SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07248
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 1.295
 

Sequence

CDS
ATGGAAGGACTCGTATCGCAGAATTACGTGACCGAAGCCGAAAATGAGTACGTGATTAGAGGCAACGCAGCTATTGTTCATTGCAAGATTCCATCATTTGTCAGTGACTTCGTCTATGTAGAATCTTGGTTAATGGACGATGGTGAAATACTTACAGAAAACAATACCAAGATAGCGAAGGTGGTATCACAGCCCTTTGAAGCCGAAGCCGATAACGAATATGTAATTAGAGGGAACTCTGCTATTATGAAATGCGAAGTGCCCAGTTACGTCTCTGACTTTGTTTATGTCGAGATGTGGATGGACAGCGAGGGTGGCACTTATCAGCCCGGTGGAGATGTTGCCGTATCTCAGGCTTATACCGTAAACCTAATGGAAGAAAACGTGCTTCGCGGTAATTCGGCTGTACTAAAATGTCATATACCTAGTTTTGTCTCGGAATACGTGACTGTGACATCCTGGACTATATCGGAAAAAAACTATCCAGATATCGAGATAAGCTCGAACGGGTCGTCTAATTTAGTGGTATCGCAGTCTTATACTGTCAACCTATGGGAAGAGAATGTTTTGCGGGGAAACGCTGCTATATTGAAATGTCAAATACCAAGCTTTGCCACCGAATATGTAACGGTTACTTCTTGGATTATCTCCCAGAATGATGTTGTAGAAACTGAAATTAATATAGAGTCTGAATTCACATTAGTAATATCTCAAGAATACGACGTCAAATTTTGGGAAGAATATGTTTTGCGGGGAAATGCCGCTATCCTGAAGTGTCAAGTTCCTAGTTTTGTATCTGAATATGTCTCAGTTTCTTCTTGGATTATTTCTGAAGATCAAAAAGAGCAAGAAATAAAAATTAATGAAACTCTAAATTTAGACGGAAAATATTTGGTACTCCCATCTGGAGAGTTACACATTCGTGATGTCGGACCTGAAGACGGATATAAATCTTACCAATGTCGGACAAAGCATAGACTGACTGGAGAAACTAGATTGTCAGCTACTAAGGGGCGACTTGTCATTACTGAACCCGTTGGACGTGTTCCACCTAAATTCGCTTCAGTTGTGATGGGAACTATTATCGCAGTCAAGAAAAGCATAAGATTTGAATTGCAATGCCCAGCGCAAGCTTTCCCTATTCCAATTTTCAGGCATTCCCCGTTCCAATATTCAGAGCCTGTGGGACGTGTCCCACCGAAGTTTCCAACAATGGATAATGTTAGAGGTTTTAATGCTATGATAAAAGATAGCCTAACGCTGATATGTCCTGCTCAAGCTTTTCCTGTACCTTTATTCAGGACTTTGCTATGCTATGCCAAGCCCAAGCATTTCCTGTCCCTTTATTCAGAACCTATCACTGCGAGGGCGCCAGCCTTTCCCAATTCAGCCACGTACAATTACAATATTGAAGCTGCATCTGGTGGCTCAATGTTGTGTCAGGCCCAAGGGTACCCTGAGCCCGTATTCAGGTCATTGAGTAGAGCGTTTTGTTTCGATTTAGAACCAATAGCAAGTGCTGCTCCAAGTATTACGGCAACACCAAAAGCTACCGTTACCTACCCTCAACAAATATCTTTGGCGCTGACATGCCCTGCACAAGGATATCCTGTACCTTTATCAAGATGGTACAAATTCATTGATGGCACAACACGCAAACAACCCGTCACACTTGACGATAGAGTGAAGCAAGTATCTGGAACTCTGATTATCAAAGAGGCAAAAGTTGAAGACTCTGGCAAATACTTGTGTGTCGTCAATAATTCCGTCGGAGGCGAATCCGTTGAAACCGTTTTAACCGTCACCGCTCCATTGAAAGCAACCGTAGAGCCCGCCACTCAAACGGTAGACTTCGGGAGACCCGCTGTCTTTACTTGCAGATATGAAGGAAACCCCGTCAAAACTATTACATGGCTGAAAGACGGTAAAGATATGAAACACCATGACGCAAGCTTAAGAATTGAATCTGTGAAGAAAGAAGACAAGGGAATGTATCAGTGTTCCATTAGGAACGACCAAGAAAGCGCAAGTGCAAGTGCTGAGCTGAAACTCGGAGGACGATTTGAACCGCCTCAAATCAGGCATAGCTTTGGCGAGCAGACTTTCCGCTCCGGTCCGTCTCTTCGGCTGAAATGTGTAGCGTCCGGGAACCCGACCCCCGACATCGCCTGGCTCTTGGACGGTGAGAAGCTGTCCAGTGGCGAACGACTTCAGATCGGACAATTCGTTACGGCCGACGGCAACGTCGAGTCGCACCTCAACATTTCTTCCGTGCAGACCAACGATGGCGGCCTCTACACCTGCTTCGCTTCGAGCAAGGTCGGCAGCACATCCCATTCGGCTCGTGTCAACATCTACGGTCTACCCTTCGTTCGTCCGATGAAGAAGCGTCCCGTCGTCGCCGGAGACACTCTGATCGTGCACTGTCCAGTCGCCGGCTACCCTATCGACTCCATTGTTTGGGAACGTGATGGAAGAGTCCTCCCGATCAACCGAAAACAGAAAGTATTCCCCAACGGCACCCTTGTTATCGAGAACGTTGAGCGCATGAGCGACGAAGCCACATACACCTGCGTCGCGAAGAACTCGCAGGGATACACGGCTAGAGAAACCCTAGAACTTCAAGTCATGGTTGCACCGCAAATACTACCATTCGATTTTGGAACGGAGGCATTGAATGATCAAGAAATGGCAGTAGTGATATGCACAGTGACGAAAGGAGATTTACCTGTAGACATAAAGTGGTTTTTTAATGATGATTTCGTTAGTTCTGGAATCAATGGAATAGTATTAAATAACCATAAGAGAACAAGCCAACTGACAATAGAAACTGTTAGTCATCACAATCAAGGAAATTACACCTGTGTGGTAAAAAATGAAGCTGTCGTTCCTCATATCAAACCTTTCGAATTGGAAGAAGCAGTTTTTGCCGGAGAATCTGTACATCTCGATTGCCATGTTTCCAAAGGCGACACGCCACTTGAAATATCATGGTACTTCCAAGGAAAGCCTGTAACATACAGAATGGGCGTCAAAACAACGAAACTTAGTGAACGCGTTTCCGTGCTAGATATACAGGCGGCTTCAGATCTAAATAGTGGCAATTATACATGTACAGCTACTAATAGGGCTGGATCATCTAGCCACACCGCTCTACTCAATGTCATTGTTCCGCCGATAATAGCGCCGTTCAGCTTTGGTGAGATTCCATCAAATCCTGGTGATACAGCAGTTGTGAATTGTGTGGCTACTAAGGGTGACATGCCTCTCGACATATCGTGGACTTTCAGCAGCGAAACAATAGATTCAAGTCTCCAAAGAGACATCATGACGATGCCGCTAGGCTCCCGCGCCTCTGTCCTCACTATCAACTCTGTCAACGCAAATCACCAAGGGAACTACACGTGCATCGTAAAAATGGTACTTTCAAGGCCAAGCTTTGAAGGAGAAAGCAGGGTTCCACCACGTTGGATTCTTGAGCCAACTGATAAAGCTTTTGCCCAAGGCTCTGATGCTAAAGTTGAATGTAAAGCCGACGGCTTCCCCAAGCCTCAAGTTACTTGGAAAAGGGCTGAAGGGGATACGCCTGGCGATTACAAAGACCTTAAGCCTAACAACCCAAATGTTAAAGTTGAGGACGGCACATTGACTATTTCAAATATTCAGAAAACAAATGAGGGCTATTATCTTTGCGAAGCCGTTAACGGGATTGGATCCGGATTGTCTGCGTTGATTCTTATTAGCGTACAGGCACCACCCCAATTCGAGATTAAAATGAGGAATCAGACTGCTCGCAAAAGTGAACCTGCTGTACTTCAGTGCCAAGCTAAAGGAGAGAAGCCTATCGGAATCATCTGGAACATGAACAACAAACGTCTCGAACCCAAATCCGACCCAAGATATACCATCCGCGAAGAGATTCTCCTCGGGGGAGTTGTATCTGACCTGAGCATTAGAAGAACTGAACGATCGGACAGTGCGCTGTTTACTTGCGTGGCAACTAACGCTTTCGGTTCGGACGATACCAGCATCAACATGATCATCCAGGAGGTTCCCGAAGCTCCATATGGTCTAAAAGTCTTGGACAAATCTGGTAGAACAGTACAACTGTCTTGGGCAGCTCCTTATGACGGCAACTCGCCCATAAAGAAGTTCCTTATTGAATACAAACGCGCTAAGGGTAACTGGGAAAAGGATATTGACAGAGTTCTTGTACCAGGGGACGCTACTGAAGCCGGCGTATTTAGTTTGAGACCCGCCACCGCCTACCACATTAGGATCGTCGCCGAAAACGAACTCGGAACTTCAGAGCCTTCAGAAACTGTTACAATCATCACGGCCGAGGAGGCACCCACCGGGCCCCCACAAGACGTTAAGGTTGACGCGGCGGACAAGCACACACTTCGCGTTACCTGGAAACCTCCCGCGCCCCAAGACTGGAATGGTGAACTGCAGGGGTACTACGTTGGATACAAATTGGCTTCCAGCAACAAATCGTTCGTTTTCGAAACCGTCGACATTTCCAAAGAATCTGGCAAGGAACACCATTTGGACATTCAAAATCTGAAGACCTACACCCAGTACACTGTCGTAGTCCAAGCCTTCAATAAGATGGGATCGGGCCCGGTGTCCGCTGAAGTTCGCGCCTATACCGCCGAAGGTGCCCCGTCTGCTCCCCCTCAAGACGTTTTATGCACCACCCTCACGGCACAAACCATCCGCGTCTCCTGGGTGTCGCCCCCACTGGCTGCTGCCAATGGTCTGATCAAGGCGTACAAAGTGATTTACGGACCCAGCGAAACTTGGTACGATGAAAAAACTAAAGACACCAAAAACACGGCCAGTAGCGAAACTATTCTCCACGGACTCAAGAAATTCACTAACTACTCTATGGAAGTGCTTGCGACCACTAACGGCGGAGACGGAGTGCGATCTGTACCCATCCACTGTCAGACTGAACAAGACGTACCCGAGGCCCCGCGTGCCGTCAAAGCTCTTGTAATGGGACAGGATTCTATCCTTGTTTCTTGGAGAGCCCCCGCGCAACCTAACGGAGTTGTCACCCACTACAACGTGTACACGCAAGCACAGAACGCAGAACCTCATCCTAATAAGGTACCAGCCAGTCAAACTAGTTACTCCGCAACTGAACTGAAGCCCGGCCGATACGACTTCTGGGTAACCGCTTCAACTATCATCGGCGAAGGACAACCCTCAGCAACCGCCTCTTGCAGCCCCAGCGACAAAGTACCCGCTAAGATCGCTTCGTTTGACGAATCATTCACCGCGACCTACAAAGAGGATGTGAAGTTGCCTTGTCTTGCTGTCGGTGTGCCGTCCCCTAATATTATCTGGAAGGTCAAAGGTCAACTCTTGGACGCGTCGGAGCGTGTCCGCCAGCTGCCGGAAGGTTCGCTTCAGATCGCCGGGGTGGCTCGCGAGGACGCCGGGGAGTATTCCTGCCACGTCGACAACCAGTTCGGCACCGATACCGTCACCCACACTCTGTCTGTACTCGCTCCCCCGTTCCCGCCGCAGCTGAGCATCGCGTCGTCGTCCGTGTCGTCCCTGACGCTGCGCCTGAAGCCGTCCGCCGACGTGGACCAGTCCCCCGCCGCCGGCTACACTATCCACTACAAACAGGAGTTCGGAGACTGGGAAACTGTTCAGATCCCGAGCAGCACCGATACGTACACTCTTGAGAATTTATTCTGCGGATCACGATATCAGCTTTACGTCACAGCTTACAATGGTATCGGAACTGGCGAGGCTTCGGACGTGGTGATCGCCCGCACGCGCGGCTCCAAGCCCCCCGTGCCCCGCGCCGCCGACTTCATCGAGGTGGCCTCCTCCTCCGTCACCCTGCACCTCAAGCAGTGGCTCGACGGCGGCTGCCCCATGAGCCACTTCGTCGTCGAGAACAAGAAGAAAGGCGCCGCCGAATGGAACCAGATTTCGAACGCCGTGAAGCCAGGAGGAAACTTTGTCGTACTCGACCTGGAACCGGCCACTTGGTACGTGCTTAGGATCACGGCTCACAACAACGCTGGCTTCAATGTGGCTGAATACGAATTCGCGACTCTAACGATGACTGGCGGTACGATCGCGCCCGCACGCGACGCGGGGGGCAACGACCTCAGCGCCGAACAGACCCTCAAGATAATACTCTCGCACCTGAACCTTATCGTGCCCGTCGTCGCTGCCATTCTGGTCATCATCATCGCCATCGTAGTGGTGTGCGTCGTCCGGGGCGCCCGGGACCAACATAAAGATGACGCGGTGTACAACGCGTCGCAGGCGGCGCTGGGCGGCGGCGCGGGCGGCACGCTGGACAAGCGCGGCGGGCTGCGCGACGAGCTGGGCTACATCGCGCCCCCCAACCGCAAGCTGCCCCCCGTGCCCGGCTCCAACTACAACACGTGCGACCGCGTCAAGCGACAGGCCGTCATCAGCATGGAAGATGAAATCTGCCCATACGCCACGTTCCACCTGCTAGGTTTCCGCGAGGAAATGGACCCGAGCAAGGCATTGGCGTTCCCCCATCACCACCCCGCTCACGCCGGCACTCTCGCTCACCCTCACCCTCACCATCCCGCGCACTCACGAGCTGGATCCCAGAGCATGCCACGCGCCAACAGCCGTTACGCCCGCAAGAACTCGCAAGGGGGACAGAGCGCCATCTACTCCACCGCTCCCGAATATGACGACCCGGCCACCTGCGCTGAAGAGGACCAATACCGAGCCCGCTACTCGCGTCCGATGTACGCGTGCGGCCCGGAATACGACGAGCCCGCCTGTTGCGCCCCCGAGGATGAGCAGTACACCGGCGCATACGGCACGCCCTACTCTGACCACTACGGCTCCCGTCCCAGCATTGTGAACCCCGCAGGCACCCGCAAGTGTGGCTCCCCCGAGCCCCCGCCGCCGCCGCCCCGCAACACCAACAACGACAACAACTGCTCCTCCTCCTTCAACGAGAGCAAGGACTCCAACGAGATCTCCGAAGCAGAGTGCGACCAGCCACGAAACTATCCGGTCAGGGCCCACACTGCCAAGGACGGTTTGCACAGCGAGGAAATGAGGAAACTCATTGACAGACCAGAAGCAGCCACCCCAATCCCCCAGCAAGCAGTCCACGGGCGGGGGGGACTCACAGCCTACGATACTGTGGCAGTGTAA
Protein
MEGLVSQNYVTEAENEYVIRGNAAIVHCKIPSFVSDFVYVESWLMDDGEILTENNTKIAKVVSQPFEAEADNEYVIRGNSAIMKCEVPSYVSDFVYVEMWMDSEGGTYQPGGDVAVSQAYTVNLMEENVLRGNSAVLKCHIPSFVSEYVTVTSWTISEKNYPDIEISSNGSSNLVVSQSYTVNLWEENVLRGNAAILKCQIPSFATEYVTVTSWIISQNDVVETEINIESEFTLVISQEYDVKFWEEYVLRGNAAILKCQVPSFVSEYVSVSSWIISEDQKEQEIKINETLNLDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGRVPPKFASVVMGTIIAVKKSIRFELQCPAQAFPIPIFRHSPFQYSEPVGRVPPKFPTMDNVRGFNAMIKDSLTLICPAQAFPVPLFRTLLCYAKPKHFLSLYSEPITARAPAFPNSATYNYNIEAASGGSMLCQAQGYPEPVFRSLSRAFCFDLEPIASAAPSITATPKATVTYPQQISLALTCPAQGYPVPLSRWYKFIDGTTRKQPVTLDDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLKATVEPATQTVDFGRPAVFTCRYEGNPVKTITWLKDGKDMKHHDASLRIESVKKEDKGMYQCSIRNDQESASASAELKLGGRFEPPQIRHSFGEQTFRSGPSLRLKCVASGNPTPDIAWLLDGEKLSSGERLQIGQFVTADGNVESHLNISSVQTNDGGLYTCFASSKVGSTSHSARVNIYGLPFVRPMKKRPVVAGDTLIVHCPVAGYPIDSIVWERDGRVLPINRKQKVFPNGTLVIENVERMSDEATYTCVAKNSQGYTARETLELQVMVAPQILPFDFGTEALNDQEMAVVICTVTKGDLPVDIKWFFNDDFVSSGINGIVLNNHKRTSQLTIETVSHHNQGNYTCVVKNEAVVPHIKPFELEEAVFAGESVHLDCHVSKGDTPLEISWYFQGKPVTYRMGVKTTKLSERVSVLDIQAASDLNSGNYTCTATNRAGSSSHTALLNVIVPPIIAPFSFGEIPSNPGDTAVVNCVATKGDMPLDISWTFSSETIDSSLQRDIMTMPLGSRASVLTINSVNANHQGNYTCIVKMVLSRPSFEGESRVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKRAEGDTPGDYKDLKPNNPNVKVEDGTLTISNIQKTNEGYYLCEAVNGIGSGLSALILISVQAPPQFEIKMRNQTARKSEPAVLQCQAKGEKPIGIIWNMNNKRLEPKSDPRYTIREEILLGGVVSDLSIRRTERSDSALFTCVATNAFGSDDTSINMIIQEVPEAPYGLKVLDKSGRTVQLSWAAPYDGNSPIKKFLIEYKRAKGNWEKDIDRVLVPGDATEAGVFSLRPATAYHIRIVAENELGTSEPSETVTIITAEEAPTGPPQDVKVDAADKHTLRVTWKPPAPQDWNGELQGYYVGYKLASSNKSFVFETVDISKESGKEHHLDIQNLKTYTQYTVVVQAFNKMGSGPVSAEVRAYTAEGAPSAPPQDVLCTTLTAQTIRVSWVSPPLAAANGLIKAYKVIYGPSETWYDEKTKDTKNTASSETILHGLKKFTNYSMEVLATTNGGDGVRSVPIHCQTEQDVPEAPRAVKALVMGQDSILVSWRAPAQPNGVVTHYNVYTQAQNAEPHPNKVPASQTSYSATELKPGRYDFWVTASTIIGEGQPSATASCSPSDKVPAKIASFDESFTATYKEDVKLPCLAVGVPSPNIIWKVKGQLLDASERVRQLPEGSLQIAGVAREDAGEYSCHVDNQFGTDTVTHTLSVLAPPFPPQLSIASSSVSSLTLRLKPSADVDQSPAAGYTIHYKQEFGDWETVQIPSSTDTYTLENLFCGSRYQLYVTAYNGIGTGEASDVVIARTRGSKPPVPRAADFIEVASSSVTLHLKQWLDGGCPMSHFVVENKKKGAAEWNQISNAVKPGGNFVVLDLEPATWYVLRITAHNNAGFNVAEYEFATLTMTGGTIAPARDAGGNDLSAEQTLKIILSHLNLIVPVVAAILVIIIAIVVVCVVRGARDQHKDDAVYNASQAALGGGAGGTLDKRGGLRDELGYIAPPNRKLPPVPGSNYNTCDRVKRQAVISMEDEICPYATFHLLGFREEMDPSKALAFPHHHPAHAGTLAHPHPHHPAHSRAGSQSMPRANSRYARKNSQGGQSAIYSTAPEYDDPATCAEEDQYRARYSRPMYACGPEYDEPACCAPEDEQYTGAYGTPYSDHYGSRPSIVNPAGTRKCGSPEPPPPPPRNTNNDNNCSSSFNESKDSNEISEAECDQPRNYPVRAHTAKDGLHSEEMRKLIDRPEAATPIPQQAVHGRGGLTAYDTVAV

Summary

EMBL
BABH01005835    BABH01005836    BABH01005837    NWSH01001519    PCG70993.1    PCG70976.1    + More
PCG70989.1    PCG70984.1    PCG70992.1    PCG70981.1    PCG70990.1    PCG70973.1    PCG70978.1    PCG70986.1    PCG70982.1    PCG70988.1    PCG70985.1    PCG70980.1    PCG70971.1    PCG70975.1    KZ149911    PZC78120.1    KQ759820    OAD62724.1    KZ288269    PBC29920.1    UFQS01000847    UFQT01000847    SSX07271.1    SSX27614.1    CH480816    EDW46740.1    SSX07272.1    SSX27615.1    CH916367    EDW00932.1    GL888404    EGI61628.1    GDUN01000084    JAN95835.1    ATLV01009633    ATLV01009634    KE524540    KFB35461.1    CH477675    EAT37388.1    KQ971372    EFA10759.1    KQ977349    KYN03354.1    ACPB03004816    ACPB03004817    ACPB03004818    ACPB03004819    ACPB03004820    ACPB03004821    DS235882    EEB20100.1    AE013599    ABI31073.1    ADTU01019553    ADTU01019554    ADTU01019555    ADTU01019556    CM000157    KRJ98240.1    KRJ98241.1    ABI31063.1    EDW89165.2    CH902619    KPU75871.1    CM000071    KRT01547.1    ABI31030.1    KYB25260.1    AAM68883.1    ABI31039.1    AY686596    AAT96374.1    CM002911    KMY91943.1    ABI31079.1    AAF59271.2    KPU75878.1    KMY91947.1    ABI31037.1    ABI31077.1    AFH07926.1    AAM68884.1    AF260530    AAF71926.1    ABI31080.1    CH933808    EDW09998.2    KMY91944.1    ABI31038.1    EDV35911.2    AFH07929.1    AFH07930.1    KRJ98247.1    ABI31036.1    KRT01545.1    KRT01554.1    ABI31074.1    ABI31034.1    AFH07933.1    KQ981914    KYN33110.1    ABI31031.1    AAAB01008823    EAA05472.4    ABI31048.1    ABI31067.1    KPU75880.1    AGB93297.1    CH940648    KRF79712.1    EDW60974.2    ABI31064.1    AFH07936.1    ABI31052.1    KRT01544.1    ABI31072.1    KRJ98245.1    KRT01552.1    AAM68885.2    ABI31068.1    KRF79707.1    ABI31060.1   
Pfam
PF00047   ig        + More
PF12355   Dscam_C
PF07679   I-set
PF00041   fn3
PF05186   Dpy-30
Interpro
IPR021012   Dscam_C        + More
IPR013098   Ig_I-set       
IPR036116   FN3_sf       
IPR013151   Immunoglobulin       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR007858   Dpy-30_motif       
SUPFAM
SSF48726   SSF48726        + More
SSF49265   SSF49265       
Gene 3D
PDB
3DMK     E-value=3.08813e-177,     Score=1604

Ontologies

Topology

Length:
2392
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.0148
Exp number, first 60 AAs:
0.00718
Total prob of N-in:
0.00042
outside
1  -  2059
TMhelix
2060  -  2082
inside
2083  -  2392
 
 

Population Genetic Test Statistics

Pi
0.152083
Theta
1.719157
Tajima's D
-2.005833
CLR
263.649874
CSRT
0.00694965251737413
Interpretation
Possibly Positive selection
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号