Gene

KWMTBOMO07226  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010578

Annotation

PREDICTED:_L-2-hydroxyglutarate_dehydrogenase?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr12(+):8607286-8615203      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.946 Mitochondrial   Reliability : 2.103

CDS

ATGGCAATAGCGAAAAAATGCGTGCGATTTTTGCTAAATTTTAATTATCGTCATCCTGTTACCACTGGCACATTACGAAGATACAGTGCAGGTGCAGGTGATACTTCACAATTTGATGTAGCAGTGATTGGAGGAGGCATAGTAGGCTCTGCTTCAGCCAGGGAGTTAATATTAAAACACCCACATTTAAAGGTTGCTTTAGTTGAAAAAGAAAACCGATTTGCCTTCCACCAAAGTGGAAATAACAGTGGCGTGATTCATGCAGGTATTTATTATAAACCTGGTTCCCTTAAAGCAAAATTGTGTGTCAAAGGTCTGAACTTATCATATAAATATTTTGATCAGAAAGGAATCAAGTATTCCAAATGTGGTAAACTTATTGTGGCAACAGAGAGATCAGAAGTTCCTAGACTTTTTGATTTATATGAAAGGGGACTTAAGAATGGTGTTAAAGATATACAGCTCATGGATAGTAAAGAGATGAAAGAAATTGAACCACATTGCAAAGGATTACAGGCATTATGGTCTCCTCATACGGGTATTGTTAGTTGGGCTCAGGTTACAGACTCCTATGTTAAAGATTTTATTGAATGTGGTGGCAAAACCTATCTAAATTTTGAAGTAAAGAAATTTATAGAAGCTGAGTCTGCTGAGTATCCTGTAAAAATAATTGATACAGAAAATAATGTTATTAATGCAAAATATGTCCTCACATGCTGTGGACTGCACTCCGATAAAGTGGCAGTTTTAACAGGGTGTCCAGAAGAACCCAAAATAATACCATTTAGAGGTGAATACCTTTATTTGGTTCCAAACAAAAGTAAATTGACCAAAACCAATATATACCCTGTGCCTGACCCTAGGTTCCCATTTCTGGGTGTTCATTTAACACCAAGAATAGATGGCCGAGTTATTGTAGGACCAAATGCGATTTTAGCATTTTGCAAAGAAGGATATAGGTGGGGCGATTATAATATGCAGGAACTTAAAGAAATTATTGGTTTTTCCGGATTCCGCAAAATGGCTATGAAATATGCTAGTTTTGGTATCAAGGAAATGATAAGATCGGCTATAACACCTCTACAAGTTATGCAAGTTCGGAAGTATATACAGGAAATAACGTCAGCAGATGTTGAAAGGGGTCCAGCTGGTGTTAGGGCGCAAGCAATGGCTAAGGATGGTACATTAATAGAAGACTTTGTTTTTGATTCGAAACCTGGACATGGAGCAATAGGAAGTAGAGTACTCCATTGCCGAAATGCTCCATCCCCAGGAGCTACGTCATCACTTGCGATTGCTGAAATGGTTGTAGAGAAAATTGAAAAAGAATTTAAAATATGA

Protein

MAIAKKCVRFLLNFNYRHPVTTGTLRRYSAGAGDTSQFDVAVIGGGIVGSASARELILKHPHLKVALVEKENRFAFHQSGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKGIKYSKCGKLIVATERSEVPRLFDLYERGLKNGVKDIQLMDSKEMKEIEPHCKGLQALWSPHTGIVSWAQVTDSYVKDFIECGGKTYLNFEVKKFIEAESAEYPVKIIDTENNVINAKYVLTCCGLHSDKVAVLTGCPEEPKIIPFRGEYLYLVPNKSKLTKTNIYPVPDPRFPFLGVHLTPRIDGRVIVGPNAILAFCKEGYRWGDYNMQELKEIIGFSGFRKMAMKYASFGIKEMIRSAITPLQVMQVRKYIQEITSADVERGPAGVRAQAMAKDGTLIEDFVFDSKPGHGAIGSRVLHCRNAPSPGATSSLAIAEMVVEKIEKEFKI

Uniprot

H9JM26   A0A194R5M1   A0A194PJA1   A0A2A4K8K2   A0A212EHW3   A0A2H1VZC4   + More
A0A1Q3G2J1   A0A0P6IW68   A0A182GIB6   A0A0P5XVS6   E9GS31   A0A0L0BRY1   A0A1I8N3Q7   A0A0N8BLN5   A0A0K8TMQ6   A0A0P5FZA2   A0A0P6GTV3   A0A0P6B2D8   A0A182YGZ7   T1PAR0   A0A182RBS9   A0A182JF95   A0A182WTE6   B4KJP5   A0A182V9J0   A0A084VP77   A0A182PMA7   A0A0P5YKP2   Q7Q3G9   A0A182HVE0   A0A182W9V8   A0A182TE56   A0A182M6X3   A0A182KG75   A0A1I8PXR2   A0A2M4BN32   A0A182Q1P6   A0A182NE98   A0A2M3Z9C7   A0A0P5Z792   A0A1I8PXN9   W5J6R2   A0A2M4BPD2   A0A2M3Z9G3   A0A2M3Z9E6   A0A182F4G6   A0A2J7RCV9   A0A0N8B994   A0A2M4AHR2   A0A2J7RCX2   A0A2J7RCW2   A0A0P4WQD0   A0A0M4E415   A0A0T6B500   A0A336LS65   A0A3B0K332   A0A1Y1LHF2   B4MZQ5   Q9VJ28   B4JBX8   A0A3B0JGN5   A0A0K8RJZ2   A0A0P5KJK5   B4I5N1   B4Q907   B3MPE7   B4LSJ3   A0A131YX23   A0A131Y0L2   B4PAD8   A0A1W4VXW0   A0A131Y1R4   A0A1B0C888   B4G7F2   A0A1A9Z0Q4   D3TP33   A0A1A9VXR6   A0A1B0G3T8   A0A1A9WK62   A0A034VDX0   A0A0K8UFZ2   E0VP15   Q29LU0   W8BE04   B3NL74   D2A384   A0A1Y1LMR5   A0A0P6GG25   A0A1W4WTY9   A0A1A9XTS0   A0A0P5C2H1   A0A1B0C0G8   A0A1D2N4I7   A0A1B6C7V0   A0A1E1XH88   A0A2B4RKF1   A0A1L8E053   A0A1B6MRH2   A0A1B6HDJ9   U4USS4  

Pubmed

19121390    26354079    22118469    26999592    26483478    21292972    + More
26108605    25315136    26369729    25244985    17994087    24438588    12364791    14747013    17210077    20920257    23761445    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    26830274    17550304    20353571    25348373    20566863    15632085    24495485    18362917    19820115    27289101    28503490    23537049   

EMBL

BABH01005795    KQ460883    KPJ11161.1    KQ459603    KPI92799.1    NWSH01000030    + More
PCG80541.1    AGBW02014789    OWR41072.1    ODYU01005376    SOQ46153.1    GFDL01001008    JAV34037.1    GDUN01000716    JAN95203.1    JXUM01012104    JXUM01012105    JXUM01012106    KQ560345    KXJ82937.1    GDIQ01236133    GDIQ01167212    GDIP01066609    JAK15592.1    JAM37106.1    GL732561    EFX77633.1    JRES01001454    KNC22830.1    GDIQ01165579    JAK86146.1    GDAI01002398    JAI15205.1    GDIQ01253601    JAJ98123.1    GDIQ01028414    JAN66323.1    GDIP01020984    JAM82731.1    KA645240    AFP59869.1    CH933807    EDW11490.2    ATLV01014984    KE524999    KFB39771.1    GDIP01056453    JAM47262.1    AAAB01008964    EAA12921.2    APCN01002506    AXCM01000972    GGFJ01005349    MBW54490.1    AXCN02000864    GGFM01004372    MBW25123.1    GDIP01049390    JAM54325.1    ADMH02002133    ETN58459.1    GGFJ01005805    MBW54946.1    GGFM01004425    MBW25176.1    GGFM01004406    MBW25157.1    NEVH01005883    PNF38667.1    GDIQ01200307    JAK51418.1    GGFK01006966    MBW40287.1    PNF38668.1    PNF38665.1    GDRN01071243    JAI63730.1    CP012523    ALC38484.1    LJIG01009839    KRT82277.1    UFQT01000144    SSX20824.1    OUUW01000004    SPP79421.1    GEZM01057502    JAV72298.1    CH963920    EDW77840.1    AE014134    BT044190    AAF53729.1    ACH92255.1    AHN54590.1    AHN54591.1    CH916368    EDW04081.1    SPP79422.1    GADI01002949    JAA70859.1    GDIP01177098    GDIQ01184367    JAJ46304.1    JAK67358.1    CH480822    EDW55687.1    CM000361    CM002910    EDX05439.1    KMY90906.1    CH902620    EDV31243.1    CH940649    EDW64815.1    GEDV01005497    JAP83060.1    GEFM01002773    JAP73023.1    CM000158    EDW90346.1    GEFM01003358    JAP72438.1    AJWK01000274    CH479180    EDW29285.1    EZ423185    ADD19461.1    CCAG010005272    GAKP01018966    GAKP01018964    GAKP01018962    GAKP01018959    GAKP01018957    JAC39990.1    GDHF01026730    JAI25584.1    DS235354    EEB15121.1    CH379060    EAL33955.1    GAMC01011332    JAB95223.1    CH954179    EDV54724.1    KQ971338    EFA02276.1    GEZM01057503    JAV72297.1    GDIQ01035475    JAN59262.1    GDIP01177099    JAJ46303.1    JXJN01023591    LJIJ01000226    ODN00187.1    GEDC01027909    JAS09389.1    GFAC01000511    JAT98677.1    LSMT01000506    PFX16970.1    GFDF01002020    JAV12064.1    GEBQ01001437    JAT38540.1    GECU01034882    JAS72824.1    KB632433    ERL95573.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000007151    UP000069940    + More
UP000249989    UP000000305    UP000037069    UP000095301    UP000076408    UP000075900    UP000075880    UP000076407    UP000009192    UP000075903    UP000030765    UP000075885    UP000007062    UP000075840    UP000075920    UP000075902    UP000075883    UP000075881    UP000095300    UP000075886    UP000075884    UP000000673    UP000069272    UP000235965    UP000092553    UP000268350    UP000007798    UP000000803    UP000001070    UP000001292    UP000000304    UP000007801    UP000008792    UP000002282    UP000192221    UP000092461    UP000008744    UP000092445    UP000078200    UP000092444    UP000091820    UP000009046    UP000001819    UP000008711    UP000007266    UP000192223    UP000092443    UP000092460    UP000094527    UP000225706    UP000030742   

PRIDE

H9JM26    Q9VJ28   

Pfam

PF01266   DAO        + More
PF07096   DUF1358

Interpro

IPR036188   FAD/NAD-bd_sf        + More
IPR006076   FAD-dep_OxRdtase       
IPR009792   TMEM242       

SUPFAM

SSF51905   SSF51905       

Gene 3D

3.50.50.60    

ProteinModelPortal

H9JM26   A0A194R5M1   A0A194PJA1   A0A2A4K8K2   A0A212EHW3   A0A2H1VZC4   + More
A0A1Q3G2J1   A0A0P6IW68   A0A182GIB6   A0A0P5XVS6   E9GS31   A0A0L0BRY1   A0A1I8N3Q7   A0A0N8BLN5   A0A0K8TMQ6   A0A0P5FZA2   A0A0P6GTV3   A0A0P6B2D8   A0A182YGZ7   T1PAR0   A0A182RBS9   A0A182JF95   A0A182WTE6   B4KJP5   A0A182V9J0   A0A084VP77   A0A182PMA7   A0A0P5YKP2   Q7Q3G9   A0A182HVE0   A0A182W9V8   A0A182TE56   A0A182M6X3   A0A182KG75   A0A1I8PXR2   A0A2M4BN32   A0A182Q1P6   A0A182NE98   A0A2M3Z9C7   A0A0P5Z792   A0A1I8PXN9   W5J6R2   A0A2M4BPD2   A0A2M3Z9G3   A0A2M3Z9E6   A0A182F4G6   A0A2J7RCV9   A0A0N8B994   A0A2M4AHR2   A0A2J7RCX2   A0A2J7RCW2   A0A0P4WQD0   A0A0M4E415   A0A0T6B500   A0A336LS65   A0A3B0K332   A0A1Y1LHF2   B4MZQ5   Q9VJ28   B4JBX8   A0A3B0JGN5   A0A0K8RJZ2   A0A0P5KJK5   B4I5N1   B4Q907   B3MPE7   B4LSJ3   A0A131YX23   A0A131Y0L2   B4PAD8   A0A1W4VXW0   A0A131Y1R4   A0A1B0C888   B4G7F2   A0A1A9Z0Q4   D3TP33   A0A1A9VXR6   A0A1B0G3T8   A0A1A9WK62   A0A034VDX0   A0A0K8UFZ2   E0VP15   Q29LU0   W8BE04   B3NL74   D2A384   A0A1Y1LMR5   A0A0P6GG25   A0A1W4WTY9   A0A1A9XTS0   A0A0P5C2H1   A0A1B0C0G8   A0A1D2N4I7   A0A1B6C7V0   A0A1E1XH88   A0A2B4RKF1   A0A1L8E053   A0A1B6MRH2   A0A1B6HDJ9   U4USS4  

PDB

3DME     E-value=1.59335e-26,     Score=297

KEGG

101745774    K00109 2-hydroxyglutarate dehydrogenase [EC:1.1.99.2] | (RefSeq) L-2-hydroxyglutarate dehydrogenase,

PATHWAY

00650    Butanoate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016491   GO:0047545   GO:0005739   GO:0003973   GO:0016021   GO:0016787   GO:0004046   GO:0005737   GO:0006520   GO:0006508   GO:0008237   GO:0043401   GO:0003707   GO:0051537   GO:0055114  

Length:

446

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0902099999999999

Exp number, first 60 AAs:

0.08555

Total prob of N-in:

0.01994

outside

1  -  446

 

 

Pi

27.520501

Theta

32.210653

Tajima's D

0.063588

CLR

1.42409

CSRT

0.385330733463327

Interpretation

Uncertain