SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07231
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.091 Peroxisomal   Reliability : 1.295 PlasmaMembrane   Reliability : 1.103
 

Sequence

CDS
ATGGAGAGTCTCCTGGAGACGCTGGATGAGGATCCGTGGGGGCGACCCTATCACATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCAATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCACTGTTCCCGCAGGAGCAGGGGGGATTTGTCGCTCCCGCTATGGGCGCGCCGCCGGAGTACGACGGCGACGCCCCTGCTGAGGTGCCCCATATAACAGGGGCGGAGCTCCGTGTGGCAGTACGCAAAATGTGCGCAAAGGACACTGCACCTGGCCCGGACGGCATCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGGCTTTATAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGGTCGTACATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCACTCTGGACAGTCGTTGGGCCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTTCCCAACATCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGGTCAATGGCCTTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACCCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCACCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGTTACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTTGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCAGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCTTAGCCCTGGCCCTCTAA
Protein
MESLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEQGGFVAPAMGAPPEYDGDAPAEVPHITGAELRVAVRKMCAKDTAPGPDGIHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHGGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLTLDSRWAFRAHFQHLVPRLLGVAGALSRLLPNIGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQPTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGNDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Summary

Similarity
Belongs to the AB hydrolase superfamily. Lipase family.
EMBL
AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078929    BAC06452.1    AB078930    BAC06454.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    LBMM01006954    KMQ90166.1    LBMM01006671    KMQ90407.1    RSAL01000481    RVE41577.1    LBMM01005948    KMQ91066.1    LBMM01002052    KMQ95336.1    LBMM01006657    KMQ90417.1    LBMM01004272    KMQ92618.1    LBMM01007036    KMQ90099.1    LBMM01005733    KMQ91252.1    LBMM01008448    KMQ88867.1    LBMM01015018    KMQ84954.1    LBMM01002480    KMQ94776.1    LBMM01006063    KMQ90967.1    LBMM01007425    KMQ89740.1    LBMM01004634    KMQ92224.1    LBMM01015025    KMQ84953.1    LBMM01003988    KMQ92922.1    LBMM01008422    KMQ88894.1    LBMM01004505    KMQ92346.1    LBMM01012412    KMQ86235.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    RSAL01003504    RVE40273.1    GGMR01000779    MBY13398.1    LBMM01014122    KMQ85315.1    LBMM01008278    KMQ89009.1    ABLF02011238    LBMM01008682    KMQ88705.1    GGMR01014195    MBY26814.1    LBMM01005474    KMQ91485.1    GGMR01015159    MBY27778.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01003245    KMQ93755.1    GFXV01002090    MBW13895.1    LBMM01005465    KMQ91492.1    KMQ94772.1    LBMM01005216    KMQ91703.1    ABLF02034925    LBMM01003575    KMQ93366.1    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01004262    KMQ92649.1    ABLF02041886    LBMM01006725    KMQ90373.1    GGMR01004600    MBY17219.1    LBMM01004261    KMQ92650.1    GGMR01011682    MBY24301.1    GGMR01006838    MBY19457.1    LBMM01015285    KMQ84870.1    GFXV01003903    MBW15708.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    ABLF02011183    ABLF02041884    ABLF02010223    GGMR01015354    MBY27973.1    ABLF02018942    ABLF02041885    KU543683    AMS38371.1    ABLF02041557    KQ971309    EEZ99146.1    GGFJ01001439    MBW50580.1    ABLF02018808    GGFJ01001727    MBW50868.1    ABLF02023257    LBMM01008445    KMQ88871.1    GGFJ01001369    MBW50510.1    GGFJ01001370    MBW50511.1    GAPW01000192    JAC13406.1    LBMM01013668    KMQ85535.1    ABLF02005203    ABLF02041316    GAKP01002292    JAC56660.1    GEHC01000915    JAV46730.1    QOIP01000014    RLU15074.1    GALA01001777    JAA93075.1    GGFL01001583    MBW65761.1    ABLF02004854    ABLF02041317    GEHC01000964    JAV46681.1    LBMM01014956    KMQ84982.1    KQ972226    KYB24577.1    GAMC01020519    GAMC01020515    JAB86040.1    GGFL01004044    MBW68222.1    GGFK01005660    MBW38981.1    GAMC01020517    JAB86038.1    AB593321    BAK38639.1    ABLF02007989   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF01421   Reprolysin
PF00098   zf-CCHC
PF00151   Lipase
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR029058   AB_hydrolase       
IPR013818   Lipase/vitellogenin       
IPR000734   TAG_lipase       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF53474   SSF53474       
Gene 3D
PDB
6AR3     E-value=3.56936e-05,     Score=115

Ontologies

Topology

Subcellular location
Secreted  
Length:
698
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0482800000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00025
outside
1  -  698
 
 

Population Genetic Test Statistics

Pi
19.556242
Theta
2.938906
Tajima's D
0.643524
CLR
2.516156
CSRT
0.59942002899855
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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