SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07255
Pre Gene Modal
BGIBMGA010358
Annotation
PREDICTED:_signal-induced_proliferation-associated_1-like_protein_2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.266
 

Sequence

CDS
ATGTATGCTCCAGACCAGAGAAGAAAGGAAACGAGAGATGTTATATATCGCAGCAATTCGAGCCTTGACTTGATATACACCGAGCATTCCACCGGAAACGGCTTAAGACGTGAATATGGAAGTCACGGATCTATCGACGTGATAGGTGGAGCAAACGACAGATTTCCAGCAATGGTTCATAATTACAATGGAATATCAACGCCTGAAAAGCATCCAGGCTTAACCAAAGCGAATGAGCGCTTTACTGAAGTGAACAGCGATCATGCAGACGGACCCACGCCCCGTTCAAGTGCCAGTCCCAAAACTAGACTGAAACTAAACAAACTGTGGGGTGCAGCCTCTGGAACCCGACCACAACTCGATGAAGTATCAGTCTCAAGTGTTACAGATGTTTCTAAAAGGAAGCAATTTGCTCACTATGACTGTCAATCATTAATGACTAATTTGAATTATGCTGCTAAAGTCCGTGGTGAACTACTTAGTCGTAGACGCAACACAACTACTGGTGCATCTGCTGCATCTGCAACCAGAGGACTTCCATCAGGTGAAGATGCTTTAGGAGACACAGGGGATGGTAGATCAAATGAGCTACTTGAGAGTTGTCCGTACTTCAGGAACGAGCTAGGAGGGGAAGAAGAACGATGTGTGTCATTATGTTGGCGTACTGCACGTGGAGCTATCATAGGACAGGCGGGTGGTTGGCATCGGCCACGGACGTCGTACGGTATTTCAATGCTGGAGTTCCCACCGGGTCATTCACATTGGCGAAACGGCTGCCCTTTCGTTAGGTCAATGGCACCACTTCCAATCGAAAGTCAAGATCTAGGTGCTTTATACTATCGAAACTATTTCTACAACCAACCGCACCAGAACTGGTTCGGAATGGATGACATCCTCGGACCAGTAGCAGTTTCCATAAAGAAAGAACGTGTTGAATTACGACGTGGCAACACAGACGCATCGACGCCCCTATCCCAACTCGTATGGCAATACCGCCTACTCATACGGACTTCCGAATTGCTCACCTTACGCGGATCCATACTCGAAGATGCTTTAATAAATATTAAACAAACAAACAGCGCTTCTTATAACACAAAAGAAGTTTTGGAATATGTTGCGCCGGAGTTACAACTTAACTGCCTAAGACTGGGGATCTCAAACAGAGGTGCAGAAGAGCAACTATTACGATTAGACGAACAATGCGTAACACGACATTATAAAGTAGGAGTTATGTACTGCAAAAGTGGCCAATCAACTGAAGAAGAAATGTATAACAACCAGGAAGCTGGCCCAGCATTTGTTGAATTCCTTCAAATGTTGGGGCAAACCGTTAGATTGAAAGATTTCGACAAGTACAAGGCTGGCTTAGACAATAAAACTGATTCGACCGGGCTGTATTCTGTGTTCAGTACTTATCAAAGCTGCGACATTATGTTTCACGTGTCAACGATGCTTCCCTACACACCGAATAACAGACAGCAACTGTTAAGAAAACGACATATCGGAAACGATATCGTAACTATAGTATTTCAGGAGCCCGGCGCCGCCCCGTTCACTCCGCGCAATATTCGTTCACAGTTTCAACATGTCTTTATAGTTGTCCGAGCAATAGATCCATGTACGGACCACACTCACTACAGTATAGCTGTTAGTCGTGCTAAAGAAGTGCCTTTATTTGGCCCCCCGATAAAAGACGGTGCTGTTTATCCCAAAGGAGAAGCCTTTACCGATTTGCTTTTAAGTAAGGTAATAAATGGCGAAAATGCTGCAATACAATCACCAAAGTTTAGTACAATGGCAACACGTACTCGCCAAGAGTATCTAAAAGACCTTGCGAAGAATTACATCACAGCTACCACAGTTGAAACCGGTCAAAAGTTTTCATTATTCTCATCATTGCTAATGAAAAGTGGAAGTAATTCCGCGAACAGCACGATGGTAGCTCGCGTGGATAACTGTACTAACGACGTTCTGGTGGGCGGTGCGCTTTGCTTTCATGTTCATGTGCAAGATGAAGGTGCTGGTGGAACATTAGTAGAATGTATAATGGGAATTTCGGCTGATACTATAGTGTTTGTTGAAGATTTAAATCGACAAATTATCCTAGTTTTGCCAACTGCTTCGCTGCTTGGTTTCCATGTCCAACCAGATGGCTTAGTGACGGCAGTCGAAGGCGGAGGGTGTGCAGATAGAGCTGGCATACGTCGCGGCGCCCGGCTGCTGGAGGTGTGCCGCGCCGCTGTTGTAGCGCTCAACCATGATCAACTCGTAGATCTGCTCAAAACATCTGACCCGGTCACTGTGCGAGTAACGTTCGCGTCGGGTCTGAAGTGTCAGTGCGAGACCGGCGGCGAGGAGTGGGCGGCGCAGGCGCGGGCCGACGCGCAGCAGCCGGCGCGCGGCCGCCGGGCCTACGAGCGCGGCCACTCGCCGCCCAGATCCGACAGTTCCGGATACGGCACAGGAGGATCGGGTCGCAGCGGTCGACGGTCGCCGGACGGTGTGCGGCGCCGCTCGCATGACGACTCGTCGCCGCGCCACTCTCGGCAGAAACGCTCCTCCGCTAATACCAGCTCGCTTACGGAGGAACTGATGCGGCTGATGGACGCGGAGCTGGGGCCGGGGCGCCTGGAGAGCAGCGCGGCGCCGCTCCCGCTGCCCGACGCCACCGCGCTCGACTGGGCCGCGCTCGTGCACACCGCCACGCGCGCCATGCTGCAGATCTGCGAAGAACATCAATATCCATCAATAGATAATACTGATCCTGCTTTGGAAGCTCTCAGCACGGAACCTATAAACGATTCCTGGTCTGACGTCACACAAGTGAGTCCGCAGCCGACGGCGAGTGCGGGCGCGGGCACGCCGAGTGCGTGCGCGTGTGCGTGCGGGCTGGCGTCGCGCGTGGCGGCGCTGGAGGCGGACCACGCCGCCGCGCAACGCCACCGCCACCAGCTCGAGGACGAGGTACGTCGTCTCCGTCGGCACAACGCGAGACTGCGCGAGGAGTCTGCTCGGGCCGTGCTGCAACTGCGCCACTTCACGCAATGGTTGAAGAGGACAGTCGACAGACAATAA
Protein
MYAPDQRRKETRDVIYRSNSSLDLIYTEHSTGNGLRREYGSHGSIDVIGGANDRFPAMVHNYNGISTPEKHPGLTKANERFTEVNSDHADGPTPRSSASPKTRLKLNKLWGAASGTRPQLDEVSVSSVTDVSKRKQFAHYDCQSLMTNLNYAAKVRGELLSRRRNTTTGASAASATRGLPSGEDALGDTGDGRSNELLESCPYFRNELGGEEERCVSLCWRTARGAIIGQAGGWHRPRTSYGISMLEFPPGHSHWRNGCPFVRSMAPLPIESQDLGALYYRNYFYNQPHQNWFGMDDILGPVAVSIKKERVELRRGNTDASTPLSQLVWQYRLLIRTSELLTLRGSILEDALINIKQTNSASYNTKEVLEYVAPELQLNCLRLGISNRGAEEQLLRLDEQCVTRHYKVGVMYCKSGQSTEEEMYNNQEAGPAFVEFLQMLGQTVRLKDFDKYKAGLDNKTDSTGLYSVFSTYQSCDIMFHVSTMLPYTPNNRQQLLRKRHIGNDIVTIVFQEPGAAPFTPRNIRSQFQHVFIVVRAIDPCTDHTHYSIAVSRAKEVPLFGPPIKDGAVYPKGEAFTDLLLSKVINGENAAIQSPKFSTMATRTRQEYLKDLAKNYITATTVETGQKFSLFSSLLMKSGSNSANSTMVARVDNCTNDVLVGGALCFHVHVQDEGAGGTLVECIMGISADTIVFVEDLNRQIILVLPTASLLGFHVQPDGLVTAVEGGGCADRAGIRRGARLLEVCRAAVVALNHDQLVDLLKTSDPVTVRVTFASGLKCQCETGGEEWAAQARADAQQPARGRRAYERGHSPPRSDSSGYGTGGSGRSGRRSPDGVRRRSHDDSSPRHSRQKRSSANTSSLTEELMRLMDAELGPGRLESSAAPLPLPDATALDWAALVHTATRAMLQICEEHQYPSIDNTDPALEALSTEPINDSWSDVTQVSPQPTASAGAGTPSACACACGLASRVAALEADHAAAQRHRHQLEDEVRRLRRHNARLREESARAVLQLRHFTQWLKRTVDRQ

Summary

Pfam
PF02145   Rap_GAP        + More
PF00595   PDZ
Interpro
IPR036034   PDZ_sf        + More
IPR001478   PDZ       
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       
SUPFAM
SSF111347   SSF111347        + More
SSF50156   SSF50156       
Gene 3D
PDB
1SRQ     E-value=4.83725e-55,     Score=547

Ontologies

Topology

Length:
1024
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00815
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00009
outside
1  -  1024
 
 

Population Genetic Test Statistics

Pi
17.240531
Theta
15.708334
Tajima's D
0.323002
CLR
0.575279
CSRT
0.475776211189441
Interpretation
Uncertain
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