFMLEKQSCMNDVDQVVVLRYDQIRASAIRNSEGPEGLSQTVVFPEQMLTRLRKRVLELQDEIKQQKQRQKINRTHLFRMNIDLREMEAKAKDLRDKMRDVLTKKLGKPRKVDRILDDLLRQMARRHKFSAALGTTPQMLAQLRKWRVGG

Summary

Description
Flagellar protein involved in sperm flagellum axoneme organization and function.
Similarity
Belongs to the CFAP44 family.
Keywords
Cell projection   Cilium   Coiled coil   Complete proteome   Cytoplasm   Cytoskeleton   Flagellum   Phosphoprotein   Reference proteome   Repeat   WD repeat  
Feature
chain  Cilia- and flagella-associated protein 44
EMBL
KZ149959    PZC76403.1    NWSH01001728    PCG70329.1    KZ149911    PZC78125.1    + More
NWSH01002022    PCG69399.1    KQ460883    KPJ11132.1    KQ459603    KPI92832.1    DS235852    EEB18773.1    GEZM01071225    GEZM01071222    JAV65959.1    GEZM01071223    GEZM01071218    JAV65958.1    GL448037    EFN85533.1    JXUM01009519    JXUM01009520    KQ560285    KXJ83284.1    CH477327    EAT43450.1    GFDL01004335    JAV30710.1    DS231983    EDS30400.1    KQ976892    KYN07248.1    KQ981215    KYN44488.1    KQ435916    KOX68796.1    KK852637    KDR19693.1    CH902624    EDV33276.1    ADTU01002913    AXCM01001601    KZ288353    PBC27318.1    NEDP02005402    OWF41393.1    APCN01003569    GEDC01021412    JAS15886.1    KB632390    ERL94501.1    ADMH02000632    ETN65493.1    ATLV01024245    KE525350    KFB51082.1    BT021956    AAX51661.1    AAAB01008807    EAA04725.4    AE014134    BT150391    ABI31288.1    AGX15486.1    CM002910    KMY88182.1    AXCN02000581    CH954177    EDV57796.2    CH379061    EAL33000.2    CM000157    EDW88416.2    AGTO01021281    UFQS01002617    UFQT01002617    SSX14369.1    SSX33780.1    NIVC01002177    PAA60230.1    AJVK01004623    AJVK01004624    AJVK01004625    NIVC01002890    PAA54550.1    AHAT01003252    AHAT01003253    NIVC01002180    PAA60196.1    CH479189    EDW25325.1    CH916368    EDW04243.1    AC147045    MUZQ01000007    OWK63837.1    LSYS01009367    OPJ66648.1    LMAW01002502    KQK80886.1    CP012523    ALC40056.1    LSMT01000022    PFX32473.1    OUUW01000006    SPP81951.1    KN122382    KFO30756.1    QRBI01000120    RMC07720.1    GECU01006099    JAT01608.1    GAMC01014243    JAB92312.1    FN654608    CBY35271.1   
Pfam
PF00400   WD40
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR016024   ARM-type_fold       
IPR019775   WD40_repeat_CS       
IPR011041   Quinoprot_gluc/sorb_DH       
SUPFAM
SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF48371   SSF48371       
SSF50952   SSF50952       
Gene 3D

Ontologies

Topology

Subcellular location
Cell projection  
Cilium  
Flagellum  
Cytoplasm  
Cytoskeleton  
Flagellum axoneme  
Length:
603
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00035
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00023
outside
1  -  603
 
 

Population Genetic Test Statistics

Pi
14.690793
Theta
12.799458
Tajima's D
-1.218943
CLR
1.596697
CSRT
0.0985950702464877
Interpretation
Uncertain
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